NO05G04900, NO05G04900 (gene) Nannochloropsis oceanica

Overview
NameNO05G04900
Unique NameNO05G04900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2031
Alignment locationchr5:1266165..1268195 -

Link to JBrowse

Properties
Property NameValue
DescriptionBasal body protein [OFD1], oral-facial-digital syndrome 1 protein-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1266165..1268195 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR006594LisH
Homology
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BLAST of NO05G04900 vs. NCBI_GenBank
Match: XP_003061165.1 (basal body protein [Micromonas pusilla CCMP1545] >EEH54815.1 basal body protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 79.0 bits (193), Expect = 6.500e-11
Identity = 74/281 (26.33%), Postives = 116/281 (41.28%), Query Frame = 0 
Query:   41 ELKMLVRKKLRESGAIDDILGQLRGHLLRPLARANIHEDQKVHPCPG-MSLENMVLNSLVVDFLRHQKFRQTLAVFLPESHMLVQQHLLSRHDLAETLMLAQSKGESEH----------------------KSLLHAL----VLPFQRAEPAVVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRFQQECEARAQKEIAAEISHFRETELTHLRLEEAAKHRRELLIVREEMQATQDRKVEQAWAQAKEEERRVRVRLQAAEAAQFEARQ 295
            + K  V  +L+ +G ID I G LR  L+  L R +        P PG  +L     NSL V++L HQ +   L+VF PE   L  Q ++SR +++  L L +    S+H                       ++L A+        +R  P                                          ++ FQ+ECE+R + E+   +   RE E+T  RLEEA+KHRR L   RE+++     ++++  A+ + +  RVR    A E A +E RQ
Sbjct:    7 QFKRKVFDELKNTGTIDGIKGSLRSRLVGVLQRKDPSVFDGSGPSPGSQNLWQRAANSLYVEYLNHQNYGYALSVFQPECG-LTDQQVMSRDEISRVLCLERPSSLSQHLLRPDVGARNADGAPAPPSPLLLNILQAIAEVGASSARRETPTQTDDISGGASSLALRLAQIDEQHERAVATERLAPLRDAEERMASFQKECESRMRAEMLEHVRRVREHEVTQARLEEASKHRRNLAEAREDLERVHSDRLQKLRAREEAQIERVRAAEAALERAAYEHRQ 286
The following BLAST results are available for this feature:
BLAST of NO05G04900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_003061165.16.500e-1126.33basal body protein [Micromonas pusilla CCMP1545] >... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003360NSK003360Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04900.1NO05G04900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04900.1NO05G04900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04900 ID=NO05G04900|Name=NO05G04900|organism=Nannochloropsis oceanica|type=gene|length=2031bp
ATGGGGCCTACCTCCACTCCTACTCCTACGCCTCCTCTTTCTCCTGCTGG
CTTACCGCTAGATCCCAAGAAAGAAGAAAACGAAGATGAAGATCATGATA
GCAACCACCTTACCCTTTCTGAACTCAAAATGTTGGTGCGGAAAAAGCTG
CGGGAATCTGGCGCCATCGACGATATTTTAGGGCAGCTCCGCGGTCACCT
GTTGAGACCACTGGCACGAGCCAATATCCATGAAGACCAAAAAGTGCATC
CATGCCCCGGCATGTCTTTGGAAAACATGGTTCTCAATAGCCTTGTCGTC
GATTTCCTGCGGCACCAAAAATTTCGCCAGACATTGGCGGTGTTCTTGCC
TGAGAGTCACATGCTGGTCCAGCAACACCTCCTGTCACGACACGACCTGG
CTGAGACGTTGATGCTGGCGCAGAGCAAAGGTGAATCAGAACACAAAAGT
CTCCTTCACGCATTGGTGCTACCTTTTCAAAGAGCCGAGCCAGCCGTCGT
CTCCTCTTCCTCTTCCTCCCACACTCAAACCCAAACTGAGGCAGTTTCGA
CGACGACTACCACCCCTTCCCTTACACAACCCCCTTCCCCCCTCCACCAG
CACCAGCACGAGAAACATCTGAGTCGATTCCAACAAGAATGCGAAGCTCG
CGCCCAGAAGGAAATAGCTGCGGAGATATCTCATTTTCGGGAGACGGAGC
TGACACACCTCAGGTTGGAAGAGGCCGCGAAGCACCGACGGGAGCTATTA
ATTGTCCGCGAGGAAATGCAAGCGACGCAAGACCGGAAAGTGGAGCAGGC
ATGGGCACAAGCTAAAGAGGAGGAACGTCGTGTTCGTGTCCGGTTACAAG
CAGCGGAGGCAGCTCAATTCGAGGCGCGACAGGCGGTGTTACGTGATATG
GAGGCCATGCGACGACGCAAGGAAGAGGTGGAACGAGCAGAGGCACGAGC
CGCAGAACGACAGGCAATCCTAGACAAAGAACAATTCACGTTCAGAGAGC
AAATCGCTGCATGGGCTCGACAACGTGCGGGGGAGACAGCAGCTGCTCAC
CAAGATGGCGCGAAGGCATACGCATCGCAGCAACAGAGCCTGCAGGTCCA
ACAGCACCTTGTCCAGGAAGAGCTTCGAAAAGCACAAGCCGAAAGATTGG
TGTATCAGGAGCAGAGAGCAGATATGCAAGCATTACGAAGGCAAGTGGAG
GAAGCGAGGGGTTGCGTGGAAGAGGTGGAGATGTTGAGGAAGGAGAAGGA
GCGGTGGGTTGTAGCGAGAGAGCGGTTGCAGAGGCAGGAGGAGGAGGCCT
GGGCACGAGAGCAGGAGGCAACGGCCATGGTTAGAAATCTTGAGCGGACA
TGCGCAAATCTAGAGAATGAGAATGAGAAAACGCGGCAGCATGCGAGGGA
GGATGAGGCAGAGTTGGAGGGATTAAGGGAGGAAGTGAGGACGTTGCGGG
ATTTGTTAGCGTCGTCAACGAAGGCTTTGCATTGCTTGGGAGGGAGGGCA
GAGAGGAAACCAGGCATGGAGGCGGAGCAGGAACAAATAACAGGAAATCC
TCACATACCGTTGTCACTGTCTTTTCCAAAGCCCGAGTTCACACAACCAT
CACTATCACGGCCGGTGGCGATGCCGCCACTCACGTGTGCCCCGCTCATG
CCGATGCCGCCGCCTACATTCCTGTCATTGCCTGTGGCCTGCCACCTGCC
CCCGTCACCACTTCGATATCCACCTCATTTCGCTTCATCATCTGTTGCCC
CCTCTTCATTCAACCCTTCCTCTTCTTCATCCTGCTCCTCCTCCTCCTCG
ACTGCGATTGAATCGGCCATGCGTGCGTACGAGACGGAGGTACAAAAACT
GCAAGAGGTGCACGATGAATTCCTTATCCTGCATGGGAGAGGAAGCGATG
ATTCTGTTACCGCTGCTACCGCTGCTACCGCTGCTGTTGCTACTGCAGCA
GGCGCGGTCAAGAAGCAGGTGGATAGCGATGAAGCGGAGGAAAGGGAGGT
GGCTGAGGACGTGTGTGTGGGTGAAAAGTGA
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protein sequence of NO05G04900.1

>NO05G04900.1-protein ID=NO05G04900.1-protein|Name=NO05G04900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=677bp
MGPTSTPTPTPPLSPAGLPLDPKKEENEDEDHDSNHLTLSELKMLVRKKL
RESGAIDDILGQLRGHLLRPLARANIHEDQKVHPCPGMSLENMVLNSLVV
DFLRHQKFRQTLAVFLPESHMLVQQHLLSRHDLAETLMLAQSKGESEHKS
LLHALVLPFQRAEPAVVSSSSSSHTQTQTEAVSTTTTTPSLTQPPSPLHQ
HQHEKHLSRFQQECEARAQKEIAAEISHFRETELTHLRLEEAAKHRRELL
IVREEMQATQDRKVEQAWAQAKEEERRVRVRLQAAEAAQFEARQAVLRDM
EAMRRRKEEVERAEARAAERQAILDKEQFTFREQIAAWARQRAGETAAAH
QDGAKAYASQQQSLQVQQHLVQEELRKAQAERLVYQEQRADMQALRRQVE
EARGCVEEVEMLRKEKERWVVARERLQRQEEEAWAREQEATAMVRNLERT
CANLENENEKTRQHAREDEAELEGLREEVRTLRDLLASSTKALHCLGGRA
ERKPGMEAEQEQITGNPHIPLSLSFPKPEFTQPSLSRPVAMPPLTCAPLM
PMPPPTFLSLPVACHLPPSPLRYPPHFASSSVAPSSFNPSSSSSCSSSSS
TAIESAMRAYETEVQKLQEVHDEFLILHGRGSDDSVTAATAATAAVATAA
GAVKKQVDSDEAEEREVAEDVCVGEK*
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Synonyms
Publications