NO05G04870, NO05G04870 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G04870 vs. NCBI_GenBank
Match: GAQ79140.1 (hypothetical protein KFL_000250170 [Klebsormidium nitens]) HSP 1 Score: 108.2 bits (269), Expect = 4.900e-20 Identity = 82/251 (32.67%), Postives = 120/251 (47.81%), Query Frame = 0 Query: 58 PSFYDDVRKQAIDAVQAGLRDGLEQLEIEFP---ISPGRIDVSLGEFLDDSREWTREFVRPF--TPKGSKLWVIFPDGKEATLA-NERWGGVNFRI-----------IGIESAMKMPK--EEVCELQVVVTPGFNVQEYINMEKIQR-----PGVPMVVVNGNLDRIRGGYYPRLFYPGLYNVKERMLKFFEPVFYL---KPAQGGFIYRRYPEEWQQVLTYYDFRQQLRTVRRDGRTEEKKEVLRKVVET 282 P YD+V +Q + A L+DG + +EIEFP + D G + S REF + F T + K + FPD KE+ LA + G F+I IG E +KM + E+ VV P FNV E + +E++ + G P++V NG +DRIR GYYP FYP L + + L FE +Y+ K GG ++R YP WQ + + + QL ++ KEV ++ T Sbjct: 97 PEDYDEVLEQVRISTAAALKDGKQLIEIEFPTAGLDSTAGDAEGGMEMSMSMTAIREFCKMFVQTDQAPKTRIFFPDKKESVLARGGTFEGTPFKIDFLTSPSGLSDIGWEKKVKMTDRVQPSDEIFVVAYPYFNVNEMLAVEELWKDSAGPSGRPIIVFNGEMDRIRSGYYPPFFYPKLGQLAKTFLPKFEAAYYIHNFKGRYGGKLFRAYPGPWQ--VLRQNAQGQLEVIQESETMPTLKEVALNILPT 345
BLAST of NO05G04870 vs. NCBI_GenBank
Match: XP_021977687.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Helianthus annuus]) HSP 1 Score: 108.2 bits (269), Expect = 4.900e-20 Identity = 75/221 (33.94%), Postives = 113/221 (51.13%), Query Frame = 0 Query: 58 PSFYDDVRKQAIDAVQAGLRDGLEQLEIEFPIS-----PGRIDVSLGEFLDDSREWTREF----VRPFTPKGSKLWVIFPDGKEATLANE-RWGGVNFRI-----------IGIESAMKMPK--EEVCELQVVVTPGFNVQEYINMEKIQRPGV-----PMVVVNGNLDRIRGGYYPRLFYPGLYNVKERMLKFFEPVFYL---KPAQGGFIYRRYPEEWQ 248 P+ Y+++ QA +A QA L+DG++ +EIEFP + PG D G + S + REF V P K ++ + FP+ E A + +GG +F++ G A+KM +E EL +V P FNV E + +E++ R V M++ NG LDRIR GYYP FYP L + + + E V+Y+ K GG ++R YP W+ Sbjct: 60 PADYEELLDQAKEASQAALKDGIQLMEIEFPTAGLGSVPG--DGEGGIEMTGSMQLIREFCDLLVAP--EKATRTRIFFPEANEVQFARKSAFGGASFKLDYLTKPSFFQDFGFVEAVKMVDRVKEEDELFIVGYPYFNVNEMLVVEELYRDAVAATTRQMIIFNGELDRIRSGYYPSFFYPKLAALSKTLFPKMETVYYIHNFKGRNGGTLFRCYPGPWK 276
BLAST of NO05G04870 vs. NCBI_GenBank
Match: XP_023735077.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Lactuca sativa] >PLY72822.1 hypothetical protein LSAT_6X17621 [Lactuca sativa]) HSP 1 Score: 108.2 bits (269), Expect = 4.900e-20 Identity = 73/219 (33.33%), Postives = 109/219 (49.77%), Query Frame = 0 Query: 58 PSFYDDVRKQAIDAVQAGLRDGLEQLEIEFPIS-----PGRIDVSLGEFLDDSREWTREF--VRPFTPKGSKLWVIFPDGKEATLANER-WGGVNFRI-----------IGIESAMKMPK--EEVCELQVVVTPGFNVQEYINMEKIQRPGV-----PMVVVNGNLDRIRGGYYPRLFYPGLYNVKERMLKFFEPVFYL---KPAQGGFIYRRYPEEWQ 248 P Y+++ QA +A Q L DG++ +EIEFP + PG D G + S + REF + K +K + FP+ E A + +GG +F++ GI +KM +E EL +V P FNV E + +E++ R V M++ NG LDRIR GYYP FYP L + + + E V+Y+ K GG ++R YP W+ Sbjct: 64 PGDYEELLDQAKEATQIALNDGIQLMEIEFPTAGLESVPG--DGEGGIEMTGSMQLIREFCDLLVVPEKATKTRIFFPEANEVQFARKSVFGGASFKLDYLTKPSFFQDFGIVEKVKMVDRVKEEDELFIVGYPYFNVNEMLVVEELYREAVASTARQMIIFNGELDRIRSGYYPSFFYPKLAQLSKTLFPVMETVYYIHNFKGRNGGALFRCYPGPWK 280
BLAST of NO05G04870 vs. NCBI_GenBank
Match: PPS01164.1 (hypothetical protein GOBAR_AA19505 [Gossypium barbadense]) HSP 1 Score: 107.5 bits (267), Expect = 8.300e-20 Identity = 73/218 (33.49%), Postives = 109/218 (50.00%), Query Frame = 0 Query: 58 PSFYDDVRKQAIDAVQAGLRDGLEQLEIEFPIS-----PGRIDVSLGEFLDDSREWTREF--VRPFTPKGSKLWVIFPDGKEATLANERWGGVNFRI-----------IGIESAMKMPK--EEVCELQVVVTPGFNVQEYINMEKIQRPGV-----PMVVVNGNLDRIRGGYYPRLFYPGLYNVKERMLKFFEPVFYL---KPAQGGFIYRRYPEEWQ 248 P+ Y D+ KQA A + L+DG + +EIEFP + PG D G + S + REF + T K ++ + FP+ E A + + GV+F++ G +KM + EL +V P FNV E I +E++ + V M++ NG LDRIR GYYP FYP L + + +L E V+Y+ K GG ++R YP W+ Sbjct: 73 PNDYIDLLKQAKRATELALKDGKQLMEIEFPTAGLGSVPG--DGEGGNEMTGSMQLIREFCDILVATEKVTRTRIFFPEANEVKFARQVFEGVSFKLDYLTKPSFFEDFGFGEKVKMADRVKPEDELFLVGYPYFNVNEMIVVEELYKEAVMNTNRKMIIFNGELDRIRSGYYPSFFYPKLAALTKSLLPMMETVYYIHNFKGRNGGTLFRCYPGPWR 288
BLAST of NO05G04870 vs. NCBI_GenBank
Match: EOY25286.1 (Domain of Uncharacterized protein function isoform 1 [Theobroma cacao]) HSP 1 Score: 106.7 bits (265), Expect = 1.400e-19 Identity = 71/218 (32.57%), Postives = 107/218 (49.08%), Query Frame = 0 Query: 58 PSFYDDVRKQAIDAVQAGLRDGLEQLEIEFPIS-----PGRIDVSLGEFLDDSREWTREF--VRPFTPKGSKLWVIFPDGKEATLANERWGGVNFRI-----------IGIESAMKMPK--EEVCELQVVVTPGFNVQEYINMEKIQRPGV-----PMVVVNGNLDRIRGGYYPRLFYPGLYNVKERMLKFFEPVFYL---KPAQGGFIYRRYPEEWQ 248 PS Y D+ KQA A + L+DG + +EIEFP + PG D G + DS + REF + K + + FP+ E A + + G +F++ G +KM + EL +V P FNV E I +E++ + V +++ NG LDRIR GYYP FYP L + + +L E ++Y+ K GG ++R YP W+ Sbjct: 65 PSDYIDLLKQAKKATELALKDGKQLMEIEFPTAGLESVPG--DGEGGNEMTDSMQLIREFCDILVTPEKARQTRIFFPEANEVKFARQVFEGASFKLDYLTKPSFFEDFGFSEKVKMADRVKPDDELFLVGYPYFNVNEMIVVEELYKEAVVNTTRKLIIFNGELDRIRSGYYPSFFYPKLAALTKTLLPMMETIYYIHNFKGRNGGTLFRCYPGPWR 280
BLAST of NO05G04870 vs. NCBI_GenBank
Match: XP_017972858.1 (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Theobroma cacao]) HSP 1 Score: 106.7 bits (265), Expect = 1.400e-19 Identity = 71/218 (32.57%), Postives = 107/218 (49.08%), Query Frame = 0 Query: 58 PSFYDDVRKQAIDAVQAGLRDGLEQLEIEFPIS-----PGRIDVSLGEFLDDSREWTREF--VRPFTPKGSKLWVIFPDGKEATLANERWGGVNFRI-----------IGIESAMKMPK--EEVCELQVVVTPGFNVQEYINMEKIQRPGV-----PMVVVNGNLDRIRGGYYPRLFYPGLYNVKERMLKFFEPVFYL---KPAQGGFIYRRYPEEWQ 248 PS Y D+ KQA A + L+DG + +EIEFP + PG D G + DS + REF + K + + FP+ E A + + G +F++ G +KM + EL +V P FNV E I +E++ + V +++ NG LDRIR GYYP FYP L + + +L E ++Y+ K GG ++R YP W+ Sbjct: 62 PSDYIDLLKQAKKATELALKDGKQLMEIEFPTAGLESVPG--DGEGGNEMTDSMQLIREFCDILVTPEKARQTRIFFPEANEVKFARQVFEGASFKLDYLTKPSFFEDFGFSEKVKMADRVKPDDELFLVGYPYFNVNEMIVVEELYKEAVVNTTRKLIIFNGELDRIRSGYYPSFFYPKLAALTKTLLPMMETIYYIHNFKGRNGGTLFRCYPGPWR 277
BLAST of NO05G04870 vs. NCBI_GenBank
Match: GAX09652.1 (hypothetical protein FisN_19Lh117 [Fistulifera solaris]) HSP 1 Score: 106.7 bits (265), Expect = 1.400e-19 Identity = 84/307 (27.36%), Postives = 130/307 (42.35%), Query Frame = 0 Query: 49 PISKLPAIGPSFYDDVRKQAIDAVQAGLRDGLEQLEIEFP--ISPGRIDVSLGEF-----LDDSREWTREFVRPFTPKGSKLWVIFPDGKEATLANERWGG------------VNFRIIGIESAMKMPKE--------------------------------EVCELQVVVTPGFN--VQEYINMEKIQRP---GVPMVVVNGNLDRIRGGYYPRLFYPGLYNVKERMLKFFEPVFYLKPAQG----GFIYRRYPEEWQQVLTYYDFRQQLRTVRRDGRTEEKKEVLRKVVETTRERPAYNDVVNAL 296 P K A G + RK A A+ +RDG QLEI+FP I G + +F L+ +R+W + W+I PD KE LA + WGG + ++ + ++ K ++ L +V PG V+++IN+E++ R +VNG LD++R GYYP LF+P L + FE VF+LKP G++YR YPE WQ +L + +Q+ ++ V V T+ +RP+Y+D V A+ Sbjct: 46 PFEKSVAKGLDIQGEFRKIAAKAILQAIRDGQTQLEIDFPPLIGGGSSKTAFDDFDNIQELNANRDWCVPLAPQIVLPSKQQWLILPDDKECELAQKEWGGGQLFRRSAKFTSIRAALVQVAGESQVTKAWGSTIAATLNKLSGGDGILADSSLLDDLSDTVDLERLYLVCQPGNGGPVEDWINVEQLHRSSPRNTVTCIVNGALDKVRDGYYPALFFPALAKTVP-FYQDFEAVFFLKPISDKGLYGWLYRVYPEPWQVILQIPEQQQK--------GSQSVISVQELVALTSTKRPSYSDAVQAM 343
BLAST of NO05G04870 vs. NCBI_GenBank
Match: CEM15914.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 106.3 bits (264), Expect = 1.800e-19 Identity = 71/227 (31.28%), Postives = 118/227 (51.98%), Query Frame = 0 Query: 63 DVRKQAIDAVQAGLRDGLEQLEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPKGSKLWVIFPDGKEATLANERWGGVNFRIIGIESAMKMPKE------EVCELQVVVTPGF--NVQEYINMEKIQRPGVPMVVVNGNLDRIRGGYYPRLFYPGLYNVKERMLKFFEPVFYLKPAQGGF------IYRRYPEEWQQVLTYYDFRQQLRTVRRDGRTEEKKEVL 276 ++ +QA ++ A L+DG++++ IEFP+ P + DVSLGE LD++ ++ + R + ++F D +E LA E + + I+S ++ K+ LQ + PG+ EY+++EK P V++NG L+R+R GYYPR FYPG+ +R FE + + F + RRYPE+W +V+ D RQ++ D E+ E L Sbjct: 82 EMARQAAESTLAALKDGIDKICIEFPVKPEKGDVSLGETLDETVRFSSMWSRRLGAIPNGHLILFADPQEQRLALEGF-DPTADVSNIDSYIEALKKGSDAAPSTTGLQTFMCPGWTGRYTEYVSIEKHCANIAPTVIINGQLERLRRGYYPRFFYPGVNAAMDRWYSKFEYTYVIIREATPFADRSLWVIRRYPEDW-RVVKVQDGRQEILLETPDKPDEDAVERL 306
BLAST of NO05G04870 vs. NCBI_GenBank
Match: PPD93854.1 (hypothetical protein GOBAR_DD09114 [Gossypium barbadense]) HSP 1 Score: 105.9 bits (263), Expect = 2.400e-19 Identity = 72/218 (33.03%), Postives = 108/218 (49.54%), Query Frame = 0 Query: 58 PSFYDDVRKQAIDAVQAGLRDGLEQLEIEFPIS-----PGRIDVSLGEFLDDSREWTREF--VRPFTPKGSKLWVIFPDGKEATLANERWGGVNFRI-----------IGIESAMKMPK--EEVCELQVVVTPGFNVQEYINMEKIQRPGV-----PMVVVNGNLDRIRGGYYPRLFYPGLYNVKERMLKFFEPVFYL---KPAQGGFIYRRYPEEWQ 248 P+ Y D+ KQA A + L+DG + +EIEFP + PG D G + S + REF + T K ++ + FP+ E A + + G +F++ G +KM + EL +V P FNV E I +E++ + V M++ NG LDRIR GYYP FYP L + + +L E V+Y+ K GG ++R YP W+ Sbjct: 73 PNDYIDLLKQAKRATELALKDGKQLMEIEFPTAGLGSVPG--DGEGGNEMTGSMQLIREFCDILVATEKVTRTRIFFPEANEVKFARQVFEGASFKLDYLTKPSFFEDFGFGEKVKMADRVKPEDELFLVGYPYFNVNEMIVVEELYKEAVMNTNRKMIIFNGELDRIRSGYYPSFFYPKLAALTKSLLPMMETVYYIHNFKGRNGGTLFRCYPGPWR 288
BLAST of NO05G04870 vs. NCBI_GenBank
Match: GAX19540.1 (hypothetical protein FisN_19Hh117 [Fistulifera solaris]) HSP 1 Score: 105.5 bits (262), Expect = 3.100e-19 Identity = 85/315 (26.98%), Postives = 132/315 (41.90%), Query Frame = 0 Query: 49 PISKLPAIGPSFYDDVRKQAIDAVQAGLRDGLEQLEIEFP--ISPGRIDVSLGEF-----LDDSREWTREFVRPFTPKGSKLWVIFPDGKEATLANERWGG------------VNFRIIGIESAMKMPK---------------------------------EEVCELQVVVTPGFN--VQEYINMEKIQRPG---VPMVVVNGNLDRIRGGYYPRLFYPGLYNVKERMLKFFEPVFYLKPAQG----GFIYRRYPEEWQQVLTYYDFRQQLRTVRRDGRTEEKKEVLRKVVETTRERPAYNDVVNALKKESARM 303 P K A G + RK A A+ ++DG QLEI+FP + G + +F L+ +R+W + W+I PD KE LA + WGG + ++ + K+ K + L +V PG V+++IN+E++ R VVNG LD++R GYYP LF+P L + FE VF+LKP G++YR YPE WQ +L + +Q+ ++ V V T+ +RP+Y+D V A+ S ++ Sbjct: 47 PFEKSVAKGLDIQGEFRKIASKAILQAIKDGQTQLEIDFPPLLGGGSSKTAFDDFDNIQELNANRDWCVPLAPLIAASKQQQWLILPDDKECELAQKEWGGGQLFRRAAKFTSIRAALVQVAGEQKVTKAWGSTIAATFNKLSGGDGILADSRLLDDLSDAGDSEARLYLVCQPGNGGPVEDWINVEQLHRSSPRQTVTCVVNGALDKVRDGYYPVLFFPALAKTVP-FYRDFEAVFFLKPISDKGLYGWLYRVYPEPWQVILQIPEQQQK--------GSQTVISVQDIVALTSTKRPSYSDAVQAMVAASKKI 352 The following BLAST results are available for this feature:
BLAST of NO05G04870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G04870 ID=NO05G04870|Name=NO05G04870|organism=Nannochloropsis oceanica|type=gene|length=1914bpback to top protein sequence of NO05G04870.1 >NO05G04870.1-protein ID=NO05G04870.1-protein|Name=NO05G04870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=330bpback to top Synonyms
Publications
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