NO05G04740, NO05G04740 (gene) Nannochloropsis oceanica

Overview
NameNO05G04740
Unique NameNO05G04740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1201
Alignment locationchr5:1232707..1233907 +

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Properties
Property NameValue
DescriptionNEDD4-binding protein 2-like 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1232707..1233907 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR026568NEDD4-bind_pro_2-like_2
IPR003593AAA+_ATPase
Homology
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BLAST of NO05G04740 vs. NCBI_GenBank
Match: EWM27917.1 (hypothetical protein Naga_100285g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 159.5 bits (402), Expect = 1.700e-35
Identity = 99/146 (67.81%), Postives = 119/146 (81.51%), Query Frame = 0 
Query:  157 RAKAFLDEGRSVIVDNTNIQAWQPREYVRHAIRLGVQVEFVRASGKFNNVHGVPLEKVEKMRQTMEVLTMESVLNSLAPAERRGLRGEGGREEMREAGRMAAMQGPLFSLPGGXXXXXXXXXXXXXXXXTREEMLERSLARMQIGR 303
            RAKAFLDEGRSV+VDNTNI+AW+PREYVRHAI LGV+VEFVRA G++ N+HGVP EKVE MR  +E LTM+SVLN+LAPAERR +  E G+E +R+AGR++  QG   S    XXXXXXXXXXXXXXXX  EE LER+LA ++ G+
Sbjct:   14 RAKAFLDEGRSVVVDNTNIEAWEPREYVRHAIHLGVKVEFVRAEGRYGNLHGVPAEKVEMMRARLERLTMDSVLNALAPAERREIEQERGKEVLRDAGRISVRQGQWISF--XXXXXXXXXXXXXXXXXXXEEALERALALLKFGK 157
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BLAST of NO05G04740 vs. NCBI_GenBank
Match: WP_045598499.1 (ATP-binding protein [Vibrio vulnificus] >ANN26654.1 hypothetical protein FORC17_1591 [Vibrio vulnificus] >AUJ35009.1 AAA family ATPase [Vibrio vulnificus])

HSP 1 Score: 104.0 bits (258), Expect = 8.400e-19
Identity = 51/125 (40.80%), Postives = 78/125 (62.40%), Query Frame = 0 
Query:   95 LVIMQGPPGSGKTTLAHQIVKRVQAPPGGMVICSTDTYSLTRDGRYIWNPATLEENHGKNLERAKAFLDEGRSVIVDNTNIQAWQPREYVRHAIRLGVQVEFVRASGKFNNVHGVPLEKVEKMRQ 220
            L +++G PGSGK+TLA Q+ K+  A     V   TD Y + + GRY ++P  LE+ H   L +   +L +GR+VIV NT +Q W+ + Y+R A R G  VE +  +G++ ++H VP + +EKMRQ
Sbjct:    7 LTLIRGLPGSGKSTLAQQLAKQTHA-----VHLETDMYFVDQQGRYQFDPTRLEQAHRWCLNKVCQYLKQGRTVIVSNTFVQHWEMKSYLRFAERHGFSVEILVCTGEYGSIHDVPAQTIEKMRQ 126
[Close]
BLAST of NO05G04740 vs. NCBI_GenBank
Match: WP_026130751.1 (ATP-binding protein [Vibrio vulnificus] >EWS67953.1 shikimate kinase [Vibrio vulnificus BAA87] >KFK58329.1 ATPase AAA [Vibrio vulnificus] >KFK66537.1 ATPase AAA [Vibrio vulnificus] >KFK69697.1 ATPase AAA [Vibrio vulnificus] >POC45213.1 ATP-binding protein [Vibrio vulnificus] >POC66980.1 ATP-binding protein [Vibrio vulnificus])

HSP 1 Score: 104.0 bits (258), Expect = 8.400e-19
Identity = 51/125 (40.80%), Postives = 79/125 (63.20%), Query Frame = 0 
Query:   95 LVIMQGPPGSGKTTLAHQIVKRVQAPPGGMVICSTDTYSLTRDGRYIWNPATLEENHGKNLERAKAFLDEGRSVIVDNTNIQAWQPREYVRHAIRLGVQVEFVRASGKFNNVHGVPLEKVEKMRQ 220
            L +++G PGSGK+TLA Q+ K+  A     V   TD Y + + GRY ++P  LE+ H   L +   +L +GR+VIV NT +Q W+ + Y+R A R G+ VE +  +G++ ++H VP + +EKMRQ
Sbjct:    7 LTLIRGLPGSGKSTLAQQLAKQTHA-----VHLETDMYFVDQQGRYQFDPLCLEQAHRWCLNKVCQYLKQGRAVIVSNTFVQHWEMKPYLRFAERHGLSVEILVCTGEYGSIHDVPAQTIEKMRQ 126
[Close]
BLAST of NO05G04740 vs. NCBI_GenBank
Match: WP_011080518.1 (ATP-binding protein [Vibrio vulnificus] >AAO11023.1 hypothetical protein VV1_2676 [Vibrio vulnificus CMCP6])

HSP 1 Score: 104.0 bits (258), Expect = 8.400e-19
Identity = 51/125 (40.80%), Postives = 78/125 (62.40%), Query Frame = 0 
Query:   95 LVIMQGPPGSGKTTLAHQIVKRVQAPPGGMVICSTDTYSLTRDGRYIWNPATLEENHGKNLERAKAFLDEGRSVIVDNTNIQAWQPREYVRHAIRLGVQVEFVRASGKFNNVHGVPLEKVEKMRQ 220
            L +++G PGSGK+TLA Q+ K+  A     V   TD Y + + GRY ++P  LE+ H   L +   +L +GR+VIV NT +Q W+ + Y+R A R G  VE +  +G++ ++H VP + +EKMRQ
Sbjct:    7 LTLIRGLPGSGKSTLAQQLAKQTHA-----VHLETDMYFVDQQGRYQFDPTRLEQAHRWCLNKVCQYLKQGRAVIVSNTFVQHWEMKSYLRFAERHGFSVEILVCTGEYGSIHDVPAQTIEKMRQ 126
[Close]
BLAST of NO05G04740 vs. NCBI_GenBank
Match: WP_108677455.1 (ATP-binding protein [Vibrio vulnificus] >PUZ81893.1 AAA family ATPase [Vibrio vulnificus])

HSP 1 Score: 104.0 bits (258), Expect = 8.400e-19
Identity = 51/125 (40.80%), Postives = 78/125 (62.40%), Query Frame = 0 
Query:   95 LVIMQGPPGSGKTTLAHQIVKRVQAPPGGMVICSTDTYSLTRDGRYIWNPATLEENHGKNLERAKAFLDEGRSVIVDNTNIQAWQPREYVRHAIRLGVQVEFVRASGKFNNVHGVPLEKVEKMRQ 220
            L +++G PGSGK+TLA Q+ K+  A     V   TD Y + + GRY ++P  LE+ H   L +   +L +GR+VIV NT +Q W+ + Y+R A R G  VE +  +G++ ++H VP + +EKMRQ
Sbjct:    7 LTLIRGLPGSGKSTLAQQLAKQTHA-----VHLETDMYFVDQQGRYQFDPTRLEQAHRWCLNKVCQYLKQGRTVIVSNTFVQHWEMKSYLRFAERHGFSVEILVCTGEYGSIHDVPAQTIEKMRQ 126
[Close]
BLAST of NO05G04740 vs. NCBI_GenBank
Match: WP_053543394.1 (ATP-binding protein [Vibrio vulnificus] >KOR96097.1 AAA family ATPase [Vibrio vulnificus])

HSP 1 Score: 103.6 bits (257), Expect = 1.100e-18
Identity = 51/125 (40.80%), Postives = 79/125 (63.20%), Query Frame = 0 
Query:   95 LVIMQGPPGSGKTTLAHQIVKRVQAPPGGMVICSTDTYSLTRDGRYIWNPATLEENHGKNLERAKAFLDEGRSVIVDNTNIQAWQPREYVRHAIRLGVQVEFVRASGKFNNVHGVPLEKVEKMRQ 220
            L +++G PGSGK+TLA Q+ K+  A     V   TD Y + + GRY ++P  LE+ H   L +   +L +GR+VIV NT +Q W+ + Y+R A R G+ VE +  +G++ ++H VP + +EKMRQ
Sbjct:    7 LTLIRGLPGSGKSTLAQQLAKQTHA-----VHLETDMYFVDQQGRYQFDPTRLEQAHRWCLNKVCQYLKQGRAVIVSNTFVQHWEMKPYLRFAERHGLSVETLVCTGEYGSIHDVPAQTIEKMRQ 126
[Close]
BLAST of NO05G04740 vs. NCBI_GenBank
Match: XP_023960852.1 (NEDD4-binding protein 2-like 2 isoform X2 [Chrysemys picta bellii])

HSP 1 Score: 103.6 bits (257), Expect = 1.100e-18
Identity = 66/164 (40.24%), Postives = 98/164 (59.76%), Query Frame = 0 
Query:   90 RSHQLLVIMQGPPGSGKTTLAHQIVKRVQAPPGGMVICSTDTYSLTRDGRYIWNPATLEENHGKNLERAKAFLDEGRS-VIVDNTNIQAWQPREYVRHAIRLGVQVEFVRAS--GKFN-------NVHGVPLEKVEKMRQTMEV-LTMESVLNSLAPAERRGLR 243
            RS +LL+I++G PGSGKTTL+H ++ + +      V+ STD Y   +DG Y +N A L + H  N +RAK  +D+GRS +I+DNTN QAW+ + YV  A+  G +VEF       KF+       N HGVP EK+ +M +  E  +++  V+NS+ P  +   R
Sbjct:  464 RSQKLLLILRGLPGSGKTTLSHILLGQNR----DGVVFSTDDYFRQQDG-YTYNVAQLGDAHDWNQKRAKQAMDQGRSPIIIDNTNTQAWEMKPYVETALGKGYRVEFHEPDTWWKFDPEELEKRNKHGVPREKIAQMLERYEYQMSISVVMNSVEPPHKNTQR 622
[Close]
BLAST of NO05G04740 vs. NCBI_GenBank
Match: XP_023960854.1 (NEDD4-binding protein 2-like 2 isoform X3 [Chrysemys picta bellii])

HSP 1 Score: 103.6 bits (257), Expect = 1.100e-18
Identity = 66/164 (40.24%), Postives = 98/164 (59.76%), Query Frame = 0 
Query:   90 RSHQLLVIMQGPPGSGKTTLAHQIVKRVQAPPGGMVICSTDTYSLTRDGRYIWNPATLEENHGKNLERAKAFLDEGRS-VIVDNTNIQAWQPREYVRHAIRLGVQVEFVRAS--GKFN-------NVHGVPLEKVEKMRQTMEV-LTMESVLNSLAPAERRGLR 243
            RS +LL+I++G PGSGKTTL+H ++ + +      V+ STD Y   +DG Y +N A L + H  N +RAK  +D+GRS +I+DNTN QAW+ + YV  A+  G +VEF       KF+       N HGVP EK+ +M +  E  +++  V+NS+ P  +   R
Sbjct:  465 RSQKLLLILRGLPGSGKTTLSHILLGQNR----DGVVFSTDDYFRQQDG-YTYNVAQLGDAHDWNQKRAKQAMDQGRSPIIIDNTNTQAWEMKPYVETALGKGYRVEFHEPDTWWKFDPEELEKRNKHGVPREKIAQMLERYEYQMSISVVMNSVEPPHKNTQR 623
[Close]
BLAST of NO05G04740 vs. NCBI_GenBank
Match: XP_023960850.1 (NEDD4-binding protein 2-like 2 isoform X1 [Chrysemys picta bellii])

HSP 1 Score: 103.6 bits (257), Expect = 1.100e-18
Identity = 66/164 (40.24%), Postives = 98/164 (59.76%), Query Frame = 0 
Query:   90 RSHQLLVIMQGPPGSGKTTLAHQIVKRVQAPPGGMVICSTDTYSLTRDGRYIWNPATLEENHGKNLERAKAFLDEGRS-VIVDNTNIQAWQPREYVRHAIRLGVQVEFVRAS--GKFN-------NVHGVPLEKVEKMRQTMEV-LTMESVLNSLAPAERRGLR 243
            RS +LL+I++G PGSGKTTL+H ++ + +      V+ STD Y   +DG Y +N A L + H  N +RAK  +D+GRS +I+DNTN QAW+ + YV  A+  G +VEF       KF+       N HGVP EK+ +M +  E  +++  V+NS+ P  +   R
Sbjct:  465 RSQKLLLILRGLPGSGKTTLSHILLGQNR----DGVVFSTDDYFRQQDG-YTYNVAQLGDAHDWNQKRAKQAMDQGRSPIIIDNTNTQAWEMKPYVETALGKGYRVEFHEPDTWWKFDPEELEKRNKHGVPREKIAQMLERYEYQMSISVVMNSVEPPHKNTQR 623
[Close]
BLAST of NO05G04740 vs. NCBI_GenBank
Match: XP_007889469.1 (PREDICTED: uncharacterized protein LOC103177205 isoform X1 [Callorhinchus milii])

HSP 1 Score: 103.2 bits (256), Expect = 1.400e-18
Identity = 68/156 (43.59%), Postives = 93/156 (59.62%), Query Frame = 0 
Query:   91 SHQLLVIMQGPPGSGKTTLAHQIVKRVQAPPGGMVICSTDTYSLTRDGRYIWNPATLEENHGKNLERAKAFLDEG-RSVIVDNTNIQAWQPREYVRHAIRLGVQVEFVRAS--GKFN-------NVHGVPLEKVEKMRQTME-VLTMESVLNSLAP 236
            ++++L+ M+G PGSGKTTL+  I+   Q P G  V+ +TD Y L RDG Y +N + L E H  N ERAK  +DEG   VI+DNTNIQAW+ + YV  A   G +V+F       KF+       N H VP EK+ +M +  E  ++ E VLNS+ P
Sbjct:  378 NYKVLIFMRGLPGSGKTTLSQDIL--AQNPSG--VVLTTDDYFL-RDGSYWFNSSLLGEAHEWNQERAKQIMDEGVTPVIIDNTNIQAWEMKPYVEMAADRGYRVDFQEPDTWWKFDVSELEKRNKHRVPREKIIQMMERFEHPISSEIVLNSVEP 528
The following BLAST results are available for this feature:
BLAST of NO05G04740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27917.11.700e-3567.81hypothetical protein Naga_100285g1, partial [Nanno... [more]
WP_045598499.18.400e-1940.80ATP-binding protein [Vibrio vulnificus] >ANN26654.... [more]
WP_026130751.18.400e-1940.80ATP-binding protein [Vibrio vulnificus] >EWS67953.... [more]
WP_011080518.18.400e-1940.80ATP-binding protein [Vibrio vulnificus] >AAO11023.... [more]
WP_108677455.18.400e-1940.80ATP-binding protein [Vibrio vulnificus] >PUZ81893.... [more]
WP_053543394.11.100e-1840.80ATP-binding protein [Vibrio vulnificus] >KOR96097.... [more]
XP_023960852.11.100e-1840.24NEDD4-binding protein 2-like 2 isoform X2 [Chrysem... [more]
XP_023960854.11.100e-1840.24NEDD4-binding protein 2-like 2 isoform X3 [Chrysem... [more]
XP_023960850.11.100e-1840.24NEDD4-binding protein 2-like 2 isoform X1 [Chrysem... [more]
XP_007889469.11.400e-1843.59PREDICTED: uncharacterized protein LOC103177205 is... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003376NSK003376Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04740.1NO05G04740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100285g1gene2637Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04740.1NO05G04740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04740 ID=NO05G04740|Name=NO05G04740|organism=Nannochloropsis oceanica|type=gene|length=1201bp
ATGCACCCAGCCACCTCCTACCACCACCATCCGCCCTCCTCCTACCTCCC
CTCTTCCGTCCACTCCTCCACCCACAACCCCTCTTCCTCCTCCTTTTCCC
CCCTGTCCGAGTCCAAAGATCTCCTCCATTCCTACTACCTGTCCCACCAG
CCCAATGCCCTCGACCCTCGTTTCCTGAATCCCGCCCTCCCCCCCGCCCT
CATCCCATGCTGCTGCCCCCTCTGCTTACGCGTGCGCGCCTCCCCTTCGC
TCTTCCTTGCCCCCGATCGCTCACATCAACTCTTGGTCATCATGCAAGGC
CCACCGGGATCGGGCAAGACGACACTGGCCCATCAAATAGTCAAGAGAGT
GCAGGCCCCGCCGGGCGGCATGGTGATATGCTCCACCGACACCTACTCCC
TGACAAGGGATGGGAGGTACATATGGAATCCGGCCACGCTCGAGGAGAAT
CATGGGAAGAATCTAGgtatgctgggcgggagggagggagggagggaggg
agggagggattgggggtctgacggtggttactcatttgatgacaggctcc
atcacgtactcacttcaccccttccctccctccctccctccctccctccc
tcccttccccgcgcccacagAGCGCGCCAAGGCCTTTCTGGACGAAGGAC
GAAGCGTCATTGTCGACAACACCAACATCCAAGCATGGCAGCCGAGGGAA
TACGTCCGTCACGCCATCCGCCTGGGGGTCCAAGTCGAGTTTGTGCGGGC
CTCGGGGAAATTTAATAACGTCCACGGAGTGCCGTTGGAAAAAGTGGAGA
AAATGAGgtctgttgtaacggctttggaacggcatgggagggaagaagga
atgtaattaattggttgctctcttcccgctattctgacctcgccttgtcc
gccttcgttccctccctccctccctccctccctccctccctgtagGCAAA
CCATGGAGGTACTCACGATGGAGAGCGTGTTAAACTCATTGGCACCAGCA
GAAAGGAGAGGGCTGCGAGGGGAGGGAGGGAGAGAGGAAATGAGGGAGGC
AGGGCGGATGGCGGCGATGCAAGGACCGTTATTTTCCCTCCCGGGAGGGG
GGAGGGGAAGAGGGGTTGGCGGAGGAAGGGGGAGAGGGAGGGGGGACACA
CGGGAGGAGATGCTGGAACGATCATTGGCAAGGATGCAGATCGGGAGGTG
A
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protein sequence of NO05G04740.1

>NO05G04740.1-protein ID=NO05G04740.1-protein|Name=NO05G04740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MHPATSYHHHPPSSYLPSSVHSSTHNPSSSSFSPLSESKDLLHSYYLSHQ
PNALDPRFLNPALPPALIPCCCPLCLRVRASPSLFLAPDRSHQLLVIMQG
PPGSGKTTLAHQIVKRVQAPPGGMVICSTDTYSLTRDGRYIWNPATLEEN
HGKNLERAKAFLDEGRSVIVDNTNIQAWQPREYVRHAIRLGVQVEFVRAS
GKFNNVHGVPLEKVEKMRQTMEVLTMESVLNSLAPAERRGLRGEGGREEM
REAGRMAAMQGPLFSLPGGGRGRGVGGGRGRGRGDTREEMLERSLARMQI
GR*
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Synonyms
Publications