NO05G04740.1, NO05G04740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04740.1
Unique NameNO05G04740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length909
Alignment locationchr5:1232707..1233907 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1232707..1233907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04740.1 vs.
Match: EWM27917.1 (hypothetical protein Naga_100285g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 175.6 bits (444), Expect = 2.300e-40
Identity = 93/147 (63.27%), Postives = 115/147 (78.23%), Query Frame = 0 
Query:  157 RAKAFLDEGRSVIVDNTNIQAWQPREYVRHAIRLGVQVEFVRASGKFNNVHGVPLEKVEKMRQTMEVLTMESVLNSLAPAERRGLRGEGGREEMREAGRMAAMQGPLFSLP-GGGRGRGVGGGRGRGRGDTREEMLERSLARMQIGR 303
            RAKAFLDEGRSV+VDNTNI+AW+PREYVRHAI LGV+VEFVRA G++ N+HGVP EKVE MR  +E LTM+SVLN+LAPAERR +  E G+E +R+AGR++  QG   S   GGGR RG GGGR      ++EE LER+LA ++ G+
Sbjct:   14 RAKAFLDEGRSVVVDNTNIEAWEPREYVRHAIHLGVKVEFVRAEGRYGNLHGVPAEKVEMMRARLERLTMDSVLNALAPAERREIEQERGKEVLRDAGRISVRQGQWISFGGGGGRERGGGGGRDE---TSQEEALERALALLKFGK 157
The following BLAST results are available for this feature:
BLAST of NO05G04740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27917.12.300e-4063.27hypothetical protein Naga_100285g1, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04740NO05G04740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04740.1NO05G04740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04740.1.cds1NO05G04740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04740.1.cds2NO05G04740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04740.1.cds3NO05G04740.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04740.1 ID=NO05G04740.1|Name=NO05G04740.1|organism=Nannochloropsis oceanica|type=mRNA|length=909bp
ATGCACCCAGCCACCTCCTACCACCACCATCCGCCCTCCTCCTACCTCCC
CTCTTCCGTCCACTCCTCCACCCACAACCCCTCTTCCTCCTCCTTTTCCC
CCCTGTCCGAGTCCAAAGATCTCCTCCATTCCTACTACCTGTCCCACCAG
CCCAATGCCCTCGACCCTCGTTTCCTGAATCCCGCCCTCCCCCCCGCCCT
CATCCCATGCTGCTGCCCCCTCTGCTTACGCGTGCGCGCCTCCCCTTCGC
TCTTCCTTGCCCCCGATCGCTCACATCAACTCTTGGTCATCATGCAAGGC
CCACCGGGATCGGGCAAGACGACACTGGCCCATCAAATAGTCAAGAGAGT
GCAGGCCCCGCCGGGCGGCATGGTGATATGCTCCACCGACACCTACTCCC
TGACAAGGGATGGGAGGTACATATGGAATCCGGCCACGCTCGAGGAGAAT
CATGGGAAGAATCTAGAGCGCGCCAAGGCCTTTCTGGACGAAGGACGAAG
CGTCATTGTCGACAACACCAACATCCAAGCATGGCAGCCGAGGGAATACG
TCCGTCACGCCATCCGCCTGGGGGTCCAAGTCGAGTTTGTGCGGGCCTCG
GGGAAATTTAATAACGTCCACGGAGTGCCGTTGGAAAAAGTGGAGAAAAT
GAGGCAAACCATGGAGGTACTCACGATGGAGAGCGTGTTAAACTCATTGG
CACCAGCAGAAAGGAGAGGGCTGCGAGGGGAGGGAGGGAGAGAGGAAATG
AGGGAGGCAGGGCGGATGGCGGCGATGCAAGGACCGTTATTTTCCCTCCC
GGGAGGGGGGAGGGGAAGAGGGGTTGGCGGAGGAAGGGGGAGAGGGAGGG
GGGACACACGGGAGGAGATGCTGGAACGATCATTGGCAAGGATGCAGATC
GGGAGGTGA
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protein sequence of NO05G04740.1

>NO05G04740.1-protein ID=NO05G04740.1-protein|Name=NO05G04740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MHPATSYHHHPPSSYLPSSVHSSTHNPSSSSFSPLSESKDLLHSYYLSHQ
PNALDPRFLNPALPPALIPCCCPLCLRVRASPSLFLAPDRSHQLLVIMQG
PPGSGKTTLAHQIVKRVQAPPGGMVICSTDTYSLTRDGRYIWNPATLEEN
HGKNLERAKAFLDEGRSVIVDNTNIQAWQPREYVRHAIRLGVQVEFVRAS
GKFNNVHGVPLEKVEKMRQTMEVLTMESVLNSLAPAERRGLRGEGGREEM
REAGRMAAMQGPLFSLPGGGRGRGVGGGRGRGRGDTREEMLERSLARMQI
GR*
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mRNA from alignment at chr5:1232707..1233907+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04740.1 ID=NO05G04740.1|Name=NO05G04740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1201bp|location=Sequence derived from alignment at chr5:1232707..1233907+ (Nannochloropsis oceanica)
ATGCACCCAGCCACCTCCTACCACCACCATCCGCCCTCCTCCTACCTCCC
CTCTTCCGTCCACTCCTCCACCCACAACCCCTCTTCCTCCTCCTTTTCCC
CCCTGTCCGAGTCCAAAGATCTCCTCCATTCCTACTACCTGTCCCACCAG
CCCAATGCCCTCGACCCTCGTTTCCTGAATCCCGCCCTCCCCCCCGCCCT
CATCCCATGCTGCTGCCCCCTCTGCTTACGCGTGCGCGCCTCCCCTTCGC
TCTTCCTTGCCCCCGATCGCTCACATCAACTCTTGGTCATCATGCAAGGC
CCACCGGGATCGGGCAAGACGACACTGGCCCATCAAATAGTCAAGAGAGT
GCAGGCCCCGCCGGGCGGCATGGTGATATGCTCCACCGACACCTACTCCC
TGACAAGGGATGGGAGGTACATATGGAATCCGGCCACGCTCGAGGAGAAT
CATGGGAAGAATCTAGGTATGCTGGGCGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGATTGGGGGTCTGACGGTGGTTACTCATTTGATGACAGGCTCC
ATCACGTACTCACTTCACCCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTTCCCCGCGCCCACAGAGCGCGCCAAGGCCTTTCTGGACGAAGGAC
GAAGCGTCATTGTCGACAACACCAACATCCAAGCATGGCAGCCGAGGGAA
TACGTCCGTCACGCCATCCGCCTGGGGGTCCAAGTCGAGTTTGTGCGGGC
CTCGGGGAAATTTAATAACGTCCACGGAGTGCCGTTGGAAAAAGTGGAGA
AAATGAGGTCTGTTGTAACGGCTTTGGAACGGCATGGGAGGGAAGAAGGA
ATGTAATTAATTGGTTGCTCTCTTCCCGCTATTCTGACCTCGCCTTGTCC
GCCTTCGTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGTAGGCAAA
CCATGGAGGTACTCACGATGGAGAGCGTGTTAAACTCATTGGCACCAGCA
GAAAGGAGAGGGCTGCGAGGGGAGGGAGGGAGAGAGGAAATGAGGGAGGC
AGGGCGGATGGCGGCGATGCAAGGACCGTTATTTTCCCTCCCGGGAGGGG
GGAGGGGAAGAGGGGTTGGCGGAGGAAGGGGGAGAGGGAGGGGGGACACA
CGGGAGGAGATGCTGGAACGATCATTGGCAAGGATGCAGATCGGGAGGTG
A
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Coding sequence (CDS) from alignment at chr5:1232707..1233907+

>NO05G04740.1 ID=NO05G04740.1|Name=NO05G04740.1|organism=Nannochloropsis oceanica|type=CDS|length=909bp|location=Sequence derived from alignment at chr5:1232707..1233907+ (Nannochloropsis oceanica)
ATGCACCCAGCCACCTCCTACCACCACCATCCGCCCTCCTCCTACCTCCC
CTCTTCCGTCCACTCCTCCACCCACAACCCCTCTTCCTCCTCCTTTTCCC
CCCTGTCCGAGTCCAAAGATCTCCTCCATTCCTACTACCTGTCCCACCAG
CCCAATGCCCTCGACCCTCGTTTCCTGAATCCCGCCCTCCCCCCCGCCCT
CATCCCATGCTGCTGCCCCCTCTGCTTACGCGTGCGCGCCTCCCCTTCGC
TCTTCCTTGCCCCCGATCGCTCACATCAACTCTTGGTCATCATGCAAGGC
CCACCGGGATCGGGCAAGACGACACTGGCCCATCAAATAGTCAAGAGAGT
GCAGGCCCCGCCGGGCGGCATGGTGATATGCTCCACCGACACCTACTCCC
TGACAAGGGATGGGAGGTACATATGGAATCCGGCCACGCTCGAGGAGAAT
CATGGGAAGAATCTAGAGCGCGCCAAGGCCTTTCTGGACGAAGGACGAAG
CGTCATTGTCGACAACACCAACATCCAAGCATGGCAGCCGAGGGAATACG
TCCGTCACGCCATCCGCCTGGGGGTCCAAGTCGAGTTTGTGCGGGCCTCG
GGGAAATTTAATAACGTCCACGGAGTGCCGTTGGAAAAAGTGGAGAAAAT
GAGGCAAACCATGGAGGTACTCACGATGGAGAGCGTGTTAAACTCATTGG
CACCAGCAGAAAGGAGAGGGCTGCGAGGGGAGGGAGGGAGAGAGGAAATG
AGGGAGGCAGGGCGGATGGCGGCGATGCAAGGACCGTTATTTTCCCTCCC
GGGAGGGGGGAGGGGAAGAGGGGTTGGCGGAGGAAGGGGGAGAGGGAGGG
GGGACACACGGGAGGAGATGCTGGAACGATCATTGGCAAGGATGCAGATC
GGGAGGTGA
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Synonyms
Publications