NO05G04730, NO05G04730 (gene) Nannochloropsis oceanica

Overview
NameNO05G04730
Unique NameNO05G04730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length763
Alignment locationchr5:1231253..1232015 +

Link to JBrowse

Properties
Property NameValue
DescriptionCytochrome c6
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1231253..1232015 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0009055electron transfer activity
GO:0020037heme binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR036909Cyt_c-like_dom_sf
IPR009056Cyt_c-like_dom
Homology
[Close]
BLAST of NO05G04730 vs. NCBI_GenBank
Match: WP_106239448.1 (cytochrome C6 [Pleurocapsa sp. CCALA 161] >PSB08349.1 cytochrome C6 [Pleurocapsa sp. CCALA 161])

HSP 1 Score: 83.2 bits (204), Expect = 9.500e-13
Identity = 44/94 (46.81%), Postives = 58/94 (61.70%), Query Frame = 0 
Query:   93 GVKLFENNCASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKYGSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGWK 187
            G  +FE NCA CHV G NI+   RGK LK +AL KNKV ++ AI S++  GKG+M  YG            KL+ +++  V+ YVL+QAK GWK
Sbjct:   39 GAAVFEANCAGCHVNGSNIV--RRGKNLKSKALHKNKVDTQEAIASLVTNGKGIMSAYGD-----------KLTPEQIADVSAYVLQQAKQGWK 119
[Close]
BLAST of NO05G04730 vs. NCBI_GenBank
Match: WP_099238400.1 (cytochrome C6 [Synechococcus sp. BDU 130192])

HSP 1 Score: 82.8 bits (203), Expect = 1.200e-12
Identity = 48/115 (41.74%), Postives = 69/115 (60.00%), Query Frame = 0 
Query:   73 LALTLLPSTLASPA-GAFDAKGVKLFENNCASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKYGSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGWK 187
            + + LL   LA+PA GA   +G ++FE +CA CH+ GGNI+   RGK LK+ A+ KN   + AAI +++ QGKG M  YG            KLS +E+  V+ YVL+Q++  WK
Sbjct:   13 MIVLLLVPLLATPAFGADLDQGAQIFEAHCAGCHLNGGNIV--RRGKNLKKRAMAKNGYTNLAAIANLVTQGKGNMSAYGD-----------KLSPEEIQAVSQYVLQQSQTDWK 114
[Close]
BLAST of NO05G04730 vs. NCBI_GenBank
Match: WP_106175732.1 (cytochrome C6 [filamentous cyanobacterium CCP2] >PSB06959.1 cytochrome C6 [filamentous cyanobacterium CCP2])

HSP 1 Score: 82.8 bits (203), Expect = 1.200e-12
Identity = 51/120 (42.50%), Postives = 69/120 (57.50%), Query Frame = 0 
Query:   67 LRAASFLALTLLPSTLASPAGAFD-AKGVKLFENNCASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKYGSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGW 186
            L A  FL  TL+P     PA A D A G K+F  NCA+CHVGGGN++  A  KTLK+EAL + ++AS  AI + +  GK  MP +             +L+  ++  VA YVL+QA+ GW
Sbjct:    4 LVAIVFLTFTLIPLGWNQPAIAADLANGAKVFSANCAACHVGGGNLVNAA--KTLKKEALEQYQMASIDAITTQVTNGKAAMPAF-----------KGRLTSAQIADVAAYVLDQAEKGW 110
[Close]
BLAST of NO05G04730 vs. NCBI_GenBank
Match: WP_030006884.1 (cytochrome c6 [Synechococcus sp. NKBG042902])

HSP 1 Score: 82.4 bits (202), Expect = 1.600e-12
Identity = 48/115 (41.74%), Postives = 68/115 (59.13%), Query Frame = 0 
Query:   73 LALTLLPSTLASPA-GAFDAKGVKLFENNCASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKYGSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGWK 187
            + + LL   LA+PA GA   +G ++FE +CA CH+ GGNI+   RGK LK+ A+ KN   S  AI +++ QGKG M  YG            KLS +E+  V+ YVL+Q++  WK
Sbjct:   13 MIVLLLVPLLATPAFGADLDQGAQIFEAHCAGCHLNGGNIV--RRGKNLKKRAMAKNGYTSVEAIANLITQGKGNMSAYGD-----------KLSSEEIQAVSQYVLQQSQTDWK 114
[Close]
BLAST of NO05G04730 vs. NCBI_GenBank
Match: BBC22284.1 (cytochrome c, class I [Pseudanabaena sp. ABRG5-3])

HSP 1 Score: 82.4 bits (202), Expect = 1.600e-12
Identity = 50/114 (43.86%), Postives = 65/114 (57.02%), Query Frame = 0 
Query:   73 LALTLLPS-TLASPAGAFDAKGVKLFENNCASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKYGSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGW 186
            +ALT+L S T + PA A  + G K+F NNCA CH GG N +     KTLK +AL K    +  AI   +  GKG MP +G            KLS +E+ +VA+YVLEQA+ GW
Sbjct:   10 IALTMLVSLTFSQPAFAEVSAGAKIFNNNCAQCHAGGRNNV--VAAKTLKADALEKYGKNTVEAITLQVTNGKGAMPAFGK-----------KLSAEEINLVANYVLEQAQNGW 110
[Close]
BLAST of NO05G04730 vs. NCBI_GenBank
Match: WP_012307987.1 (MULTISPECIES: cytochrome c6 [Synechococcus] >AAN03578.1 putative cytochrome c6-2 [Synechococcus sp. PCC 7002] >ACB00369.1 cytochrome c6 [Synechococcus sp. PCC 7002] >SMH48866.1 cytochrome c6 [Synechococcus sp. OG1] >SMQ81421.1 cytochrome c6 [Synechococcus sp. 7002])

HSP 1 Score: 82.0 bits (201), Expect = 2.100e-12
Identity = 48/115 (41.74%), Postives = 68/115 (59.13%), Query Frame = 0 
Query:   73 LALTLLPSTLASPA-GAFDAKGVKLFENNCASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKYGSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGWK 187
            + + LL   LA+PA GA   +G ++FE +CA CH+ GGNI+   RGK LK+ A+ KN   S  AI +++ QGKG M  YG            KLS +E+  V+ YVL+Q++  WK
Sbjct:   13 MIVLLLVPLLATPAFGADLDQGAQIFEAHCAGCHLNGGNIV--RRGKNLKKRAMAKNGYTSVEAIANLVTQGKGNMSAYGD-----------KLSSEEIQAVSQYVLQQSQTDWK 114
[Close]
BLAST of NO05G04730 vs. NCBI_GenBank
Match: WP_016874134.1 (hypothetical protein [Chlorogloeopsis fritschii])

HSP 1 Score: 82.0 bits (201), Expect = 2.100e-12
Identity = 52/119 (43.70%), Postives = 68/119 (57.14%), Query Frame = 0 
Query:   72 FLALTLLPSTLASPA-GAFDAKGVKLFENNCASCHVGGGNIIGYARGKTLKEEALVK----NKVASRAAIVSMLQQGKGVMPKYGSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGW 186
            FLA+ L       P   A  +K  K+F +NCASCH+GGGNI+     KTLK+EAL K     ++ S AAIV  +Q GKG MP + S           KL+EQE+  VA YV ++A+ GW
Sbjct:   26 FLAIALFSFIFIDPVLAAETSKAAKIFNSNCASCHIGGGNIL--ISEKTLKKEALQKYLENYELNSIAAIVHQVQNGKGAMPAFKS-----------KLNEQEINEVAAYVFQKAEQGW 131
[Close]
BLAST of NO05G04730 vs. NCBI_GenBank
Match: AMB37186.1 (cytochrome c [Pyropia haitanensis])

HSP 1 Score: 82.0 bits (201), Expect = 2.100e-12
Identity = 57/150 (38.00%), Postives = 81/150 (54.00%), Query Frame = 0 
Query:   37 QPGPQPAVTRTALSATPSSSTDQTSVHGNWLRAASFLALTLLPSTLASPAGAFDAKGVKLFENNCASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKYGSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGWK 187
            Q G   A  R    AT  ++  + S     L  A  +A+ +L +  AS A   D  G  +FE +CA+CH GGGNIIG++RGKTLK  AL K    S  A+  +++ GKGVMP Y        DV   +LS+ ++  V+ +V+  A+ GWK
Sbjct:   29 QKGVATATRRAVPVATMPAAIGKASAGTCSLLLA--IAVGVLSAIPASAAALDD--GQAIFEKSCAACHAGGGNIIGFSRGKTLKASALAKYGYNSPEAVAGLVRSGKGVMPGY--------DV--GQLSDADVSAVSKFVISAAERGWK 164
[Close]
BLAST of NO05G04730 vs. NCBI_GenBank
Match: WP_065711235.1 (cytochrome C6 [Synechococcus sp. PCC 7117] >ANV88126.1 cytochrome C6 [Synechococcus sp. PCC 7117])

HSP 1 Score: 82.0 bits (201), Expect = 2.100e-12
Identity = 48/115 (41.74%), Postives = 68/115 (59.13%), Query Frame = 0 
Query:   73 LALTLLPSTLASPA-GAFDAKGVKLFENNCASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKYGSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGWK 187
            + + LL   LA+PA GA   +G ++FE +CA CH+ GGNI+   RGK LK+ A+ KN   S  AI +++ QGKG M  YG            KLS +E+  V+ YVL+Q++  WK
Sbjct:   13 MIVLLLVPLLATPAFGADLEQGAQIFEAHCAGCHLNGGNIV--RRGKNLKKRAMAKNGYTSVEAIANLVTQGKGNMSAYGD-----------KLSPEEIQAVSQYVLQQSQTDWK 114
[Close]
BLAST of NO05G04730 vs. NCBI_GenBank
Match: WP_073073404.1 (cytochrome C6 [Phormidesmis priestleyi] >PSB18118.1 cytochrome C6 [Phormidesmis priestleyi ULC007])

HSP 1 Score: 82.0 bits (201), Expect = 2.100e-12
Identity = 46/113 (40.71%), Postives = 65/113 (57.52%), Query Frame = 0 
Query:   73 LALTLLPSTLASPAGAFDAKGVKLFENNCASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKYGSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGW 186
            LA+T+L  T + PA A    G ++F  NC++CH+GG N+I     KTL++EAL K  + S AAI + +  GK  MP +G            +L E E+  VA+YVL QA+ GW
Sbjct:    9 LAITILTFTFSHPALAAKPDGQQIFNANCSACHIGGNNVI--IANKTLRKEALEKYGMKSLAAIKTQVTHGKNAMPAFG-----------GRLQEDEIEAVANYVLNQAEKGW 108
The following BLAST results are available for this feature:
BLAST of NO05G04730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_106239448.19.500e-1346.81cytochrome C6 [Pleurocapsa sp. CCALA 161] >PSB0834... [more]
WP_099238400.11.200e-1241.74cytochrome C6 [Synechococcus sp. BDU 130192][more]
WP_106175732.11.200e-1242.50cytochrome C6 [filamentous cyanobacterium CCP2] >P... [more]
WP_030006884.11.600e-1241.74cytochrome c6 [Synechococcus sp. NKBG042902][more]
BBC22284.11.600e-1243.86cytochrome c, class I [Pseudanabaena sp. ABRG5-3][more]
WP_012307987.12.100e-1241.74MULTISPECIES: cytochrome c6 [Synechococcus] >AAN03... [more]
WP_016874134.12.100e-1243.70hypothetical protein [Chlorogloeopsis fritschii][more]
AMB37186.12.100e-1238.00cytochrome c [Pyropia haitanensis][more]
WP_065711235.12.100e-1241.74cytochrome C6 [Synechococcus sp. PCC 7117] >ANV881... [more]
WP_073073404.12.100e-1240.71cytochrome C6 [Phormidesmis priestleyi] >PSB18118.... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003377NSK003377Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04730.1NO05G04730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100008g137gene2636Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04730.1NO05G04730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04730 ID=NO05G04730|Name=NO05G04730|organism=Nannochloropsis oceanica|type=gene|length=763bp
ATGCTCCCCACCACACGCCGCTTCTCCTGCACTATCTCCCTCCTCTTTGT
GCTGCTCTGTATCAGCACCACGAGCAGCACGGCCTTCTTCCTCTCCTCCT
CCACTCCTCAGCCTGGGCCCCAACCCGCCGTAACCCGCACCGCGCTGTCC
GCCACGCCATCCTCCTCCACCGACCAAACCTCAGTCCACGGCAACTGGCT
TCGTGCCGCCTCCTTCCTTGCCCTCACCCTCCTTCCAAGCACTTTGGCTA
GTCCCGCGGGTGCCTTTGATGCCAAGGGCGTTAAGCTCTTTGAGAACAAC
TGCGCAAGTTGCCACGTGGGGGGAGGTAATATTATCGGgtaggtgcttgg
gaggaaggaggaacgcggaaagtgagagatggatggataaatggtttggt
agggacgtatggtgtctccgactttttctgcgtcggacctctatatctat
tacatattgtgggcatgcatcccgtttattcttgaccctcttacaccctt
ccttctcctccttccctccctccctccctcccttcctcagATACGCCCGC
GGGAAGACTTTGAAAGAAGAAGCCCTGGTCAAAAATAAAGTCGCCAGCCG
GGCCGCCATTGTCTCCATGCTACAACAAGGCAAAGGTGTTATGCCTAAGT
ACGGGAGCTACACACGCAAGAACGGTGACGTTGTTCCGGCTAAATTGTCG
GAGCAGGAGATGGGGATTGTGGCTGATTATGTGTTAGAGCAGGCTAAGGC
CGGGTGGAAGTAG
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protein sequence of NO05G04730.1

>NO05G04730.1-protein ID=NO05G04730.1-protein|Name=NO05G04730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MLPTTRRFSCTISLLFVLLCISTTSSTAFFLSSSTPQPGPQPAVTRTALS
ATPSSSTDQTSVHGNWLRAASFLALTLLPSTLASPAGAFDAKGVKLFENN
CASCHVGGGNIIGYARGKTLKEEALVKNKVASRAAIVSMLQQGKGVMPKY
GSYTRKNGDVVPAKLSEQEMGIVADYVLEQAKAGWK*
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Synonyms
Publications