NO05G04580, NO05G04580 (gene) Nannochloropsis oceanica

Overview
NameNO05G04580
Unique NameNO05G04580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5914
Alignment locationchr5:1187179..1193092 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1187179..1193092 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO05G04580 vs. NCBI_GenBank
Match: EWM27951.1 (hypothetical protein Naga_100008g115 [Nannochloropsis gaditana])

HSP 1 Score: 108.2 bits (269), Expect = 2.700e-19
Identity = 66/103 (64.08%), Postives = 71/103 (68.93%), Query Frame = 0
Query:   34 LQCATELENQISTLLREREGLQNQLRRAQDEASKAKSMVAGLRRSQXXXXXXXXXXXXXXXXXXXXXXALLLTLEKEVLTKKDEVRALLREIEVREQNALRLE 137
            LQCATELE+QISTLLRERE LQ +L+RAQDE  +AK  +A LRRSQ                      ALLLTLEKEVL KKDEVRALLREIE REQ ALRLE
Sbjct:   36 LQCATELESQISTLLRERETLQVKLQRAQDETKRAKGTIASLRRSQMVASTSSFASSGASGIGGSQREALLLTLEKEVLAKKDEVRALLREIEGREQEALRLE 138          
The following BLAST results are available for this feature:
BLAST of NO05G04580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27951.12.700e-1964.08hypothetical protein Naga_100008g115 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003398NSK003398Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04580.1NO05G04580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629506gene_3274Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g115gene2620Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04580.1NO05G04580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04580 ID=NO05G04580|Name=NO05G04580|organism=Nannochloropsis oceanica|type=gene|length=5914bp
ACAGGAACTGGTGCCCGCAGGGGCTAGTGCGCTGCGTTCCAGGTTTTTAC
GCACTCGTCGTCTTTCCTCCTCCAGCGAGCCGCAGCGAAACCCGACTCCC
CCATCATCCTCAATTCGCAAATGATGTCGCCCGCTCCCATGCCCATAGCT
CCACCACCCCCACCACGCTCCTCACAGTCAATGGACGCCGCGGCGTTGGC
CGCGCGGGAGGAACTGCTACTCCAATGTGCCACAGAGCTTGAAAATCAAA
TTTCGACCTTGCTGCGCGAGCGGGAAGGCCTGCAGAATCAGCTTCGACGC
GCCCAAGACGAGGCCAGTAAAGCCAAGTCCATGGTCGCTGGCTTAAGGAG
GAGCCAAATGGCGGCGTCCACATCGTCGTTTGGTTCGAGCAGTGCCAGCA
GCGTGGGGGGTAGCCAACGGGAAGCTTTGTTGTTGACCTTGGAAAAGGAA
GTGCTTACCAAGAAGGATGAGGTGAGGGCGTTGCTCCGCGAGATCGAAGT
ACGAGAGCAGAATGCCTTAAGGCTGGAACACGGAGCCAAGGTGAGGGAAG
AGAGGGTGGAAGGAATGTTACAACACGCGCAAGAAAAAGTGGGAAGCTTG
CGGGAGAAAGAACAAGAGTTGGACGTGCGAGAGGAGCGCCTAGCCCGCAA
GCAAGCTGATTTGGAAATTCGCGTTGGGGATACCCGAGCAAGAGAGGAAG
CGGCTACCATTCAGACAGGCGAGCTGGAGGCAAGGAGTACAATTGTGAGG
GAAAGGGAGGAGGAGTTGAGGGAACGGGAAGGGAAAGTGGAGGAGGAGGA
GGCACGGTTGGCGGCGAAGGAGAGGGAATTCGAGCAGATGGATTTTATAC
TTGAGGGACTGAAGAAGGAAAGGTTGGAGGTGGATGAGCGGGTTAGGGAA
ATGACGAAAAAGGAGGAGGCGCTGCAAGCGGAGCAGGGGGAATTGCTTGA
GAGAAGGAGGGAATTGAACGAATGGGAGGGGAGGGTGAGGGGGAGGGAGG
GGGAGATGGAGGAAGCGGAGAGGGAAATGGTGGAATCGAGGAGGGAGAGG
GCCAGGAGGGAGGAGGAGGCTGCTTCGATGCTGGTTCAGGCGAAAGAGGC
GGTTTTGCAGCGGGAGAGGGAGGCTCAGGTGGTGGTGGCGGAGGCGGAGA
GGAGGGTGAATGTCCTGGAGGGAAGGAGGGAGAGCTTGATGCGAGAAGTG
GCGGGATTGGAGGAGGAGGAGGCGAAAGGACGACGGGCGATGGAGGAGAG
GTTGAGGGAGGGAGAGCAAGCCTGGGAGAGTGTACAGGGGGATGTGCAGG
TGCTACGGACGGAGGTGGAGGAGAAGAGTAGGAAGCTTGCGGAGATGAAG
TCGGAAATGAGAGAGATGGAGGGGAGGGCGGGAAGGGCGGAGAGGCAGGT
GCATGAGAGACGACGGGAATTGAGGGAGTTGGATTCGAAGCTGGAGAGGG
CTAGGGGAGAAATGGAAGGGGTGGCTCTGCAGACGCGGGGCTTGCATCGG
GAGATCGAGAAGGAGAAGGAGGTGTTTGAGGAGTACGTCGGAGAGATGAG
TGAGGAGGTGGAGAAGATGAAGAGGGAGGCCTTGGAAGAAGTCAGGGTGC
AGGGGGAAGCAGTAGAGGCAGAGGCGAAGAAGTGGAAGGAGGAGTGGAAG
GTGCAGAGGGCTCTGCTGGAGCAGCAGCGGAAGGAGCTTGAGGAGAAAAG
AGAGGAGGTGGAGGGGAGGAGGAGGATGGTGGAGGAAGGATTGCTGGCCG
ATAAGCGGCGTTTGGGGAAGGAGAGGGCGGCGCTGGAGAAGGAGGCGGAG
GGAGTGAGGATGATGAAAAGAGAGTGGGAGATAGAGGTGGCGGGAATCAG
AAGGACGCTGGCGGAGGAGGTGGAGGCTTGGGAGGAGAGGAGAAGGGAGG
AAGAGCGTGCGTTGGCGGCCAGGAAGGAGGAGGAGGAGAGGGTGTTGGGG
GCGTTGAGGAGGGAGGTGGAGGGGGCGGCAAGAGGGCAGGACCTACGGTT
GAGAGAAAAAGAGGGGAGGCTGCGGGAGAAGGTGGAGGAGCAACAGCGGG
TGCAGTCGGCGCTGGAGAAGCTGGAGGGGGACTTAGAGAGGGAGCGAAAA
GCTTTGGAGGGAGGGAGGGAGGGAGTGAGGGCGGAGAAGGAGGGGCTGCA
GAGGCTGGCCCGCGAGCTGGAAAGAGCGGAGGCGGCACTTGAGAAGGAGA
GGACGGAGATGCTGCTGGGCTTTAATGAGGTGAAGGAGGAGGTGAGTGTC
ACGGCGGCAGCCAACGCGGAGACTACCCGGAGTTTGGCGAAGCAACGGAA
GGAGATGGAGGATTGGAAGGAGGGCTTAGCCAAGCGTGAGGCGGCGGTGG
AACGCCTCGAGGGGGAGTTGAAGAGGGAGCGGGCGACGGTGCTAGAGGGA
ATGGAGGCCGTGAAGGCGGCTAAGAGGGAGGTGGAGGAGGAGAAGGAGGT
GTGTGGGCAGGACCGGGTGTTGCTTGAGGCGAAGAGGGTGGAGGCCGAAG
CCAAGCGACTGCGGGCCGAGGAGAGGTTGGATTGGGCGGAGCGACAGGTG
GGGGAGGCGGAGAGGAAGGTGAAGGAGGCAATGAAGAAAGAGAGGGAGGT
AAGGGAGCTGGTGGAGAAGTATGAGGATTTTTCGAGGGAGTTGGAGGAGG
GACGGAGGGAGGCGAGGGAGGGGAGGAGGAAAGTGGAGGAATATAAATGC
GCCCTGGAGGAAGCAGAGAAACGGGCTCTGCAGCTGCAAGGGGAGGGAGC
TAGATGGAAGGAGCGGTTGACGACTATGGAGGTGATCTTGGAGGAGAGGC
AGAAGGCGCTTGACGAGGCTCTGAAAAGGGAGGGGGAGGCGAGAAGGAGG
GCAAGGACGATAGAGGAAAGCGAGCGGGTGGCATTGGAAGAGGCGAGGGA
GGAAGTAGAACGGAGAGAGGAGCAGGTGCGGGCACGTGCGTTGGAGCTGG
AATGCCTCGCGGATAATGTGGCGCGAAGGGACGCCATTCTTTTGAGCCTC
GAGGAGGGCTTTTTCCAGCAGCAGGCAGGGAGGGAGGGAGCGAGGGAGGT
GAGACTACGGTTGGATCAGGCGGGGAATCTGTCGAGGGCCTTTGAGAAGG
AGAGATTGGAGGTGGAGGAGAGGAGGGGGAAGCTCGTGCAAGCGAAAGTG
GTGCTGGACAAAAAACGGTTGAAGTTAGAAGGGGAGCGGGTAGTGCTCGA
GGGGAGGGCGACGCGATTACTGGAGCAGGAGGAGGAGGTGAGAGCGGAAG
CGATGCGGGTGCAACGGTGGAAGGAGGCACTGGAAGAGGAGGAAGAGGGA
TTGGAGAGGAGAAGGAAGGAGTTGGAGGGATGGAGGGAGGAGGTGAAGGG
GGAGATGGAGCGGATGAGGGGGGAGATCGGGGAGATGTATCGGAAGGCGA
AGAAAAAGGAGGAAGACACGGAGGAGTTGAGAAGACAGTTGATTGCGTCA
GCAGAGGCAGCAGCAGGAAGGGTGAGGGAGCTGGAGGAGGCGAGGGTATG
GATCGAGGAGGAGCGAGTGAAGCTTCAGGCGAAGATCAAGCATGTGGCGC
TTGTGGAGAAGACGGTGTTGCAGCAGATGCAGGAGGTGGAGGCGGCGTGG
GAACGGGCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGC
AGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAG
GAGCAGGAGCAGGAGCAGGAGGAGGGGGAGAAGGAGGAGGAGGAGGAATG
CGAAGAGGAGTTGGAGAAGGAGCGAGAGGAACAGCGAGGACGAGGGGGAG
GTGGAGGAAGAGGGGAGGGGACAGGAGAGGAAAAGAATATCACTCCCAGG
ATGCGAGCGGCGGCGGCCCTTGTCGCCCCAGGGGCCGAAGTGGCAGCGGA
GGAAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAA
CAGCAGCAACAGCGGCAACAGCGGCAACAGCAGCAACAGCAGCAACAGCG
GCAACAGCAGCAACTCCGGCTGCTTCGGCAGCTGCAGTGACAACGGGTGG
GATAGAACCTCCATCCGCCACTGGCACTGCTCTTGCCGCTGCCGCTGCGG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTCCTCCTCATCCTCCA
TCCCCTCCTTCTCCCCGTTTTCCTCTTCCTCGTTCTTCTACTCCCCATAC
ACAACAATCCTACCTCGCATTCCCCCCTCCTTCCTCCCTCGCCCCTGCAG
TCGATGCTACGACGGCTCCTCCCCCTCTCTCCTCCCCCTCCTTTTCCTGC
CTCCAATCAGAGGAGGGAGGTAGAGAGGAAGGGATAGAGGAGGGGTTTGG
TGATGTGACTTTAGACTCGATTCGAAGACGTTTTTCTGTTGCTATGGACA
GTCTGAATACGTCAGTGCACGAAAGAGATGAGATGGTGTTTGGGATCGGG
AGGAAGGAAGGGAGGGAGGGGAGGAGGGAGGGAGGGGAGGAGGGGGGAAG
TCTGGGGTTACTGGAAGAGGACTTGTCGTCGGTGGAGGGGGGGAAGGAGG
AGGAGGAGGAGGAAGGAGCGACAGGGAAGGAGGTGTTTTTACCTACAACT
TCGCCGAAGAAGAAGCGGAGCAGGCAATCGTCTGAAACGACTGGTGACAC
CGTGGCAGGAGTTGGAGGAGGAGGAGGAGGAGGAGGAGAGGGAAGAGGGG
AAAAAGACAATATGGAAGAAGAAGAAGAAGAAGAAGGAAGAAAAGAAGGA
GGAAGGGATAGAGAAGAAAGAGCAAGAATGACAGCACCAGCAAAAGGTGA
GGAAGAAGTAGAGACGAGCTTCCATGCGCTTGCCTCGCCCTCTCCCCCTT
CAACAATTCCTCAGAACCATTGTGGTGACACCCCCATGTCGGTTTCATCT
TCCTCCTCTCCCTCTTCCTCCTCCGCTTCCTCGTCCTTGCTCTTTGCAGG
GGTAAAGGGTGAGGAGGCAGAGGAGGGGGAGGCAGAGCCAGAGGGGGATG
AAGAGCAGGATCTCAGCGGCACTAACGAGGAGGAAAATGACAAGTACCTC
GATTTTAAAGCAGAGGGTGAGGGAGGAGGCGGAGCAGGCAGAGGAGAGGG
ACAAGGAGGAGGAAGAAGAGGTGAGGGAGATGAGTTTCATTTTCACAATT
TTTCATGTAGAGAGGAGGAGGCGGAGGAGGGAGGGGGGTGGGAGCAGGGG
TTGGAGCAGAGGAGGGTGGCGCTTGGCACAGAGCTGCAGCGATTGTGTAT
TCAGATGGCATTATTGGAGGAAGATTCGTCGTCCGAGGAGGAGGAGGAGG
GAGAGGAGGGTAGGAAGGGCATCAATGAAGAAGGGGTAAGAGGGAAGAAG
GGAAGAGGAGGAGGAGGAGGAGATGATGATGTGGTGCATATGAAGGCTAC
GCTCCAGCAGAAGATTGAGGCAACGCGCGCTGCCTTGCGGGCGGTTGATG
AGTGTATTTCGGCAGGGGACATTGTGTGAATGTGAGTATTTGTTGTAATT
AAAAAAGTTAAGTCGGTGGTGATGGTGAAAGTACATGTGCAATCTGTGTG
TGTATGGGTGAGGATGTGTGTGTGGTACGTGTAACGTGGGGGGAGGAGGA
AGGAGGGAGGGGGTAAAAAGAAATTCATCCCCGCCCCTACTTTTGTAAAA
TCGACGAATGTACGCTTTATGCATCAAAACCACAAGTATAAAGCGACCTA
CAGACCGCAAGCAAGCAAAAAAGAAGAACTAAAGACCACAAGAAAGAGCC
AAGACCCCCCCTGACATCTGACCCTGTAATGAAACAAAGGGCACAAGAAA
GTTAAAATTGAAAGAGGGCAACGTTTGAACGTATTTTATTTCTAGGAAAT
TATCAGGCGACAGC
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protein sequence of NO05G04580.1

>NO05G04580.1-protein ID=NO05G04580.1-protein|Name=NO05G04580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1803bp
MMSPAPMPIAPPPPPRSSQSMDAAALAAREELLLQCATELENQISTLLRE
REGLQNQLRRAQDEASKAKSMVAGLRRSQMAASTSSFGSSSASSVGGSQR
EALLLTLEKEVLTKKDEVRALLREIEVREQNALRLEHGAKVREERVEGML
QHAQEKVGSLREKEQELDVREERLARKQADLEIRVGDTRAREEAATIQTG
ELEARSTIVREREEELREREGKVEEEEARLAAKEREFEQMDFILEGLKKE
RLEVDERVREMTKKEEALQAEQGELLERRRELNEWEGRVRGREGEMEEAE
REMVESRRERARREEEAASMLVQAKEAVLQREREAQVVVAEAERRVNVLE
GRRESLMREVAGLEEEEAKGRRAMEERLREGEQAWESVQGDVQVLRTEVE
EKSRKLAEMKSEMREMEGRAGRAERQVHERRRELRELDSKLERARGEMEG
VALQTRGLHREIEKEKEVFEEYVGEMSEEVEKMKREALEEVRVQGEAVEA
EAKKWKEEWKVQRALLEQQRKELEEKREEVEGRRRMVEEGLLADKRRLGK
ERAALEKEAEGVRMMKREWEIEVAGIRRTLAEEVEAWEERRREEERALAA
RKEEEERVLGALRREVEGAARGQDLRLREKEGRLREKVEEQQRVQSALEK
LEGDLERERKALEGGREGVRAEKEGLQRLARELERAEAALEKERTEMLLG
FNEVKEEVSVTAAANAETTRSLAKQRKEMEDWKEGLAKREAAVERLEGEL
KRERATVLEGMEAVKAAKREVEEEKEVCGQDRVLLEAKRVEAEAKRLRAE
ERLDWAERQVGEAERKVKEAMKKEREVRELVEKYEDFSRELEEGRREARE
GRRKVEEYKCALEEAEKRALQLQGEGARWKERLTTMEVILEERQKALDEA
LKREGEARRRARTIEESERVALEEAREEVERREEQVRARALELECLADNV
ARRDAILLSLEEGFFQQQAGREGAREVRLRLDQAGNLSRAFEKERLEVEE
RRGKLVQAKVVLDKKRLKLEGERVVLEGRATRLLEQEEEVRAEAMRVQRW
KEALEEEEEGLERRRKELEGWREEVKGEMERMRGEIGEMYRKAKKKEEDT
EELRRQLIASAEAAAGRVRELEEARVWIEEERVKLQAKIKHVALVEKTVL
QQMQEVEAAWERAQQQQQQQQQQQQQQQEQEQEQEQEQEQEQEQEQEQEQ
EQEQEQEQEQEQEQEQEEGEKEEEEECEEELEKEREEQRGRGGGGGRGEG
TGEEKNITPRMRAAAALVAPGAEVAAEEAAATAATAATAATAATAATAAT
AATAATAATAATAATPAASAAAVTTGGIEPPSATGTALAAAAAAAAAAAA
AAAASPPHPPSPPSPRFPLPRSSTPHTQQSYLAFPPPSSLAPAVDATTAP
PPLSSPSFSCLQSEEGGREEGIEEGFGDVTLDSIRRRFSVAMDSLNTSVH
ERDEMVFGIGRKEGREGRREGGEEGGSLGLLEEDLSSVEGGKEEEEEEGA
TGKEVFLPTTSPKKKRSRQSSETTGDTVAGVGGGGGGGGEGRGEKDNMEE
EEEEEGRKEGGRDREERARMTAPAKGEEEVETSFHALASPSPPSTIPQNH
CGDTPMSVSSSSSPSSSSASSSLLFAGVKGEEAEEGEAEPEGDEEQDLSG
TNEEENDKYLDFKAEGEGGGGAGRGEGQGGGRRGEGDEFHFHNFSCREEE
AEEGGGWEQGLEQRRVALGTELQRLCIQMALLEEDSSSEEEEEGEEGRKG
INEEGVRGKKGRGGGGGDDDVVHMKATLQQKIEATRAALRAVDECISAGD
IV*
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Synonyms
Publications