NO05G04490, NO05G04490 (gene) Nannochloropsis oceanica

Overview
NameNO05G04490
Unique NameNO05G04490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1421
Alignment locationchr5:1165288..1166708 +

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Properties
Property NameValue
DescriptionIntegral membrane protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1165288..1166708 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019185Integral_membrane_SYS1-rel
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO05G04490 vs. NCBI_GenBank
Match: XP_022953394.1 (protein SYS1 homolog [Cucurbita moschata])

HSP 1 Score: 120.9 bits (302), Expect = 3.300e-24
Identity = 64/142 (45.07%), Postives = 89/142 (62.68%), Query Frame = 0 
Query:    2 GAQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDVSMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPL 144
            GA  +DP LIV QI+ LQCLYYL  G ++        + +S+   F    + V +A G   + + LLS +AG+V L  ++ERAKKCLDF  TL+  H   C VY  +PS++ WWV +  GL VM+LLGE+LC + ELR+IP+
Sbjct:    4 GAVVWDPWLIVAQIVCLQCLYYLTLGILIATLVGTRVSRISLVYFFDYATITVSTATGWCVIASFLLSALAGAVYLVYLIERAKKCLDFAATLYILHLFICIVYGGWPSSMTWWVVNGTGLVVMSLLGEYLCIKRELREIPI 145
[Close]
BLAST of NO05G04490 vs. NCBI_GenBank
Match: XP_023547444.1 (protein SYS1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.9 bits (302), Expect = 3.300e-24
Identity = 64/142 (45.07%), Postives = 89/142 (62.68%), Query Frame = 0 
Query:    2 GAQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDVSMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPL 144
            GA  +DP LIV QI+ LQCLYYL  G ++        + +S+   F    + V +A G   + + LLS +AG+V L  ++ERAKKCLDF  TL+  H   C VY  +PS++ WWV +  GL VM+LLGE+LC + ELR+IP+
Sbjct:    4 GAVVWDPWLIVAQIVCLQCLYYLTLGILIATLVGTRVSRISLVYFFDYATITVSTATGWCVIASFLLSALAGAVYLIYLIERAKKCLDFAATLYILHLFICIVYGGWPSSMTWWVVNGTGLVVMSLLGEYLCIKRELREIPI 145
[Close]
BLAST of NO05G04490 vs. NCBI_GenBank
Match: XP_008775335.1 (PREDICTED: protein SYS1 homolog [Phoenix dactylifera])

HSP 1 Score: 120.6 bits (301), Expect = 4.400e-24
Identity = 64/145 (44.14%), Postives = 91/145 (62.76%), Query Frame = 0 
Query:    2 GAQAFDPKLIVYQIIALQCLYYLVEG---GILMGFNLIFGTDVSMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPL 144
            GA  +DP LIV QI+ LQCLYYL  G    IL+G  +   + +S+   F    L   +  G   +++ LLS +AG+  L  ++ERAKKCLDF  TL+  H   C +Y  +PS++ WWV ++ GL++M+LLGE LC R ELR+IP+
Sbjct:    4 GAMVWDPWLIVSQIVCLQCLYYLTLGLFMAILVGTRV---SRLSLMYFFDFSTLTASTVTGWCAIVSFLLSSLAGASYLLYLIERAKKCLDFAATLYIVHLFICIIYGGWPSSITWWVVNITGLALMSLLGEWLCIRRELREIPI 145
[Close]
BLAST of NO05G04490 vs. NCBI_GenBank
Match: XP_011659561.1 (PREDICTED: protein SYS1 homolog [Cucumis sativus] >KGN45351.1 hypothetical protein Csa_7G446680 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 4.400e-24
Identity = 63/142 (44.37%), Postives = 88/142 (61.97%), Query Frame = 0 
Query:    2 GAQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDVSMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPL 144
            GA  +DP LIV QI+ LQC YYL  G +L        + +S+   F    + V +A G   + + LLS +AG+  L  ++ERAKKCLDF  TL+ FH   C +Y  +PS++ WWV +  GL VM+LLGE+LC + ELR+IP+
Sbjct:    4 GAVVWDPWLIVAQIVCLQCFYYLTLGILLATLVGTRVSRISLVYFFDYATISVSTATGWCVIASFLLSAIAGAGYLVYLIERAKKCLDFAATLYIFHLFICIIYGGWPSSMTWWVVNGTGLVVMSLLGEYLCIKRELREIPI 145
[Close]
BLAST of NO05G04490 vs. NCBI_GenBank
Match: XP_019237223.1 (PREDICTED: protein SYS1 homolog isoform X1 [Nicotiana attenuata] >OIT22563.1 hypothetical protein A4A49_32682 [Nicotiana attenuata])

HSP 1 Score: 120.6 bits (301), Expect = 4.400e-24
Identity = 64/145 (44.14%), Postives = 92/145 (63.45%), Query Frame = 0 
Query:    2 GAQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDV---SMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPL 144
            GA  +DP LIV QI+ LQCLYYL+ G  L    ++ GT V   S+   F    +   +  G   + + LLS +AG+ +L  ++ERAKKCLDF+ TL+  H   C VY  +PS++ WW+ ++ GL+VM LLGE+LC + ELR+IP+
Sbjct:    4 GAVVWDPWLIVAQIVCLQCLYYLILGIFLA---ILVGTRVSRMSLVYFFDYAAVTASTVTGWCVIASFLLSSLAGAGILLYLIERAKKCLDFSATLYIVHLFICIVYGGWPSSITWWIVNVTGLAVMALLGEYLCIKRELREIPI 145
[Close]
BLAST of NO05G04490 vs. NCBI_GenBank
Match: XP_019237224.1 (PREDICTED: protein SYS1 homolog isoform X2 [Nicotiana attenuata])

HSP 1 Score: 120.6 bits (301), Expect = 4.400e-24
Identity = 64/145 (44.14%), Postives = 92/145 (63.45%), Query Frame = 0 
Query:    2 GAQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDV---SMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPL 144
            GA  +DP LIV QI+ LQCLYYL+ G  L    ++ GT V   S+   F    +   +  G   + + LLS +AG+ +L  ++ERAKKCLDF+ TL+  H   C VY  +PS++ WW+ ++ GL+VM LLGE+LC + ELR+IP+
Sbjct:    4 GAVVWDPWLIVAQIVCLQCLYYLILGIFLA---ILVGTRVSRMSLVYFFDYAAVTASTVTGWCVIASFLLSSLAGAGILLYLIERAKKCLDFSATLYIVHLFICIVYGGWPSSITWWIVNVTGLAVMALLGEYLCIKRELREIPI 145
[Close]
BLAST of NO05G04490 vs. NCBI_GenBank
Match: XP_019454800.1 (PREDICTED: protein SYS1 homolog [Lupinus angustifolius])

HSP 1 Score: 120.6 bits (301), Expect = 4.400e-24
Identity = 62/145 (42.76%), Postives = 91/145 (62.76%), Query Frame = 0 
Query:    2 GAQAFDPKLIVYQIIALQCLYYLVEG---GILMGFNLIFGTDVSMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPL 144
            GA  +DP LIV QI+ LQCLYY+  G    +L+G  L   + +S+   F    +   +  G   + + +LS VAG+V +  +VERAKKCLDF+ TL+  H   C +Y  +PS+L WW+ H +G++ M LLGE+LC + ELR+IP+
Sbjct:    4 GAVVWDPWLIVVQIVCLQCLYYITLGMFLSLLVGIRL---SRMSLVYFFDYVTITTSTVTGWCVIASFVLSSVAGAVYMLYLVERAKKCLDFSATLYIIHLFICILYGGWPSSLTWWIVHGIGIAAMALLGEYLCIKRELREIPI 145
[Close]
BLAST of NO05G04490 vs. NCBI_GenBank
Match: XP_020687113.1 (protein SYS1 homolog [Dendrobium catenatum] >XP_020687114.1 protein SYS1 homolog [Dendrobium catenatum])

HSP 1 Score: 120.2 bits (300), Expect = 5.700e-24
Identity = 66/145 (45.52%), Postives = 89/145 (61.38%), Query Frame = 0 
Query:    2 GAQAFDPKLIVYQIIALQCLYYLVEG---GILMGFNLIFGTDVSMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPL 144
            GA  +DP LIV QI+ LQCLYYL  G    IL+G  +   + +S+   F    L   +  G L +   LLS VAG+  +  ++ERAKKCLDF+ TL+  H   C +Y  +PS+L WW+ +L GL +M LLGE LC R ELR+IP+
Sbjct:    4 GAVVWDPWLIVSQIVCLQCLYYLTLGILLSILVGARV---SRMSLVYFFDFSTLTASTVTGWLAIAGFLLSSVAGAGYILFLIERAKKCLDFSATLYIIHLFVCIMYGGWPSSLTWWIVNLTGLVLMALLGEWLCIRRELREIPI 145
[Close]
BLAST of NO05G04490 vs. NCBI_GenBank
Match: AFK36128.1 (unknown [Lotus japonicus])

HSP 1 Score: 120.2 bits (300), Expect = 5.700e-24
Identity = 64/145 (44.14%), Postives = 89/145 (61.38%), Query Frame = 0 
Query:    2 GAQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDV---SMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPL 144
            GA  +DP LIV QI+ LQCLYY+  G   + F ++ GT V   S+   F    L   +  G   + + LL+ +AGSV +   +ERAKKCLDF+ TL+  H   C VY  +PS++ WW  ++ G +VM LLGE+LC R ELR+IP+
Sbjct:    4 GAVVWDPWLIVAQIVCLQCLYYITLG---LFFTILVGTRVSRMSLVYFFDFATLTTSTITGWCVIASFLLTSIAGSVYMLYFIERAKKCLDFSATLYTIHLFICIVYGGWPSSIAWWAVNVAGFAVMALLGEYLCIRRELREIPI 145
[Close]
BLAST of NO05G04490 vs. NCBI_GenBank
Match: OWM76469.1 (hypothetical protein CDL15_Pgr005433 [Punica granatum])

HSP 1 Score: 120.2 bits (300), Expect = 5.700e-24
Identity = 65/145 (44.83%), Postives = 91/145 (62.76%), Query Frame = 0 
Query:    2 GAQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDV---SMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPL 144
            GA  +DP LIV QI+ LQCLYYL  G   M  +L+ GT V   S+   F    + V +  G   + + +L+ + G+V +  ++ERAKKC DF+ TL+  H L C +Y  FPS++ WWV +  GL+VM LLGE+LC R ELR+IP+
Sbjct:    4 GAVVWDPWLIVAQIVTLQCLYYLTLG---MFLSLLVGTRVSRMSLVYFFDFATVSVATVTGWCVIASCMLAALVGAVFMLYLIERAKKCPDFSATLYIIHLLLCILYGGFPSSMTWWVVNGTGLAVMALLGEYLCIRRELREIPI 145
The following BLAST results are available for this feature:
BLAST of NO05G04490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_022953394.13.300e-2445.07protein SYS1 homolog [Cucurbita moschata][more]
XP_023547444.13.300e-2445.07protein SYS1 homolog [Cucurbita pepo subsp. pepo][more]
XP_008775335.14.400e-2444.14PREDICTED: protein SYS1 homolog [Phoenix dactylife... [more]
XP_011659561.14.400e-2444.37PREDICTED: protein SYS1 homolog [Cucumis sativus] ... [more]
XP_019237223.14.400e-2444.14PREDICTED: protein SYS1 homolog isoform X1 [Nicoti... [more]
XP_019237224.14.400e-2444.14PREDICTED: protein SYS1 homolog isoform X2 [Nicoti... [more]
XP_019454800.14.400e-2442.76PREDICTED: protein SYS1 homolog [Lupinus angustifo... [more]
XP_020687113.15.700e-2445.52protein SYS1 homolog [Dendrobium catenatum] >XP_02... [more]
AFK36128.15.700e-2444.14unknown [Lotus japonicus][more]
OWM76469.15.700e-2444.83hypothetical protein CDL15_Pgr005433 [Punica grana... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003408NSK003408Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04490.1NO05G04490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585124gene_3265Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g106gene2612Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04490.1NO05G04490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04490 ID=NO05G04490|Name=NO05G04490|organism=Nannochloropsis oceanica|type=gene|length=1421bp
ATGGGTGCTCAAGgtacgtttttggagaggggtgtatgcagggcaatgtt
actattcccctttgccttcccgcgttgctcatcccacccttttctacaca
cattttcacacccctttcctgccaccttccttaccgcacttccacccgtg
cctttactgcctctctcccttcccgctcttcccgaccaccccaaaccccc
actaccccacaacaacaacaacacccgtatccgcaccaccgacccatccc
ttcttgcccccccggcccgtccatccccccttcccctcgttctactccca
ccccagCCTTTGACCCCAAGCTGATAGTCTACCAGATCATCGCCCTTCAG
gtattctatttgtagctcttcatcctaccctttgcatcatccccacatgt
tttgactcattctttcctccctcgctccctcgctccctcgctcccttgct
cgattcgctctcttcgttgcgccagTGCCTGTACTATTTGGTCGAGGGGG
GAATCTTGATGGGATTTAATTTAATTTTCGGTACGGACGTGTCCATGACA
CAAATATTCACGCCCAAGGGTCTGGAAGTAGGATCGGCCGAAGGGCTTCT
GAACGTGATTGCGTTGTTACTGTCCTTTGTGGCGGGgtaagaaaggaggg
aaaaagagagggaaggatcgcgcatccaaacatgctcatccacggtttcc
atagattagctcaactattcaaattagatttatttttttcctctcccatt
tcatacggatgaaaccaacagCTCGGTGCTTTTGTGTGTGGTAGTGGAGC
GGGCGAAGAAGTGCCTCGACTTCACCGTAACGCTATTCTTTTTCCACTTT
CTCGCTTGCGGTGTGTACGAGgtaaggcgaaactggaatcgggaacttgt
agtgcatgacgactatcccccttctacgctgaaacacatgattagacatt
gtgcggtgttattaacatgtgagggcggaagggaggaaaagccgacctgc
ccataaatgaaacaccgggattctgatgttttccctaatctattctaccc
acagTCATTCCCCTCCACCCTCCTCTGGTGGGTCTGCCACCTTGTGGGCC
TCTCCGTCATGACCTTGCTTGgtacgtacaaagcttgaaacaaagcaccc
agttgttgttgtgacggccatgtttttgtgccatttgctttttctcgtgt
ttcactctgtacttactgctgatttctacgtattctcgttccatcaacca
ccaccaatagctatctccaaaattataatgcgttttctatttcattctca
taagcacccttcctccctccctcccttgcttcctccctcattctccaaag
GCGAGCACCTATGTGCCCGCAGCGAGCTCCGAGACATCCCCCTCTTCGTA
ATCGACCAAACCACAGGATGA
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protein sequence of NO05G04490.1

>NO05G04490.1-protein ID=NO05G04490.1-protein|Name=NO05G04490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MGAQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDVSMTQIFTPK
GLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFL
ACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPLFVIDQTT
G*
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Synonyms
Publications