NO05G04450, NO05G04450 (gene) Nannochloropsis oceanica

Overview
NameNO05G04450
Unique NameNO05G04450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length549
Alignment locationchr5:1155321..1155869 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1155321..1155869 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036102OsmC/Ohrsf
IPR003718OsmC/Ohr_fam
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO05G04450 vs. NCBI_GenBank
Match: WP_103037869.1 (osmotically inducible protein C [Salinivenus iranica])

HSP 1 Score: 82.4 bits (202), Expect = 1.600e-12
Identity = 49/116 (42.24%), Postives = 66/116 (56.90%), Query Frame = 0
Query:   59 TSGRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRIYSDLMIKEGKWPGK------TIEKMSVTCSEHGD-DHHVPTRIEVRVSLKSNLDEDQIKRLMAAAGKCPVKRML 168
            T+GRHTL SD     GG + GP P + +L+ALGSCT +T+R+Y+D       WP +      T EK+     +H D D     RI+  V L+ +L EDQ +RL+  A KCPV R L
Sbjct:  278 TAGRHTLVSDEPASVGGDDAGPTPYDLLLSALGSCTGMTLRMYAD----RKDWPLEEVTVRLTHEKIHAEDCDHCDTDEGKVDRIDREVELEGDLSEDQRRRLLEIANKCPVHRTL 389          
BLAST of NO05G04450 vs. NCBI_GenBank
Match: WP_108519836.1 (osmotically inducible protein C [Bradyrhizobium algeriense])

HSP 1 Score: 82.4 bits (202), Expect = 1.600e-12
Identity = 52/152 (34.21%), Postives = 78/152 (51.32%), Query Frame = 0
Query:   24 MRPVVAPCRGFAKGSPTHVVMHEMREADSLHAVQGTSGRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRIYSD---LMIKEGKWPGKTIEKMSVTCSEHGDDHHVPTRIEVRVSLKSNLDEDQIKRLMAAAGKCPVKRMLLGGIK 173
            + P  A     A  +P  VV+ E R +     V  T+G H + +D    AGG + GPGP ++VL  LG+CT +TMR+Y+D   L +       K  +  +  C+E      +  +I+  +S++  LD DQ KRLM  A KCPV R L   ++
Sbjct:  251 IEPAAAQPAAAASEAPRKVVVRETRNSKFQQTV--TTGPHQMLADEPVAAGGQDSGPGPYDFVLAGLGACTSMTMRMYADRKSLPLDRVTVTLKHSKVHAEDCAECETREGMLDQIDRVISIEGALDTDQRKRLMEIADKCPVHRTLTSEVR 400          
BLAST of NO05G04450 vs. NCBI_GenBank
Match: WP_079587966.1 (OsmC family protein [Bradyrhizobium lablabi] >SHL95521.1 putative redox protein [Bradyrhizobium lablabi])

HSP 1 Score: 81.6 bits (200), Expect = 2.700e-12
Identity = 59/182 (32.42%), Postives = 91/182 (50.00%), Query Frame = 0
Query:    2 LLAATTKSAMQRQIWPLMRSPLMRPV-VAPCRGFAKGSPTHVVMHEMREADSLHAVQGTSGRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRIYSDLMIKEGKWPGKTIEKMSVT----------CSEHGDDHHVPTRIEVRVSLKSNLDEDQIKRLMAAAGKCPVKRMLLGGIK 173
            LL+    SA    +        + PV VAP     +G P +VV+ E R +     V  TSG H + +D    AGG + GPGP +++L+ LG+CT +TMR+Y+D            +E+++VT          C+E      +  +I+  ++++  LD DQ KRLM  A KCPV R L   ++
Sbjct:  229 LLSDKRDSAYVADVVTAWAERYIEPVAVAPVAAATEG-PRNVVVRETRNSKFQQTV--TSGPHQMLADEPVAAGGQDTGPGPYDFLLSGLGACTSMTMRMYADR-------KSLPVERITVTLKHNKIHAEDCAECETREGMLDQIDRVIAIEGALDADQRKRLMEIADKCPVHRTLTSEVR 400          
BLAST of NO05G04450 vs. NCBI_GenBank
Match: WP_094892449.1 (OsmC family protein [Bradyrhizobium sp. 2(2017)] >OZV07961.1 osmotically inducible protein C [Bradyrhizobium sp. 2(2017)])

HSP 1 Score: 81.6 bits (200), Expect = 2.700e-12
Identity = 53/154 (34.42%), Postives = 79/154 (51.30%), Query Frame = 0
Query:   30 PCRGFAKGSPTHVVMHEMREADSLHAVQGTSGRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRIYSD---LMIKEGKWPGKTIEKMSVTCSEHGDDHHVPTRIEVRVSLKSNLDEDQIKRLMAAAGKCPVKRMLLGGIKEGITTVVD 181
            P +      P  VV+ E R++    A+  T G H L +D    AGG + GPGP +Y+L  LG+CT +TMR+Y+D   L +       K  +  +  C+E      +  +IE  +++   +D DQ K+LM  A KCPV R L   I+  +T  VD
Sbjct:  256 PAKPIDLAEPRKVVVQETRKSKFNQAI--TVGPHHLVADEPVTAGGEDAGPGPYDYLLAGLGACTSMTMRLYADRKSLPLDRVTVTLKHSKIYARDCAECETREGMLDQIERDIAIDGEMDADQRKKLMEIADKCPVHRTLTSEIRI-VTRAVD 406          
BLAST of NO05G04450 vs. NCBI_GenBank
Match: XP_024403467.1 (uncharacterized protein LOC112295769 [Physcomitrella patens] >PNR33906.1 hypothetical protein PHYPA_023722 [Physcomitrella patens])

HSP 1 Score: 81.6 bits (200), Expect = 2.700e-12
Identity = 42/121 (34.71%), Postives = 72/121 (59.50%), Query Frame = 0
Query:   59 TSGRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRIYSDLMIKEGKWPGKTIEKMSVTCSEHGD-DHH--VPTRIEVRVSLKSNLDEDQIKRLMAAAGKCPVKRMLLGGIKEGIT 177
            TSG HT   DL    G G   P PK+Y    L  C+ +T+R++++      KWP   + ++SVT  E  + D H  +P  +++ +SL+ +L + Q +RL+  + +CPVK+M+LG +++GI+
Sbjct:   60 TSGPHTFRGDLGEAWGAGGTAPEPKDYAFAGLAMCSSLTIRLFAE----RKKWP---LRRVSVTVKEVSEKDLHGTIPDGLQMTISLEGDLSDAQKERLLEISARCPVKQMMLGKMRDGIS 173          
BLAST of NO05G04450 vs. NCBI_GenBank
Match: WP_021076215.1 (OsmC family protein [Bradyrhizobium sp. MOS004] >ERF84300.1 redox protein [Bradyrhizobium sp. DFCI-1] >OYU60531.1 osmotically inducible protein C [Bradyrhizobium sp. PARBB1] >PSO24681.1 OsmC family protein [Bradyrhizobium sp. MOS004])

HSP 1 Score: 80.9 bits (198), Expect = 4.600e-12
Identity = 49/145 (33.79%), Postives = 75/145 (51.72%), Query Frame = 0
Query:   38 SPTHVVMHEMREADSLHAVQGTSGRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRIYSDLMIKEGKWPGKTIEKMSVT----------CSEHGDDHHVPTRIEVRVSLKSNLDEDQIKRLMAAAGKCPVKRMLLGGIK 173
            +P +VV+ E R       V  T+G H L +D     GG + GPGP +++LT LG+CT +TMR+Y+D            +++++VT          C E      +  +IE  + ++ NLD DQ KRLM  A KCPV + L   ++
Sbjct:  264 APRNVVVQETRNGKFQQIV--TTGPHRLTADEPVSVGGDDSGPGPYDFLLTGLGACTSMTMRMYADR-------KSLPVDRITVTLQHNKIYAKDCEECETREGMLDQIERVIRIEGNLDADQRKRLMEIADKCPVHKTLTSEVR 399          
BLAST of NO05G04450 vs. NCBI_GenBank
Match: WP_044538756.1 (OsmC family protein [Bradyrhizobium sp. LTSP885] >KJC45937.1 osmotically inducible protein C [Bradyrhizobium sp. LTSP885])

HSP 1 Score: 80.9 bits (198), Expect = 4.600e-12
Identity = 50/145 (34.48%), Postives = 76/145 (52.41%), Query Frame = 0
Query:   38 SPTHVVMHEMREADSLHAVQGTSGRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRIYSDLMIKEGKWPGKTIEKMSVT----------CSEHGDDHHVPTRIEVRVSLKSNLDEDQIKRLMAAAGKCPVKRMLLGGIK 173
            +P +VV+ E R +     V  TSG H L +D     GG + GPGP +++LTALG+CT +TMR+Y+D            +E+++VT          C E      +  +I+  + ++  LD DQ KRLM  A KCPV + L   ++
Sbjct:  265 APRNVVVQETRNSKLQQIV--TSGPHHLLADEPVSVGGQDSGPGPYDFLLTALGACTSMTMRMYADR-------KSLPVERITVTLQHNKIYAKDCEECETREGMLDQIDRVIKIEGALDADQRKRLMEIADKCPVHKTLTSEVR 400          
BLAST of NO05G04450 vs. NCBI_GenBank
Match: WP_071843667.1 (OsmC family peroxiredoxin [Hymenobacter sp. DG25A] >ALD20223.1 osmotically inducible protein C [Hymenobacter sp. DG25A])

HSP 1 Score: 80.9 bits (198), Expect = 4.600e-12
Identity = 51/151 (33.77%), Postives = 80/151 (52.98%), Query Frame = 0
Query:   39 PTHVVMHEMREADSLHAVQGTSGRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRIYSDLMIKEGKWPGKTIE------KMSVTCSEHGDD-HHVPTRIEVRVSLKSNLDEDQIKRLMAAAGKCPVKRMLLGGIKEGITTVVDKD 183
            P   V+  +R    L  V+  +GRHT + D   E GG + GP P + +L+ALG+CT IT+R+Y++    + KWP +TIE      ++     EH ++  ++   +   V L   L   Q +RL   + KCPV++ L  G    ITTV+D +
Sbjct:    4 PEFTVLVHVRATALLADVR--AGRHTFFVDEPVEVGGQDTGPTPYDMLLSALGTCTAITLRVYAN----QKKWPLETIEIRLRHQRVHEQDCEHSEEPGYMLDEVHKEVRLLGPLTATQRQRLQLVSEKCPVQKTLTSGTLRIITTVLDDE 148          
BLAST of NO05G04450 vs. NCBI_GenBank
Match: PHQ68531.1 (osmotically inducible protein OsmC [Robiginitomaculum sp.])

HSP 1 Score: 80.9 bits (198), Expect = 4.600e-12
Identity = 43/105 (40.95%), Postives = 65/105 (61.90%), Query Frame = 0
Query:   63 HTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRIYSDLMIKEGKWPGKTIEKMSVTCSEHGDDHHVPTRIEVRVSLKSNLDEDQIKRLMAAAGKCPVKRML 168
            H LY+D   + GG + GP P E+VL  LGSCT IT+R+Y++      KWP   I  + V+  + G    + +    +++++S+LDE Q+KR+MA A KCPV +ML
Sbjct:   14 HRLYADEPEDLGGTDLGPSPFEFVLAGLGSCTTITLRMYAN----RKKWPVAHI-GVDVSYKKSGFGADMKSVFIRKITIESDLDEAQLKRMMAIADKCPVHKML 113          
BLAST of NO05G04450 vs. NCBI_GenBank
Match: WP_027539043.1 (OsmC family protein [Bradyrhizobium sp. URHA0002])

HSP 1 Score: 80.5 bits (197), Expect = 6.000e-12
Identity = 53/154 (34.42%), Postives = 79/154 (51.30%), Query Frame = 0
Query:   29 APCRGFAKGSPTHVVMHEMREADSLHAVQGTSGRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRIYSDLMIKEGKWPGKTIEKMSVT----------CSEHGDDHHVPTRIEVRVSLKSNLDEDQIKRLMAAAGKCPVKRMLLGGIK 173
            AP  G  +G P  VV+ E R       V  TSG H   +D    AGG + GPGP + +L+ALG+CT +TMR+Y+D            +E+++VT          C+E      +  +I+  ++++  LD DQ +RLM  A KCPV R L   ++
Sbjct:  257 APVAGATEG-PRKVVVRETRTGKFQQTV--TSGPHQWLADEPAAAGGADTGPGPYDLLLSALGACTSMTMRMYADR-------KSLPVERITVTLKHNKIHAEDCAECETREGLIDQIDRVIAIEGALDADQRRRLMEIADKCPVHRTLTSEVR 400          
The following BLAST results are available for this feature:
BLAST of NO05G04450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_103037869.11.600e-1242.24osmotically inducible protein C [Salinivenus irani... [more]
WP_108519836.11.600e-1234.21osmotically inducible protein C [Bradyrhizobium al... [more]
WP_079587966.12.700e-1232.42OsmC family protein [Bradyrhizobium lablabi] >SHL9... [more]
WP_094892449.12.700e-1234.42OsmC family protein [Bradyrhizobium sp. 2(2017)] >... [more]
XP_024403467.12.700e-1234.71uncharacterized protein LOC112295769 [Physcomitrel... [more]
WP_021076215.14.600e-1233.79OsmC family protein [Bradyrhizobium sp. MOS004] >E... [more]
WP_044538756.14.600e-1234.48OsmC family protein [Bradyrhizobium sp. LTSP885] >... [more]
WP_071843667.14.600e-1233.77OsmC family peroxiredoxin [Hymenobacter sp. DG25A]... [more]
PHQ68531.14.600e-1240.95osmotically inducible protein OsmC [Robiginitomacu... [more]
WP_027539043.16.000e-1234.42OsmC family protein [Bradyrhizobium sp. URHA0002][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003411NSK003411Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04450.1NO05G04450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565022gene_3262Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g101gene2609Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04450.1NO05G04450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04450 ID=NO05G04450|Name=NO05G04450|organism=Nannochloropsis oceanica|type=gene|length=549bp
ATGCTCCTGGCCGCCACCACCAAATCAGCCATGCAGCGGCAAATTTGGCC
CCTCATGAGATCGCCTCTGATGCGTCCGGTGGTCGCGCCTTGTCGTGGTT
TTGCCAAGGGGTCGCCCACACACGTCGTCATGCATGAGATGAGGGAGGCC
GACTCACTCCACGCGGTTCAGGGTACCTCGGGCCGGCACACCTTGTACAG
CGACCTCATGCCCGAAGCAGGGGGCGGCAACAAGGGTCCCGGCCCTAAAG
AATACGTTTTGACGGCACTAGGCTCATGCACGCTCATCACAATGCGGATA
TACTCTGATCTCATGATCAAGGAAGGAAAGTGGCCCGGCAAGACGATTGA
GAAAATGAGTGTCACCTGCAGCGAGCACGGGGACGACCACCACGTCCCCA
CACGTATCGAAGTTCGCGTCTCTCTCAAATCGAATCTCGACGAGGACCAG
ATCAAGCGCCTCATGGCGGCGGCGGGGAAGTGCCCCGTGAAAAGGATGCT
TTTGGGAGGAATCAAGGAAGGCATAACAACGGTGGTTGACAAAGATTGA
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protein sequence of NO05G04450.1

>NO05G04450.1-protein ID=NO05G04450.1-protein|Name=NO05G04450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MLLAATTKSAMQRQIWPLMRSPLMRPVVAPCRGFAKGSPTHVVMHEMREA
DSLHAVQGTSGRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRI
YSDLMIKEGKWPGKTIEKMSVTCSEHGDDHHVPTRIEVRVSLKSNLDEDQ
IKRLMAAAGKCPVKRMLLGGIKEGITTVVDKD*
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Synonyms
Publications