NO05G04450.1, NO05G04450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04450.1
Unique NameNO05G04450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length549
Alignment locationchr5:1155321..1155869 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1155321..1155869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G04450.1 vs.
Match: EWM27933.1 (hypothetical protein Naga_100008g101 [Nannochloropsis gaditana])

HSP 1 Score: 230.3 bits (586), Expect = 4.700e-57
Identity = 113/180 (62.78%), Postives = 141/180 (78.33%), Query Frame = 0
Query:    1 MLLAATTKSAMQRQIWPLMRS-PLMRPVVAPCRGFAKGSPTHVVMHEMREADSLHAVQGTSGRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRIYSDLMIKEGKWPGKTIEKMSVTCSEHGDDHHVPTRIEVRVSLKSNLDEDQIKRLMAAAGKCPVKRMLLGGIKEGITTVV 180
            M+LA    +A+++  + L RS P+   ++ P RG AKGSPT V   E REA++ + +Q  SGRHTLYSDLMPEAGG +KGP PKEY L AL SCTL+T+R+YSD MIK GKWPGK+IEK+SV+CSEHGDD HVP  I+V + L+SNLDE+QIKRL+AAA KCPVKRM+ GG+K GITTV+
Sbjct:    1 MILA---NAALRQSSFALSRSSPVRSRLIIPFRGLAKGSPTQVAAEETREANAGYGIQIVSGRHTLYSDLMPEAGGNDKGPSPKEYALVALSSCTLMTVRMYSDSMIKSGKWPGKSIEKLSVSCSEHGDDQHVPLNIQVELKLRSNLDEEQIKRLVAAAEKCPVKRMMKGGVKNGITTVL 177          
The following BLAST results are available for this feature:
BLAST of NO05G04450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27933.14.700e-5762.78hypothetical protein Naga_100008g101 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04450NO05G04450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04450.1NO05G04450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04450.1.cds1NO05G04450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04450.1 ID=NO05G04450.1|Name=NO05G04450.1|organism=Nannochloropsis oceanica|type=mRNA|length=549bp
ATGCTCCTGGCCGCCACCACCAAATCAGCCATGCAGCGGCAAATTTGGCC
CCTCATGAGATCGCCTCTGATGCGTCCGGTGGTCGCGCCTTGTCGTGGTT
TTGCCAAGGGGTCGCCCACACACGTCGTCATGCATGAGATGAGGGAGGCC
GACTCACTCCACGCGGTTCAGGGTACCTCGGGCCGGCACACCTTGTACAG
CGACCTCATGCCCGAAGCAGGGGGCGGCAACAAGGGTCCCGGCCCTAAAG
AATACGTTTTGACGGCACTAGGCTCATGCACGCTCATCACAATGCGGATA
TACTCTGATCTCATGATCAAGGAAGGAAAGTGGCCCGGCAAGACGATTGA
GAAAATGAGTGTCACCTGCAGCGAGCACGGGGACGACCACCACGTCCCCA
CACGTATCGAAGTTCGCGTCTCTCTCAAATCGAATCTCGACGAGGACCAG
ATCAAGCGCCTCATGGCGGCGGCGGGGAAGTGCCCCGTGAAAAGGATGCT
TTTGGGAGGAATCAAGGAAGGCATAACAACGGTGGTTGACAAAGATTGA
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protein sequence of NO05G04450.1

>NO05G04450.1-protein ID=NO05G04450.1-protein|Name=NO05G04450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MLLAATTKSAMQRQIWPLMRSPLMRPVVAPCRGFAKGSPTHVVMHEMREA
DSLHAVQGTSGRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRI
YSDLMIKEGKWPGKTIEKMSVTCSEHGDDHHVPTRIEVRVSLKSNLDEDQ
IKRLMAAAGKCPVKRMLLGGIKEGITTVVDKD*
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mRNA from alignment at chr5:1155321..1155869+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04450.1 ID=NO05G04450.1|Name=NO05G04450.1|organism=Nannochloropsis oceanica|type=mRNA|length=549bp|location=Sequence derived from alignment at chr5:1155321..1155869+ (Nannochloropsis oceanica)
ATGCTCCTGGCCGCCACCACCAAATCAGCCATGCAGCGGCAAATTTGGCC CCTCATGAGATCGCCTCTGATGCGTCCGGTGGTCGCGCCTTGTCGTGGTT TTGCCAAGGGGTCGCCCACACACGTCGTCATGCATGAGATGAGGGAGGCC GACTCACTCCACGCGGTTCAGGGTACCTCGGGCCGGCACACCTTGTACAG CGACCTCATGCCCGAAGCAGGGGGCGGCAACAAGGGTCCCGGCCCTAAAG AATACGTTTTGACGGCACTAGGCTCATGCACGCTCATCACAATGCGGATA TACTCTGATCTCATGATCAAGGAAGGAAAGTGGCCCGGCAAGACGATTGA GAAAATGAGTGTCACCTGCAGCGAGCACGGGGACGACCACCACGTCCCCA CACGTATCGAAGTTCGCGTCTCTCTCAAATCGAATCTCGACGAGGACCAG ATCAAGCGCCTCATGGCGGCGGCGGGGAAGTGCCCCGTGAAAAGGATGCT TTTGGGAGGAATCAAGGAAGGCATAACAACGGTGGTTGACAAAGATTGA
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Coding sequence (CDS) from alignment at chr5:1155321..1155869+

>NO05G04450.1 ID=NO05G04450.1|Name=NO05G04450.1|organism=Nannochloropsis oceanica|type=CDS|length=549bp|location=Sequence derived from alignment at chr5:1155321..1155869+ (Nannochloropsis oceanica)
ATGCTCCTGGCCGCCACCACCAAATCAGCCATGCAGCGGCAAATTTGGCC
CCTCATGAGATCGCCTCTGATGCGTCCGGTGGTCGCGCCTTGTCGTGGTT
TTGCCAAGGGGTCGCCCACACACGTCGTCATGCATGAGATGAGGGAGGCC
GACTCACTCCACGCGGTTCAGGGTACCTCGGGCCGGCACACCTTGTACAG
CGACCTCATGCCCGAAGCAGGGGGCGGCAACAAGGGTCCCGGCCCTAAAG
AATACGTTTTGACGGCACTAGGCTCATGCACGCTCATCACAATGCGGATA
TACTCTGATCTCATGATCAAGGAAGGAAAGTGGCCCGGCAAGACGATTGA
GAAAATGAGTGTCACCTGCAGCGAGCACGGGGACGACCACCACGTCCCCA
CACGTATCGAAGTTCGCGTCTCTCTCAAATCGAATCTCGACGAGGACCAG
ATCAAGCGCCTCATGGCGGCGGCGGGGAAGTGCCCCGTGAAAAGGATGCT
TTTGGGAGGAATCAAGGAAGGCATAACAACGGTGGTTGACAAAGATTGA
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Synonyms
Publications