NO05G04450, NO05G04450 (gene) Nannochloropsis oceanica

Overview
NameNO05G04450
Unique NameNO05G04450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length549
Alignment locationchr5:1155321..1155869 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1155321..1155869 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036102OsmC/Ohrsf
IPR003718OsmC/Ohr_fam
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO05G04450 vs. NCBI_GenBank
Match: EWM27933.1 (hypothetical protein Naga_100008g101 [Nannochloropsis gaditana])

HSP 1 Score: 230.3 bits (586), Expect = 4.700e-57
Identity = 113/180 (62.78%), Postives = 141/180 (78.33%), Query Frame = 0
Query:    1 MLLAATTKSAMQRQIWPLMR-SPLMRPVVAPCRGFAKGSPTHVVMHEMREADSLHAVQGTSGRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRIYSDLMIKEGKWPGKTIEKMSVTCSEHGDDHHVPTRIEVRVSLKSNLDEDQIKRLMAAAGKCPVKRMLLGGIKEGITTVV 180
            M+LA    +A+++  + L R SP+   ++ P RG AKGSPT V   E REA++ + +Q  SGRHTLYSDLMPEAGG +KGP PKEY L AL SCTL+T+R+YSD MIK GKWPGK+IEK+SV+CSEHGDD HVP  I+V + L+SNLDE+QIKRL+AAA KCPVKRM+ GG+K GITTV+
Sbjct:    1 MILA---NAALRQSSFALSRSSPVRSRLIIPFRGLAKGSPTQVAAEETREANAGYGIQIVSGRHTLYSDLMPEAGGNDKGPSPKEYALVALSSCTLMTVRMYSDSMIKSGKWPGKSIEKLSVSCSEHGDDQHVPLNIQVELKLRSNLDEEQIKRLVAAAEKCPVKRMMKGGVKNGITTVL 177          
BLAST of NO05G04450 vs. NCBI_GenBank
Match: GAQ83154.1 (hypothetical protein KFL_001370240 [Klebsormidium nitens])

HSP 1 Score: 93.6 bits (231), Expect = 6.900e-16
Identity = 58/150 (38.67%), Postives = 83/150 (55.33%), Query Frame = 0
Query:   32 RGFAKGSPTHVVMHEMREADSLHAVQGTSGRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRIYSDLMIKEGKWPGKTIEKMSVTCSEH-GDDHHVPTRIEVRVSLKS-NLDEDQIKRLMAAAGKCPVKRMLLGGIKEGITTVV 180
            R  + GSP HV + E  +    H     SGRH L  DL PE+GG ++GP PKE +++ LG CT +T+R+Y+D      KWP   +E+++V   E      HVP  + V V L    L   Q  RL     +CPVKRM+ G + +GI++V+
Sbjct:    5 RCMSAGSPEHVTVEEDPDDVRYHHTI-RSGRHVLKGDLAPESGGTDEGPSPKELLMSGLGLCTSMTIRMYAD----RKKWP---LERVNVEVREFTKPGAHVPEELLVTVHLTGPQLTYAQRARLHEIGDRCPVKRMIKGEMPKGISSVL 146          
BLAST of NO05G04450 vs. NCBI_GenBank
Match: WP_092515997.1 (OsmC family protein [Afipia sp. GAS231] >SDP14526.1 putative redox protein [Afipia sp. GAS231])

HSP 1 Score: 88.2 bits (217), Expect = 2.900e-14
Identity = 62/181 (34.25%), Postives = 91/181 (50.28%), Query Frame = 0
Query:    2 LLAATTKSAMQRQIWPLMRSPLMRPVVAPCRGFAKGSPTHVVMHEMREADSLHAVQGTSGRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRIYSDLMIKEGKWPGKTIEKMSVT----------CSEHGDDHHVPTRIEVRVSLKSNLDEDQIKRLMAAAGKCPVKRMLLGGIK 173
            LL+A   SA    +        + PV AP    A+G P +VV+ E R       V  TSG H + +D    AGG + GPGP + +L+ALG+CT +TMR+Y+D            +E+++VT          C+E      +  +I+  +S++  LD DQ KRLM  A KCPV R L   ++
Sbjct:  229 LLSAKRDSAYVADVIAAWAERYVEPVAAPVAVAAEG-PRNVVVRETRAGKFQQTV--TSGPHQMLADEPVAAGGEDSGPGPYDLLLSALGACTSMTMRMYADR-------KSLPVERITVTLKHNKIHAEDCAECETKEGLIDQIDRVISVEGALDADQRKRLMEIADKCPVHRTLTSEVR 399          
BLAST of NO05G04450 vs. NCBI_GenBank
Match: WP_057854094.1 (OsmC family protein [Bradyrhizobium valentinum] >KRQ92808.1 osmotically inducible protein C [Bradyrhizobium valentinum] >KRQ98805.1 osmotically inducible protein C [Bradyrhizobium valentinum])

HSP 1 Score: 86.3 bits (212), Expect = 1.100e-13
Identity = 59/174 (33.91%), Postives = 84/174 (48.28%), Query Frame = 0
Query:    2 LLAATTKSAMQRQIWPLMRSPLMRPVVAPCRGFAKGSPTHVVMHEMREADSLHAVQGTSGRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRIYSDLMIKEGKWPGKTIEKMSV---TCSEHGDDHHVPTRIEVRVSLKSNLDEDQIKRLMAAAGKCPVKRMLLGGIK 173
            LL+    SA    +        + PV A     A  +P HVV+ E R +     V  TSG H + +D     GG + GPGP ++VL  LG+CT +TMR+Y++      +    T+E   +    C E      +  RI+  +S++  LD DQ KRLM  A KCPV R L   I+
Sbjct:  229 LLSGKRDSAYVAGVIAAWAERYIEPVAAQPAAAAIEAPRHVVVRETRNSKFQQTV--TSGPHEMVADEPVGVGGQDSGPGPYDFVLAGLGACTSMTMRMYAERKSLPVERITVTLEHSKIYAKDCEECETREGMLDRIDRVISIEGVLDADQRKRLMEIADKCPVHRTLTSEIR 400          
BLAST of NO05G04450 vs. NCBI_GenBank
Match: WP_065756546.1 (OsmC family protein [Bradyrhizobium paxllaeri] >OCK56203.1 osmotically inducible protein C [Bradyrhizobium paxllaeri])

HSP 1 Score: 84.0 bits (206), Expect = 5.400e-13
Identity = 53/159 (33.33%), Postives = 80/159 (50.31%), Query Frame = 0
Query:   24 MRPVVAPCRGFAKGSPTHVVMHEMREADSLHAVQGTSGRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRIYSDLMIKEGKWPGKTIEKMSVT----------CSEHGDDHHVPTRIEVRVSLKSNLDEDQIKRLMAAAGKCPVKRMLLGGIK 173
            + P+ A     A  +P HVV+ E R +     V  T+G H + +D     GG + GPGP +++LT LG+CT +TMR+Y+D            +E+++VT          C E      +  +I+  +S++  LD DQ  RLM  A KCPV R L   I+
Sbjct:  251 IEPIAAQPAAAASEAPRHVVVRETRNSKLQQIV--TTGPHEMLADEPVALGGQDSGPGPYDFLLTGLGACTSMTMRMYADR-------KSLPLERVTVTLKHSKIHARDCEECETREGMLDQIDRVISIEGALDADQRARLMEIADKCPVHRTLTSEIR 400          
BLAST of NO05G04450 vs. NCBI_GenBank
Match: WP_006576636.1 (OsmC family peroxiredoxin [Cupriavidus sp. HPC(L)] >ESJ26783.1 osmotically inducible protein C [Cupriavidus sp. HPC(L)])

HSP 1 Score: 83.6 bits (205), Expect = 7.100e-13
Identity = 50/137 (36.50%), Postives = 76/137 (55.47%), Query Frame = 0
Query:   40 THVVMHEMREADSLHAVQGTSGRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRIYSDLMIKEGKWPGKTIEKMSVTCSEHGDDHHVPTRIEVRVSLKSNLDEDQIKRLMAAAGKCPVKRMLLGGIKEGIT 177
            T V    +R A   +  + T+G+H L SD    AGG + GP P +YVLT LG+CT IT+R+Y+D   ++G   G    ++++  +  GD     TRIE  +   ++L ++Q +RL+  AGK PV R L  G+    T
Sbjct:    2 TPVSHASVRAAGPNYRHEITTGKHQLVSDEPARAGGQDAGPAPYDYVLTGLGACTAITLRMYAD---RKGWDLGDLCVELTLLKNRDGD-----TRIERTLHTSASLSDEQWERLLEIAGKTPVTRTLQAGVSIATT 130          
BLAST of NO05G04450 vs. NCBI_GenBank
Match: WP_074831846.1 (MULTISPECIES: OsmC family protein [Bradyrhizobium] >SDH87547.1 putative redox protein [Bradyrhizobium ottawaense] >SED99329.1 putative redox protein [Bradyrhizobium lablabi])

HSP 1 Score: 83.2 bits (204), Expect = 9.300e-13
Identity = 52/155 (33.55%), Postives = 82/155 (52.90%), Query Frame = 0
Query:   28 VAPCRGFAKGSPTHVVMHEMREADSLHAVQGTSGRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRIYSDLMIKEGKWPGKTIEKMSVT----------CSEHGDDHHVPTRIEVRVSLKSNLDEDQIKRLMAAAGKCPVKRMLLGGIK 173
            +AP     +G P +VV+ E R +     V  TSG H + +D    AGG + GPGP +++L+ LG+CT +TMR+Y+D            +E+++VT          C+E      +  +I+  ++++  LD DQ KRLM  A KCPV R L   ++
Sbjct:  256 IAPVAATTEG-PRNVVVRETRNSKFQQTV--TSGPHQMLADEPVAAGGADTGPGPYDFLLSGLGACTSMTMRMYADR-------KSLPVERITVTLKHNKIHAEDCAECETREGMLDQIDRVIAIEGALDADQRKRLMEIADKCPVHRTLTSEVR 400          
BLAST of NO05G04450 vs. NCBI_GenBank
Match: OJU32278.1 (osmotically inducible protein C [Alphaproteobacteria bacterium 65-37])

HSP 1 Score: 83.2 bits (204), Expect = 9.300e-13
Identity = 55/143 (38.46%), Postives = 77/143 (53.85%), Query Frame = 0
Query:   35 AKGSPTHVVMHEMREADSLHAVQGTSGRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRIYSDLMIKEGKWPGKTIEKMSVT----------CSEHGDDHHVPTRIEVRVSLKSNLDEDQIKRLMAAAGKCPVKRML 168
            A   P  VV+ E  +A  L A    SG H L +D     GG + GPGP +Y+L ALGSCT +T+R+Y+ L     KWP   ++K++VT          C+E         RIE  ++L+  LD++Q KRL+  A +CPV R L
Sbjct:    5 AAAPPPGVVIVEDSDAGPL-AETIRSGAHVLRADEPVAVGGNDTGPGPYDYLLAALGSCTAMTLRMYARLK----KWP---LQKVTVTLKHDKIHATDCAECETKEGKVDRIERVIALEGPLDDEQRKRLLEIADRCPVHRTL 139          
BLAST of NO05G04450 vs. NCBI_GenBank
Match: WP_064576279.1 (OsmC family peroxiredoxin [Cupriavidus gilardii])

HSP 1 Score: 82.8 bits (203), Expect = 1.200e-12
Identity = 50/137 (36.50%), Postives = 76/137 (55.47%), Query Frame = 0
Query:   40 THVVMHEMREADSLHAVQGTSGRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRIYSDLMIKEGKWPGKTIEKMSVTCSEHGDDHHVPTRIEVRVSLKSNLDEDQIKRLMAAAGKCPVKRMLLGGIKEGIT 177
            T V    +R A   +  + T+G+H L SD    AGG + GP P +YVLT LG+CT IT+R+Y+D   ++G   G    ++++  +  GD     TRIE  +   ++L ++Q +RL+  AGK PV R L  G+    T
Sbjct:    2 TPVSHASVRAAGPNYRHEITTGKHQLVSDEPARAGGQDAGPAPYDYVLTGLGACTAITLRMYAD---RKGWDLGDLRVELTLLKNRDGD-----TRIERTLHTSASLSDEQWERLLEIAGKTPVTRTLQAGVSIATT 130          
BLAST of NO05G04450 vs. NCBI_GenBank
Match: WP_025733138.1 (OsmC family peroxiredoxin [Carnimonas nigrificans])

HSP 1 Score: 82.4 bits (202), Expect = 1.600e-12
Identity = 44/140 (31.43%), Postives = 78/140 (55.71%), Query Frame = 0
Query:   35 AKGSPTHVVMHEMREADSLHAVQGTSGRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRIYSDLMIKEGKWPGKTIEKMSVTCSEHGDDHHVPTRIEVRVSLKSNLDEDQIKRLMAAAGKCPVKRMLLGGIKEG 175
            + G+P  V +H              S  H   +D+ P++GGG+  P P+ Y+L ALG+CT +T+R+Y++      +WP + ++ ++V+ ++H   H     +E  +SL+  L++ Q +RL+  A KCPV R+L G +  G
Sbjct:   10 SNGTPWQVALH--------------SDSHQWQADVDPQSGGGDLAPNPESYLLGALGACTAMTVRMYAE----RKQWPLQGVD-VTVSIAQHDKQH---VHLERHISLQGELNDQQRQRLLEIAEKCPVHRLLTGEVTIG 127          
The following BLAST results are available for this feature:
BLAST of NO05G04450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27933.14.700e-5762.78hypothetical protein Naga_100008g101 [Nannochlorop... [more]
GAQ83154.16.900e-1638.67hypothetical protein KFL_001370240 [Klebsormidium ... [more]
WP_092515997.12.900e-1434.25OsmC family protein [Afipia sp. GAS231] >SDP14526.... [more]
WP_057854094.11.100e-1333.91OsmC family protein [Bradyrhizobium valentinum] >K... [more]
WP_065756546.15.400e-1333.33OsmC family protein [Bradyrhizobium paxllaeri] >OC... [more]
WP_006576636.17.100e-1336.50OsmC family peroxiredoxin [Cupriavidus sp. HPC(L)]... [more]
WP_074831846.19.300e-1333.55MULTISPECIES: OsmC family protein [Bradyrhizobium]... [more]
OJU32278.19.300e-1338.46osmotically inducible protein C [Alphaproteobacter... [more]
WP_064576279.11.200e-1236.50OsmC family peroxiredoxin [Cupriavidus gilardii][more]
WP_025733138.11.600e-1231.43OsmC family peroxiredoxin [Carnimonas nigrificans][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003411NSK003411Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04450.1NO05G04450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565022gene_3262Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g101gene2609Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04450.1NO05G04450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04450 ID=NO05G04450|Name=NO05G04450|organism=Nannochloropsis oceanica|type=gene|length=549bp
ATGCTCCTGGCCGCCACCACCAAATCAGCCATGCAGCGGCAAATTTGGCC
CCTCATGAGATCGCCTCTGATGCGTCCGGTGGTCGCGCCTTGTCGTGGTT
TTGCCAAGGGGTCGCCCACACACGTCGTCATGCATGAGATGAGGGAGGCC
GACTCACTCCACGCGGTTCAGGGTACCTCGGGCCGGCACACCTTGTACAG
CGACCTCATGCCCGAAGCAGGGGGCGGCAACAAGGGTCCCGGCCCTAAAG
AATACGTTTTGACGGCACTAGGCTCATGCACGCTCATCACAATGCGGATA
TACTCTGATCTCATGATCAAGGAAGGAAAGTGGCCCGGCAAGACGATTGA
GAAAATGAGTGTCACCTGCAGCGAGCACGGGGACGACCACCACGTCCCCA
CACGTATCGAAGTTCGCGTCTCTCTCAAATCGAATCTCGACGAGGACCAG
ATCAAGCGCCTCATGGCGGCGGCGGGGAAGTGCCCCGTGAAAAGGATGCT
TTTGGGAGGAATCAAGGAAGGCATAACAACGGTGGTTGACAAAGATTGA
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protein sequence of NO05G04450.1

>NO05G04450.1-protein ID=NO05G04450.1-protein|Name=NO05G04450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MLLAATTKSAMQRQIWPLMRSPLMRPVVAPCRGFAKGSPTHVVMHEMREA
DSLHAVQGTSGRHTLYSDLMPEAGGGNKGPGPKEYVLTALGSCTLITMRI
YSDLMIKEGKWPGKTIEKMSVTCSEHGDDHHVPTRIEVRVSLKSNLDEDQ
IKRLMAAAGKCPVKRMLLGGIKEGITTVVDKD*
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Synonyms
Publications