NO05G04360, NO05G04360 (gene) Nannochloropsis oceanica

Overview
NameNO05G04360
Unique NameNO05G04360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2793
Alignment locationchr5:1122375..1125167 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1122375..1125167 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0035091phosphatidylinositol binding
GO:0035091phosphatidylinositol binding
Vocabulary: INTERPRO
TermDefinition
IPR036871PX_dom_sf
IPR001683Phox
Homology
[Close]
BLAST of NO05G04360 vs. NCBI_GenBank
Match: XP_012207213.1 (hypothetical protein SPRG_12057 [Saprolegnia parasitica CBS 223.65] >KDO22070.1 hypothetical protein SPRG_12057 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 69.3 bits (168), Expect = 4.500e-8
Identity = 56/184 (30.43%), Postives = 83/184 (45.11%), Query Frame = 0 
Query:   59 VRHRYSDFEALSRGLQRRFGTEGMLIPPLPPKGLRKKHDVDFIKQRMNGLQFFMEGIAASPFLFHDILTQKFLKRTTTEGAGSIVAILDEGDNSVGQIIPLPSSXXXXXXXXXXXXXASMAAMH-NQGYIQWTEFLSSFVLPPDPDVMVEKVRIELDSCEKVLSEVMEGGKALAAGFGQYARGL 242
            VR R+SDFE L   L  R+   GML+P LP K + K     FI+ RM GL  F+  + ASPFL HD                S+V  L+ GD+     I                  +S+   H  +G++QW + L    LP D D M+  ++ + +  +K  ++++   K LA     YA+ L
Sbjct:   77 VRRRFSDFEWLHTTLCARY--IGMLLPSLPEKTVYKTE--AFIRGRMRGLALFLNHVIASPFLRHD---------------ASVVGFLNVGDDGEWDHI----------------KKSSVVMEHAGEGHMQWMKCLLHTTLPDDADQMLLNLKRDAEFVDKACNDLLLCSKRLADKSAAYAKEL 225
[Close]
BLAST of NO05G04360 vs. NCBI_GenBank
Match: XP_008608974.1 (hypothetical protein SDRG_05057 [Saprolegnia diclina VS20] >EQC37454.1 hypothetical protein SDRG_05057 [Saprolegnia diclina VS20])

HSP 1 Score: 67.4 bits (163), Expect = 1.700e-7
Identity = 54/184 (29.35%), Postives = 82/184 (44.57%), Query Frame = 0 
Query:   59 VRHRYSDFEALSRGLQRRFGTEGMLIPPLPPKGLRKKHDVDFIKQRMNGLQFFMEGIAASPFLFHDILTQKFLKRTTTEGAGSIVAILDEGDNSVGQIIPLPSSXXXXXXXXXXXXXASMAAMH-NQGYIQWTEFLSSFVLPPDPDVMVEKVRIELDSCEKVLSEVMEGGKALAAGFGQYARGL 242
            VR R+SDFE L   L  R+   GMLIP LP K + K     FI+ RM GL  F+  + ASPFL HD     FL             ++D+G+                         +S+   H  +G++QW + L    LP D D ++  ++ + +  +K  ++++   K LA     YA+ L
Sbjct:   77 VRRRFSDFEWLHTTLCARY--IGMLIPSLPEKTVYKTE--AFIRGRMRGLALFLNHVVASPFLRHDASVVGFLN------------VVDDGE-------------------WDHVKKSSVVMEHAGEGHMQWMKCLLHTTLPDDADQLLLNLKRDAEFVDKACNDLLLCSKRLADKSAAYAKEL 225
The following BLAST results are available for this feature:
BLAST of NO05G04360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_012207213.14.500e-830.43hypothetical protein SPRG_12057 [Saprolegnia paras... [more]
XP_008608974.11.700e-729.35hypothetical protein SDRG_05057 [Saprolegnia dicli... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04360.1NO05G04360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585075gene_3251Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04360.1NO05G04360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04360 ID=NO05G04360|Name=NO05G04360|organism=Nannochloropsis oceanica|type=gene|length=2793bp
ATATGGGCCAACCTCGGTGTTTTATATAAATATACAATACCTTCTTCTAC
TCCTTCCCTGCTCATGCTTTTTGGGTCCCTCCTGCCATGATCTTTTTGCG
TCCATGCACTCATCACTACACCCATAGAGGACGATAGTTATCAGAAGAAC
AGGCGGCAGGAGAAGCGGCGGCGGCAGCAGGAAAAGACTCACTCAAAAGT
GTAAGAGCAAAAACACCATCATCACAGGCAGAGAGGGCAGGACCAGCGGT
GGTTGGGGCGGTAGCACCATCCATCTCTTCTCAACATCTCGTCGCGATAT
GAGTAGCTTCGTCCAAGAGTACGAGCAACATCGACCCTGCATCGTCGTGG
AACTCCCCGAGCTGCGCAAAACAAGCGGGGGCCTCTTCTCCGCTCGTGAG
GTGATGACTTACGCCGTTTGTGTCCAGGGTGGCAATTCCTTCGAGAGCCC
GCGGCCCTTTCCCAAGCACGGGGTCCGACATCGCTATTCGGATTTTGAGG
CACTTTCACGGGGACTGCAACGACGCTTTGGCACGGAGGGGATGTTAATC
CCACCGTTGCCCCCAAAGGGCCTGCGGAAAAAGCACGATGTCGACTTTAT
TAAGCAGCGAATGAATGGCTTGCAGTTTTTCATGGAAGGCATCGCTGCTT
CTCCCTTCTTATTCCATGACATACTCACGCAAAAATTTCTGAAGCGCACC
ACCACCGAAGGTGCGGGCTCGATTGTGGCAATCCTGGATGAAGGAGACAA
CTCTGTCGGACAAATTATTCCCTTGCCCTCCTCCTCCTCTTCTTCAAAGC
CGCCGTCCTCCCCCCTCTCTTCCGCCTCTATGGCTGCCATGCATAATCAG
GGCTACATACAATGGACTGAATTTCTGTCCTCTTTCGTTCTGCCACCCGA
CCCGGATGTGATGGTGGAAAAGGTCCGCATTGAGCTCGATTCATGCGAGA
AGGTACTGAGTGAGGTGATGGAGGGGGGCAAGGCATTGGCGGCTGGTTTT
GGGCAGTACGCGCGGGGGTTGCAAGCCTTTAGTTACTCTATGCATGTCCT
GGCAGAAGGGGAGCGGAGGGTGGAGGTTTTGAACAAAGTCGAGGTAACGG
AGGGTAGGGAGGATAGTAGTAGCGCCGAGCAAGAGAGCAGCAACGACAAC
GCTTCATCTCCACTGAGGGCGCTCTACACCATACCCCTCCCCGAGCTCGC
CTCCCACACCGCTGATCTCTACGCAAACATCGTCCCTACTTTCCTGGCCG
CCCCGGGACAAGCCTCCTTCTTTTTCTCCCCCCTCATCGAGTACGAGCAA
AGCCGCATCCAATCCCTCAAAACTCTCCTCGCAGGTCGCAACGACTTACG
CACCTCCATCCTCAAGCTCCAAAAAAAGGTCGAAGGTCTCCGCCAGCCCT
CCGCCTCCTCTGCCGATCGCGAACTCTACGAAAGCCGCCTTGCTCAAGCA
GAAGTCCACCTCTACAAATTCACCAAAGCCCTCCTCTGTTACACCCTCCC
TGCAGTCGCGCAACAACGCACCTGGAACCTCAACCGAGCTTTGGCCAACC
TCGCAGCGATTTCGACACCAGCAGCCTCAGCATCGTTTGGTCAAACCATG
GGTTATTTGAAAGTGTTAGGATGGGATGCAGCGGAGGTCGTGGAGGAAGC
CAATGAGAACGGGGTAGCCTTAATGGTGCCACATATACCGGTCATAGCCT
TGCCTCAAGCAGGAGAGGAGAAGAATATGCAGCGGGAGGAGCGGCAGAAG
GAAACGACAGTGCTGAAACAAAAAAGTCCTGCCGCAACAGCATCGGCGGC
GGTGGTGGCGGCGCGCAAACCAGGTAGTTTTTTGTACGACAAGCCCTTAC
CTTCTCCTGTAGCGGTGGAGAGTGCAGGTGGAGAGGAGGAGAGAAAGAGA
GGTAGCGGTCTAAGCACCAGCGACAGCGGCGGAGATGGTAATAGCATTAC
TACTACCTGGCCGATGACGGACCCTATCGTGACAGTGGCTTCCTCATTGG
GATCAGGCGACCGCAAGGGAGCCAGTGGGAAAGCTCCCTGGGAAAGCGAC
GACGAGGTGGAGAACCCGTTTGAGAAGGAGGAGGGGGTGTAAGCCAGTAC
GTCCAGGTTTTGAGTTTTTTTTTCAGAAGCTAGATAAACATAAAATTTCT
CCATGATTTGTACAGTCAAGTCGCCGTACGAAGCGCAAGCAGAAAGAGAG
CGAGAAATGAAGCCCGACAGAGAAAAAGTAATGGAGTGTGGTTGAGGGAG
TGTCTGAATATGCGTGTGTGATATAGGGCACGGCGTCAGAAAGAAAGGCG
ATGGGTTTAAGAAGCGGATGGATTGAGTACCTGATGCAGGTGCATGATCG
TCTTCCAGTTATGCATGTATTAGAAAAAAATTAAGTGAAATGCAAATGTA
TGATAGGGGACACACACACAAGGAAGTCGTTATGTCTTTTTTCACCAGAG
AATTGTGTGGTTTCTCTCATGGTACGTACGGATTACTTAGTGAACAGGAA
ACAGGACAAGAAGCAAGAAGAGGTTTAAAATTCAAGATTGAATTCAGGAG
GGAAAGATGCAGGAGAAAAGCTGCATGGTAAAGAGAGTGTATATTCTATG
GCTGTGTGTCAGGGTCGTGCGTAAGCGAGTGTTTACTTCTATCCACTCGC
ACACACTGATAATTTACAGCATTTGGTGCGACAAACTAATAGCGGACAAG
ATGTGACGATAACAAATCCTCACATTTCATTTATATAGCACGGAATGAAC
AAGAGAGACTACAACACTCAAACGAAATAGTCTTGCGTCTTCA
back to top

protein sequence of NO05G04360.1

>NO05G04360.1-protein ID=NO05G04360.1-protein|Name=NO05G04360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=598bp
MSSFVQEYEQHRPCIVVELPELRKTSGGLFSAREVMTYAVCVQGGNSFES
PRPFPKHGVRHRYSDFEALSRGLQRRFGTEGMLIPPLPPKGLRKKHDVDF
IKQRMNGLQFFMEGIAASPFLFHDILTQKFLKRTTTEGAGSIVAILDEGD
NSVGQIIPLPSSSSSSKPPSSPLSSASMAAMHNQGYIQWTEFLSSFVLPP
DPDVMVEKVRIELDSCEKVLSEVMEGGKALAAGFGQYARGLQAFSYSMHV
LAEGERRVEVLNKVEVTEGREDSSSAEQESSNDNASSPLRALYTIPLPEL
ASHTADLYANIVPTFLAAPGQASFFFSPLIEYEQSRIQSLKTLLAGRNDL
RTSILKLQKKVEGLRQPSASSADRELYESRLAQAEVHLYKFTKALLCYTL
PAVAQQRTWNLNRALANLAAISTPAASASFGQTMGYLKVLGWDAAEVVEE
ANENGVALMVPHIPVIALPQAGEEKNMQREERQKETTVLKQKSPAATASA
AVVAARKPGSFLYDKPLPSPVAVESAGGEEERKRGSGLSTSDSGGDGNSI
TTTWPMTDPIVTVASSLGSGDRKGASGKAPWESDDEVENPFEKEEGV*
back to top
Synonyms
Publications