NO05G04270, NO05G04270 (gene) Nannochloropsis oceanica

Overview
NameNO05G04270
Unique NameNO05G04270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3075
Alignment locationchr5:1097046..1100120 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1097046..1100120 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019358NEMP_fam
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO05G04270 vs. NCBI_GenBank
Match: EWM28036.1 (hypothetical protein Naga_100008g74 [Nannochloropsis gaditana])

HSP 1 Score: 639.0 bits (1647), Expect = 1.700e-179
Identity = 344/645 (53.33%), Postives = 442/645 (68.53%), Query Frame = 0 
Query:   64 MRARLLPCLLLALAL-------LAVTTTSAS--PFAEECLDTDLQAPPERGPKKVDVEARPHTPNVGDVMANVHRKMPAALPGWMGRIWSSVSHITAPHIRKLVHYGGEVLRPGEDMAERCKKRRKPIVSGADTGTGDSSSSGSDTGLDACTLLDVSWSLGQQLGNLGKNASAKTAWWLSQEVPRVALPFHLMWVELAVEVYPVTRADVASLILHQRPHFVVQLCDILSEYLVRALHSIPMLDFLINARYDLLYIPDAACPLTQVDGLIFRAPLTAEGFCEIRPCEHESSIAGQTAAGGVSPFCECDLTKKRCRLRAQSLRDFQLLVDEPLASKTFDAQASTSVAWVTVPDWFPPRVQTALQGLLPLYVFNFLVGLLFLWFAEPLSRSTIFHVFLSAILGLFSGLLLAGVVLNQMIRTVKKLQPFSGLATLMTSVVGVVVYHRFRGGAEILLLLAGALKGMWGDRWGQAYLVGSGLLGWXXXXXXXXXXXXXXXXXXKRGGWIKAWFNGQRNIRVGLTVLGLSFLWRSVPTPTMRVVVVLLVLLREWWGYALHRLHMYRYRSPETHRFLAREGKERGRAGGMGHRARXXXXXXXXXXXXXXXXXXTTRALRGLRTYVQKNPESTHRVRHGRGEMERFKGGGPDYV 700
            MR R +  ++L  AL        A T  SA   P  +ECLD DL     + PKKV+VEARP  P +GDV+ANV  K+P  +PGW   +WSS+  I APH++K++ YGGE+LRPGE++A+RCK+RRK            + +S ++ GLDAC LLDVSWSLG+QLG L  NAS++TAWWL++EVPRV LPFHL+WV++AV++ PVT +DVAS+ILHQRP++VVQ CD+ S +  R L  +PMLDFL+NARYD LYI D ACPL QVDGL+FRAPLT +GFCE RPC+ ESSI GQ   G  + +CECDL    CRLR + LRDFQ+LVDEPLA K F A AS+ VAWVTVP+W PP  +   QGL P Y+FNFLVG++ L+ AE L+ S +FH  ++A+LGLFSGL+LAG++LN + RTV++L+PFSGLATL+TS   +++Y R  G   +L L    L  +W D  GQ  +V   LLG                   +R GW+  +FNGQ NIRV LT + L FLWR+VPTP + V+++LLVL R +WG+ALHRL MY +RSP+THRFLAR       AG      R         XXXXXXXX TTR L+ LR YVQ+ PE+THRVRHG+ ++ RF+ GG D++
Sbjct:    3 MRLRRIVYVILFCALAFQHVQTFATTAESAESVPVLDECLDEDL----PQAPKKVEVEARPRAPRLGDVVANVKNKVPVEVPGWFAGMWSSMRQIAAPHVQKVIEYGGEMLRPGEEIADRCKRRRK------------TRTSSTEGGLDACALLDVSWSLGRQLGALSSNASSRTAWWLAREVPRVILPFHLLWVDVAVDISPVTSSDVASIILHQRPYWVVQACDVFSAFFARVLQRLPMLDFLMNARYDKLYIHDPACPLVQVDGLVFRAPLTPDGFCETRPCQGESSITGQFPPGEHASYCECDLPTGYCRLRVEPLRDFQVLVDEPLAFKRFAAHASSEVAWVTVPEWLPPWARLTFQGLFPRYLFNFLVGIILLYSAETLAESRLFHAGIAALLGLFSGLVLAGLLLNHVFRTVRRLEPFSGLATLLTSATAMLLYQRL-GRHSLLPLTQQLLGALWADGKGQLVIVACALLG-VGLTWGMGWFLETEEEAKERPGWLHLYFNGQHNIRVALTAVALFFLWRAVPTPDLGVLLLLLVLTRGFWGHALHRLDMYLHRSPQTHRFLAR-ASTFAPAGSWRSERRPRARIGDEVXXXXXXXXYTTRELQKLRAYVQRYPEATHRVRHGKMDLARFREGGEDFL 628
The following BLAST results are available for this feature:
BLAST of NO05G04270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28036.11.700e-17953.33hypothetical protein Naga_100008g74 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003432NSK003432Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04270.1NO05G04270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565002gene_3241Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g74gene2586Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04270.1NO05G04270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04270 ID=NO05G04270|Name=NO05G04270|organism=Nannochloropsis oceanica|type=gene|length=3075bp
CGCCAGGCGTCTGGTTCTTCTATGAATACGAGTGTGAACATGTTCACACT
CTTCGCACACTCACACACGCAAAAAAAGAGCTGCCCTCATCCCATTCTGA
CAGCCTCCCTGATTTATCCCTCTATCAATCCCACAGTTTGCAAGGCGCCC
ACTTCTTCGCCCTCCTCGTGTTCTTGTAGCCTCTCCTCATTACCACGTAT
ATTCACCACCATGAGGGCACGCCTCCTCCCCTGCCTCCTCCTTGCCCTCG
CCCTCCTTGCGGTTACAACCACTTCCGCCTCCCCTTTCGCAGAAGAATGC
CTTGACACCGATCTACAAGCGCCCCCTGAACGAGGCCCAAAGAAAGTCGA
CGTGGAAGCTCGCCCGCACACCCCCAATGTGGGAGATGTCATGGCCAACG
TCCACCGCAAAATGCCTGCGGCATTGCCCGGGTGGATGGGCAGGATCTGG
TCTAGCGTCAGCCATATCACTGCACCACACATCCGAAAACTAGTGCATTA
TGGCGGGGAAGTCTTGCGCCCAGGTGAGGACATGGCAGAACGTTGCAAGA
AGCGACGCAAGCCAATCGTGTCTGGTGCAGACACGGGCACGGGTGACAGC
AGCAGCAGCGGTTCGGACACGGGTCTGGATGCCTGTACCTTGTTAGATGT
GTCATGGTCCTTGGGCCAACAGCTGGGTAATCTAGGTAAGAATGCGTCGG
CTAAAACAGCATGGTGGCTCTCTCAGGAAGTGCCCCGTGTCGCACTCCCG
TTTCACCTCATGTGGGTTGAGCTTGCCGTGGAAGTTTACCCTGTGACCAG
AGCGGATGTCGCCTCTCTCATCCTCCACCAGCGTCCTCACTTCGTGGTGC
AGCTTTGTGATATTCTCTCAGAATACCTCGTCCGTGCGCTGCACAGCATT
CCCATGCTTGATTTTTTGATCAATGCCCGCTATGATCTTCTTTATATCCC
CGACGCTGCATGTCCCCTCACGCAAGTGGATGGCCTCATTTTTCGTGCCC
CCCTGACCGCCGAGGGCTTCTGCGAAATTCGTCCATGTGAGCACGAAAGC
TCCATCGCCGGACAAACGGCTGCTGGAGGCGTGAGCCCGTTTTGTGAGTG
TGATTTGACGAAGAAGCGCTGTCGCCTCCGGGCTCAATCGCTGAGGGATT
TCCAACTCTTGGTCGATGAGCCCTTAGCGAGCAAGACCTTTGACGCCCAG
GCAAGCACGAGTGTCGCGTGGGTGACGGTTCCTGACTGGTTCCCCCCCCG
GGTGCAAACGGCGCTCCAGGGACTGTTGCCTCTGTATGTGTTCAATTTCC
TGGTTGGGTTGCTCTTTTTGTGGTTTGCTGAACCTTTGTCGAGATCCACG
ATTTTCCATGTCTTTTTGTCGGCCATTCTAGGGCTTTTCTCTGGGTTATT
GCTGGCGGGCGTGGTGTTGAATCAGATGATAAGGACGGTGAAGAAGTTGC
AGCCTTTCTCAGGGTTGGCGACGCTGATGACGAGTGTGGTGGGCGTGGTG
GTGTATCACCGGTTTAGGGGGGGGGCGGAGATATTGCTGTTGCTGGCAGG
GGCTTTGAAGGGCATGTGGGGGGATCGGTGGGGTCAGGCGTACTTGGTGG
GCTCGGGCTTGCTCGGGTGGGGGCTAGCGTGGGGGCTGGGATGGTGGGAG
GAGACGGAGGAAGAATGCAGGGAGAAGAGAGGGGGATGGATCAAAGCTTG
GTTCAACGGCCAGAGGAATATAAGGGTAGGGTTGACGGTGCTGGGGTTGA
GTTTCTTGTGGAGGAGTGTGCCGACGCCTACAATGAGGGTGGTGGTGGTG
CTGCTGGTGCTGCTGAGGGAATGGTGGGGTTATGCCTTGCACCGGTTGCA
TATGTACCGGTATCGAAGTCCGGAGACGCATCGTTTTTTGGCGCGAGAGG
GGAAGGAGCGAGGGAGGGCTGGAGGGATGGGGCATAGGGCTAGGGGGGGG
GATGAGGATGATGATATAGAGGAGGAAGAGGAGGAGGGGGACGATTATAC
GACGCGGGCGTTGAGGGGATTGAGGACATATGTGCAGAAGAATCCGGAGA
GTACGCACAGGGTGAGGCATGGCCGGGGAGAGATGGAGAGATTCAAAGGA
GGGGGCCCTGATTATGTGAGAGGCGATGAGGAAGAGGAGGAGGAGGAGGA
GGAGGAGGGGAGGACAGGGAGGGGTTGTTGTGTGATGTAAAGAGGAGGAG
GAGAAGGAGAAGGAGGAGAAGGAGGAGAAGGAGAAGAAGAAGGAGAAAGG
GAACGAGGGGGAGGGAGGTGAAGAAAGACACTGCTTTCATGTGCTGCAGC
CACCGAAATAGTGAGCGCGCCGAGAGAATAAGAGGAGAAACGGAGAAGGG
GGGGGGAAGACAGAGGAGGATGACGGAGGAGAGATTTAGAGAGAGATTTA
GAGAGAGAGAGAGAAGATAAGATTGATTGATTCGTGTGAGTGAGAGTTTG
TGTGTGTGAGTGAGTGTATGTATATATATATGTGTGTGTGTATGTGTGTG
AGGGAGAGAGCGATAGAGAGAGAGAAAGTAAAGAGAAAGAGGAACTGAAA
GAGGCGGGAAAACCGCTTACAAAACACAGTAAGTGTGAATAAATGAGAGG
GTGAGGGTGCGCCTGTATTTGTGAGTGTGAGGGGATTCTAAGGCATGATA
TTTAATGTAAGGTAGTGCAAAGGGATAACATCAACTCTCAAGGAGGAGAC
GAAGAACACCCACCAACAAGCCTGATGTGATGGATTGAAAAATATAGATA
ATGCAATGACAATTACCACGAGACAATCCCTGAGTCGGCTGCATTTTTGA
AAGTACAAGCGAGTCTGCATGCCGCATTGCCTGGCCACTATGGAGCCAAA
GCAGGGTCTAAGGCATCGGAAACCGACGAGGCAACACACACACAAAAAAA
GAAGATAAAGCACCTACAGCGGCACCAGCCGACTGGACAAGAACAACACC
AACACACGAGAATAACAATAATAACAACAACAACAACAACAAAGATAACG
CCGAAAGGATTAAATGAAGAAGAATGAAAGATATCTGACATGACATACCC
AAACGTGGTGTAATCATAATAAGCC
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protein sequence of NO05G04270.1

>NO05G04270.1-protein ID=NO05G04270.1-protein|Name=NO05G04270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=723bp
MNTSVNMFTLFAHSHTQKKSCPHPILTASLIYPSINPTVCKAPTSSPSSC
SCSLSSLPRIFTTMRARLLPCLLLALALLAVTTTSASPFAEECLDTDLQA
PPERGPKKVDVEARPHTPNVGDVMANVHRKMPAALPGWMGRIWSSVSHIT
APHIRKLVHYGGEVLRPGEDMAERCKKRRKPIVSGADTGTGDSSSSGSDT
GLDACTLLDVSWSLGQQLGNLGKNASAKTAWWLSQEVPRVALPFHLMWVE
LAVEVYPVTRADVASLILHQRPHFVVQLCDILSEYLVRALHSIPMLDFLI
NARYDLLYIPDAACPLTQVDGLIFRAPLTAEGFCEIRPCEHESSIAGQTA
AGGVSPFCECDLTKKRCRLRAQSLRDFQLLVDEPLASKTFDAQASTSVAW
VTVPDWFPPRVQTALQGLLPLYVFNFLVGLLFLWFAEPLSRSTIFHVFLS
AILGLFSGLLLAGVVLNQMIRTVKKLQPFSGLATLMTSVVGVVVYHRFRG
GAEILLLLAGALKGMWGDRWGQAYLVGSGLLGWGLAWGLGWWEETEEECR
EKRGGWIKAWFNGQRNIRVGLTVLGLSFLWRSVPTPTMRVVVVLLVLLRE
WWGYALHRLHMYRYRSPETHRFLAREGKERGRAGGMGHRARGGDEDDDIE
EEEEEGDDYTTRALRGLRTYVQKNPESTHRVRHGRGEMERFKGGGPDYVR
GDEEEEEEEEEEGRTGRGCCVM*
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Synonyms
Publications