NO05G04190, NO05G04190 (gene) Nannochloropsis oceanica

Overview
NameNO05G04190
Unique NameNO05G04190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2540
Alignment locationchr5:1080846..1083385 +

Link to JBrowse

Properties
Property NameValue
DescriptionPpgpp synthetase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1080846..1083385 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015969guanosine tetraphosphate metabolic process
GO:0015969guanosine tetraphosphate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR003607HD/PDEase_dom
IPR007685RelA_SpoT
Homology
BLAST of NO05G04190 vs. NCBI_GenBank
Match: EWM27974.1 (ppgpp synthetase [Nannochloropsis gaditana])

HSP 1 Score: 854.0 bits (2205), Expect = 3.600e-244
Identity = 477/751 (63.52%), Postives = 540/751 (71.90%), Query Frame = 0
Query:   13 MTSITTRIKI--PRAAGREVGIRRLLLL----FHASFLCLFLSLSTVGAFAPLGLCSHRRRIAVTVGSSPSSTTPEAAAPDSVVQPTISWDMRVPRRAGLAPPTHSSSRDTRL-VKGPRRVPQPTNYGLWDLLIGPVAADFKLVGMPSELGPLANDVHRATEHLTRPERLAVLQALVRSYHAYRLRAPSPFVSQEATAAHSPT---EKAKAKSLTVGAYMEQNVAVIRLLGDSEVDGDTMVAALLCQAPLSVEAVEADFGAPVAGILKGWKAMLAVESQLEIKSLIHEYAHFLWGGQGDNLRNLLLVVGKDWRAVALRVAWKKVEMETRVFGTKKDEIDACWACLNVYASLAEAAGMSIIKNALEDRAFQFLMPQEHRRVVSELEARRGHYQKVLGQARREVLQALMEDPIFMSNVERVEVRGRIKSPYSTWKKMKRKGQ--REGASAGEGGRAVGFEGLYDMVALRVVCTPLYNEEKKDVYSHPSXXXXXXXXXXXXPLMLEARASKDRATCEYILHEVVHKLRPHYKSRVKDYIGEGKRKANGYQSLHTTLAYRIRGETTPVEVQIRTSEMHSVAEHGLAAHCLYKGDKNLADVIERGQQQMDAEMGEQGKEEQQPPRGFAGPGEFLTWCQRMLDKSHVIVFSPDGRLLKLDRGATLLDFLKASYVQRKVGRGMVTRSSSISSSVEHGVRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQLKKTKRSTQGMLLLNGRTAPALD 752
            MTS TTRIK+   R +G     R L LL     + + LCL L  S+V AFAP GL S R R AV VGS  S     A++  +    +   D   PR      P H+    +RL  K  RR   PT YGLWDL++GPVAADFKLVGMPSEL  LA +VH+AT+HLTRP RLAVLQALVRSYHAYR   P      E     S T   ++A AK+LTVGAYMEQNVAV RLLG SEVDGDTMVAALLC +PL++EAVE +FG  V  IL GWKAML VE QLEIKSLIHEYAHFLWGGQGDNLRNLLLVV KDWRAVALRVAWKKVEMET VFG KK+EIDACWACLNVYASLAEAAGMS IKNALE+RAF+FLMPQEHR+V++ LEA+R  YQKVLGQAR+EVLQAL+EDP+FMSNVERVEVRGRIKSPYS WKKMKRKG    EG   GEG   +G EG+YDMVALRVVCTPLY +++       S            P  L+ARA  D+  C+Y+L EVVHKLRPHYK RVKDY+GE  RKANGYQSLHTTLAYR+RGETTPVE+QIRTSEMHSVAEHGLAAHCLYKGD+ LA+VIERGQQQ + +M E+ ++   P RGFAGPGEFLTWCQ+MLDKSHVIVFSPDG+LLKL+RGATLLDF+KAS +Q K G     R +  +  VE G                                    V  +K+KRSTQGMLLLNG++APALD
Sbjct:    1 MTSSTTRIKVLRRRPSGGGSMCRALPLLRAVVGYVTLLCLLLEPSSVAAFAPRGLSSQRCRTAVPVGSGTSQDMVIASSVATTASSSTGAD--PPRGMKARLPEHTLPPSSRLAAKKSRRPKLPTMYGLWDLVVGPVAADFKLVGMPSELTALAIEVHKATDHLTRPARLAVLQALVRSYHAYRFHKPCQITLDETGRRPSTTTAPQRAVAKALTVGAYMEQNVAVARLLGASEVDGDTMVAALLCHSPLTLEAVENEFGKAVGTILAGWKAMLGVEGQLEIKSLIHEYAHFLWGGQGDNLRNLLLVVAKDWRAVALRVAWKKVEMETTVFGAKKEEIDACWACLNVYASLAEAAGMSQIKNALEERAFKFLMPQEHRKVMTALEAKRDRYQKVLGQARKEVLQALLEDPVFMSNVERVEVRGRIKSPYSVWKKMKRKGMLVEEGEGGGEGS-GMGLEGVYDMVALRVVCTPLYADKEAS-----SASSATLPVSPPTPATLQARADLDKQMCDYVLREVVHKLRPHYKGRVKDYVGEENRKANGYQSLHTTLAYRLRGETTPVEIQIRTSEMHSVAEHGLAAHCLYKGDRTLAEVIERGQQQAEQQMQEE-EDAIGPQRGFAGPGEFLTWCQKMLDKSHVIVFSPDGKLLKLNRGATLLDFVKASCLQPKAGTAQGKRGTR-NKRVEEG--------RGCGRLHPQGLWRDDSAHEEHGGYQTVPVSRRKSKRSTQGMLLLNGQSAPALD 733          
BLAST of NO05G04190 vs. NCBI_GenBank
Match: WP_013704776.1 (bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Marinithermus hydrothermalis] >AEB12731.1 (p)ppGpp synthetase I, SpoT/RelA [Marinithermus hydrothermalis DSM 14884])

HSP 1 Score: 181.0 bits (458), Expect = 1.400e-41
Identity = 139/461 (30.15%), Postives = 231/461 (50.11%), Query Frame = 0
Query:  221 YMEQNVAVIRLLGDSEVDGDTMVAALLC----QAPLSVEAVEADFGAPVAGILKGWKAMLAVESQLEIKSLIHEYAHFLWGGQGDNLRNLLLVVGKDWRAVALRVAWKKVEMETRVFGTKKDEIDACWACLNVYASLAEAAGMSIIKNALEDRAFQFLMPQEHRRVVSELEARRGHYQKVLGQARREVLQALMEDPIFMSNVERVEVRGRIKSPYSTWKKMKRKGQREGASAGEGGRAVGFEGLYDMVALRVVCTPLYNEEKKDVYSHPSXXXXXXXXXXXXPLMLEARASKDRATCEYILHEVVHKLRPHYKSRVKDYIGEGKRKANGYQSLHTTLAYRIRGETTPVEVQIRTSEMHSVAEHGLAAHCLYKGDKNLADVIERGQQQMDAEMGEQGKEEQQPPRGFAGPGEFLTWCQRMLDKSHVIVFSPDGRLLKLDRGATLLDFLKASYVQRKVGRGMV 678
            ++   VAV  +L + ++D DT++A LL        ++++A+EA FG  V  I++G       E+++   S + + A  +   Q +NLR + + + +D R + +++A +   M T  F   + +       L ++A LA   G+  IK  LED AF++L P+E   +   L   R  +Q ++ +A+  + +AL +D +    V+   V GR K  YS WKKM+R G+               E +YD++ALRV+  P  + + +                       EA+A +++  C +++  +VH L      RVKDYI     K NGYQSLHTT+   I  +  P+EVQIRT EMH +AE+G+AAH LYK      + ++R    + A         Q+  + F+   EF+    + L    V VF+P G+++ L +GAT +DF  A ++  +VG  M+
Sbjct:   52 FITHPVAVAGILAELKMDEDTLIAGLLHDTVEDTDVTLDAIEARFGPTVRRIVEG-------ETKV---SKLPKIAESIEDEQAENLRQMFIAMTEDVRIIIVKLADRLHNMRTLEFMPPEKQQRISRETLEIFAPLAHRLGIGQIKWELEDLAFRYLHPEECAALEVRLSHHRAEHQAIVERAKAALEEALAKDYVLKLAVQEYTVTGRTKHLYSIWKKMERDGKT-------------LEQIYDLLALRVILDPRPSSDPE-----------------------EAKA-REKQVCYHVI-GLVHALWQPIPGRVKDYI--AMPKPNGYQSLHTTV---ITWQGMPLEVQIRTREMHRIAEYGIAAHWLYKEGLTNPEEVKRRVSWLRA--------IQEWQQEFSSSREFVEAVTKDLLGGRVFVFTPKGQIINLPKGATPVDF--AYHIHTEVGHSMI 449          
BLAST of NO05G04190 vs. NCBI_GenBank
Match: WP_013457017.1 (bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Oceanithermus profundus] >ADR35847.1 (p)ppGpp synthetase I, SpoT/RelA [Oceanithermus profundus DSM 14977])

HSP 1 Score: 180.3 bits (456), Expect = 2.300e-41
Identity = 145/462 (31.39%), Postives = 230/462 (49.78%), Query Frame = 0
Query:  221 YMEQNVAVIRLLGDSEVDGDTMVAALLCQAPLSVEAVEAD-----FGAPVAGILKGWKAMLAVESQLEIKSLIHEYAHFLWGGQGDNLRNLLLVVGKDWRAVALRVAWKKVEMETRVFGTKKDEIDACWACLNVYASLAEAAGMSIIKNALEDRAFQFLMPQEHRRVVSELEARRGHYQKVLGQARREVLQALMEDPIFMSNVERVEVRGRIKSPYSTWKKMKRKGQREGASAGEGGRAVGFEGLYDMVALRVVCTPLYNEEKKDVYSHPSXXXXXXXXXXXXPLMLEARASKDRATCEYILHEVVHKLRPHYKSRVKDYIGEGKRKANGYQSLHTTLAYRIRGETTPVEVQIRTSEMHSVAEHGLAAHCLYKGDKNLADVIERGQQQMDAEMGEQGKEEQQPPRGFAGPGEFLTWCQRMLDKSHVIVFSPDGRLLKLDRGATLLDFLKASYVQRKVGRGMV 678
            Y+   VAV  +L + ++D D+++A LL      VE+V  +     FG  VA I++G       E+++   S + + A  +   Q +NLR + + + +D R + +++A +   M T  F   + +       L ++A +A   G+  IK  LED AF++L P+E+  +V  L      +++V+  A+  +  AL  D +   +V+   V GR K  +S WKKM+R+ +               E +YD++ALRV+  P      K V S                   E  AS+++  C ++L  +VH L P    RVKDYI +   K NGYQSLHTT+   I     P+EVQIRT EMH VAE+G+AAH LYK  + L D  +  ++    E+       Q+  R F    +F+   Q  L    V VF+P GR++ L +G+T +DF  A ++  +VG  M+
Sbjct:   52 YITHPVAVTEILAELQMDPDSLIAGLLHDTVEDVESVSFETIRQRFGEDVARIVEG-------ETKV---SKLSKMATSVEDQQAENLRQMFIAMTRDLRIIIVKLADRTHNMRTLEFMPPEKQRRISKETLEIFAPMAHRLGIGQIKLELEDLAFRYLHPEEYAALVERLAHHSQAHREVVDNAKGALEHALENDYVLGLSVDGFSVSGRTKHLFSIWKKMQREEKT-------------LEQIYDLLALRVILDP------KPVASP------------------EEAASREKQVCYHVL-GLVHALWPPIPGRVKDYIAQ--PKPNGYQSLHTTV---ITPGGLPLEVQIRTREMHRVAEYGVAAHWLYK--EGLTDPNQLKRRVKWIEL------LQEWQRDFTTSRDFVEAVQHDLLSGRVFVFTPKGRVIDLPKGSTPVDF--AYHIHTEVGHRMI 450          
BLAST of NO05G04190 vs. NCBI_GenBank
Match: WP_038062559.1 (bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus filiformis] >KGQ22466.2 GTP pyrophosphokinase [Thermus filiformis])

HSP 1 Score: 177.9 bits (450), Expect = 1.200e-40
Identity = 142/464 (30.60%), Postives = 223/464 (48.06%), Query Frame = 0
Query:  220 AYMEQNVAVIRLLGDSEVDGDTMVAALL------CQAPLSVEAVEADFGAPVAGILKGWKAMLAVESQLEIKSLIHEYAHFLWGGQGDNLRNLLLVVGKDWRAVALRVAWKKVEMETRVFGTKKDEIDACWACLNVYASLAEAAGMSIIKNALEDRAFQFLMPQEHRRVVSELEARRGHYQKVLGQARREVLQALMEDPIFMSNVERVEVRGRIKSPYSTWKKMKRKGQREGASAGEGGRAVGFEGLYDMVALRVVCTPLYNEEKKDVYSHPSXXXXXXXXXXXXPLMLEARASKDRATCEYILHEVVHKLRPHYKSRVKDYIGEGKRKANGYQSLHTTLAYRIRGETTPVEVQIRTSEMHSVAEHGLAAHCLYKGDKNLADVIERGQQQMDAEMGEQGKEEQQPPRGFAGPGEFLTWCQRMLDKSHVIVFSPDGRLLKLDRGATLLDFLKASYVQRKVGRGMV 678
            AY+   VAV  +L +  +D +T++A LL      C  P   E +E  FG  V  I++G      V    ++ SL  E        + ++LR + + + +D R + +++A +   M T     +  +       L +YA LA   GM  IK  LED +F++L P+ +R ++  L   +   ++V+ ++   + + L +D +  + +E +E+ GR K  YS WKKM+R+ +               E +YD+ A+RVV  P   ++                         E +A +++  C ++L  +VH L      RVKDYI     K NGYQSLHTT+   I  E  P+EVQIRT EMH VAE+G+AAH LYK      + I R    +        K  Q+  + F+   EF+    R L    V VF+P GR++ L +GAT +DF  A ++  +VG  MV
Sbjct:   47 AYITHPVAVAEILAELRMDPETLMAGLLHDTLEDCGVP--AEVLEGRFGPQVRRIVEG---ETKVSKLYKLASLEGEER------RAEDLRQMFIAMAEDVRIIIVKLADRLHNMRTLEAMPEAKQKRIAQETLEIYAPLAHRLGMGQIKWELEDLSFRYLHPEAYRTLLENLREIQATREEVVRRSIERLREVLAKDALLQAQLEGMEITGRTKHLYSIWKKMERENK-------------ALEQIYDLQAIRVVLRPKPAQDP------------------------EVQALREKQVCYHVL-GLVHALWQPIPGRVKDYI--AVPKPNGYQSLHTTV---IALEGLPLEVQIRTEEMHRVAEYGIAAHWLYKEGLTDPEEIRRRVGWL--------KNIQEWQQEFSSSREFVEAVMRDLLGGRVFVFTPKGRIINLPKGATPVDF--AYHIHTEVGHHMV 446          
BLAST of NO05G04190 vs. NCBI_GenBank
Match: WP_027892253.1 (bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Meiothermus chliarophilus])

HSP 1 Score: 177.2 bits (448), Expect = 2.000e-40
Identity = 142/467 (30.41%), Postives = 223/467 (47.75%), Query Frame = 0
Query:  221 YMEQNVAVIRLLGDSEVDGDTMVAALLC----QAPLSVEAVEADFGAPVAGILKG------WKAMLAVESQLEIKSLIHEYAHFLWGGQGDNLRNLLLVVGKDWRAVALRVAWKKVEMETRVFGTKKDEIDACWACLNVYASLAEAAGMSIIKNALEDRAFQFLMPQEHRRVVSELEARRGHYQKVLGQARREVLQALMEDPIFMSNVERVEVRGRIKSPYSTWKKMKRKGQREGASAGEGGRAVGFEGLYDMVALRVVCTPLYNEEKKDVYSHPSXXXXXXXXXXXXPLMLEARASKDRATCEYILHEVVHKLRPHYKSRVKDYIGEGKRKANGYQSLHTTLAYRIRGETTPVEVQIRTSEMHSVAEHGLAAHCLYKGDKNLADVIERGQQQMDAEMGEQGKEEQQPPRGFAGPGEFLTWCQRMLDKSHVIVFSPDGRLLKLDRGATLLDFLKASYVQRKVGRGMV 678
            ++   VAV  +L + ++D DT++A LL           EA+EA FGA V  I++G         +  V S+ E+K    ++A        ++LR + + + +D R + +++A +   M T  F     +       L +YA LA   G+  +K  LED +F++L P+ + ++   L++ R   +  + +AR  +   L  D I  S V   EV GR K  YS WKKM+R+G+                 +YD++ALRV+  P   ++                         E +A +++  C ++L  +VH L      RVKDYI     K NGYQSLHTT+   I     P+EVQIRT EMH VAE G+AAH LYK  + L D  E  ++       ++ ++E      F+   EF+    R L    V VF+P G+++ L  G+  +DF  A ++  +VG  MV
Sbjct:   53 FITHPVAVAEILAELKLDADTLMAGLLHDTVEDTEARPEAIEARFGAAVRKIVEGETKVSKLYKLAHVASEGEVKHAEEKHA--------EDLRQMFIAMAEDVRIIIVKLADRLHNMRTLEFMPPHKQARIARETLEIYAPLAHRLGIGQLKWELEDLSFRYLNPEGYAQLTERLKSHRDEREAAVDKARESLEAVLQRDSILRSLVRGFEVTGRTKHLYSIWKKMEREGKE-------------LAQIYDLLALRVILEPRLTDD------------------------AEEKAMREKQVCYHVL-GLVHALWQPIPGRVKDYI--AVPKPNGYQSLHTTV---IAVNGLPLEVQIRTREMHRVAEFGIAAHWLYK--EGLTDPEEVRRRVSWLHSIQEWQQE------FSSSREFVEVVTRDLLGGRVFVFTPKGKVINLPSGSGPVDF--AYHIHTEVGHHMV 458          
BLAST of NO05G04190 vs. NCBI_GenBank
Match: WP_027883090.1 (bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Meiothermus rufus])

HSP 1 Score: 176.8 bits (447), Expect = 2.600e-40
Identity = 137/465 (29.46%), Postives = 221/465 (47.53%), Query Frame = 0
Query:  221 YMEQNVAVIRLLGDSEVDGDTMVAALLC----QAPLSVEAVEADFGAPVAGILKG----WKAMLAVESQLEIKSLIHEYAHFLWGGQGDNLRNLLLVVGKDWRAVALRVAWKKVEMETRVFGTKKDEIDACWACLNVYASLAEAAGMSIIKNALEDRAFQFLMPQEHRRVVSELEARRGHYQKVLGQARREVLQALMEDPIFMSNVERVEVRGRIKSPYSTWKKMKRKGQREGASAGEGGRAVGFEGLYDMVALRVVCTPLYNEEKKDVYSHPSXXXXXXXXXXXXPLMLEARASKDRATCEYILHEVVHKLRPHYKSRVKDYIGEGKRKANGYQSLHTTLAYRIRGETTPVEVQIRTSEMHSVAEHGLAAHCLYKGDKNLADVIERGQQQMDAEMGEQGKEEQQPPRGFAGPGEFLTWCQRMLDKSHVIVFSPDGRLLKLDRGATLLDFLKASYVQRKVGRGMV 678
            Y+   VAV R+L +  +D +T++A LL        +  E +E  FG  V  I++G     K      +  E K     +A        ++LR + + + +D R + +++A +   + T  F   + +       L +YA LA   G+  +K  LED +F +L P+ ++ + + L++ R   +  +  AR +++QAL  D I   +++R EV GR K  YS WKKM+R+G+               E +YD++ALRV+  P    +                         E  A + +  C ++L  +VH +      RVKDYI     K NGYQSLHTT+   I     P+EVQIRT EMH VAE G+AAH LYK      + ++R    +        K  Q+  + ++   +F+    R L    V VF+P G+++ L +GA+ +DF  A ++  +VG  MV
Sbjct:   45 YITHPVAVARILAELGLDAETLMAGLLHDTIEDTEVRPEELEERFGPAVRKIVEGETKVSKLYKLAHAAAEDKPAEERHA--------EDLRQMFIAMAEDVRIIVVKLADRLHNLRTLEFMPPEKQRRIARETLEIYAPLAHRLGIGQVKLELEDLSFCYLEPERYQDLEARLKSHRAEREAAVQDAREKLIQALQRDFILRQSIQRFEVTGRTKHLYSIWKKMQREGK-------------ALEQIYDLLALRVILEPRQGSDP------------------------EENALRGKQVCYHVL-GLVHAIWQPIPGRVKDYI--AVPKPNGYQSLHTTV---ISVNGLPLEVQIRTKEMHQVAEFGIAAHWLYKEGVTDPEELKRRVGWL--------KNIQEWQQEYSSSRDFVEAVTRELLGGRVFVFTPKGKIINLPKGASPVDF--AYHIHTEVGHHMV 448          
BLAST of NO05G04190 vs. NCBI_GenBank
Match: WP_003047072.1 (bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus aquaticus] >EED10007.1 (p)ppGpp synthetase I, SpoT/RelA [Thermus aquaticus Y51MC23] >ALJ90012.1 GTP pyrophosphokinase (pppGpp) synthetase II [Thermus aquaticus Y51MC23])

HSP 1 Score: 176.0 bits (445), Expect = 4.400e-40
Identity = 141/463 (30.45%), Postives = 232/463 (50.11%), Query Frame = 0
Query:  221 YMEQNVAVIRLLGDSEVDGDTMVAALLC----QAPLSVEAVEADFGAPVAGILKGWKAMLAVESQLEIKSLIHEYAHFLWGGQ--GDNLRNLLLVVGKDWRAVALRVAWKKVEMETRVFGTKKDEIDACWACLNVYASLAEAAGMSIIKNALEDRAFQFLMPQEHRRVVSELEARRGHYQKVLGQARREVLQALMEDPIFMSNVERVEVRGRIKSPYSTWKKMKRKGQREGASAGEGGRAVGFEGLYDMVALRVVCTPLYNEEKKDVYSHPSXXXXXXXXXXXXPLMLEARASKDRATCEYILHEVVHKLRPHYKSRVKDYIGEGKRKANGYQSLHTTLAYRIRGETTPVEVQIRTSEMHSVAEHGLAAHCLYKGDKNLADVIERGQQQMDAEMGEQGKEEQQPPRGFAGPGEFLTWCQRMLDKSHVIVFSPDGRLLKLDRGATLLDFLKASYVQRKVGRGMV 678
            Y+   VAV  +L    +D DT+ A LL        ++ E +E  FG  V  I++G       E+++   S ++++A+ L G +   ++LR + + + +D R + +++A +   + T     +  +       L +YA LA   GM  IK  LED +F++L P+ ++ +++ L+  +   ++++ +A   + +AL +D +  S ++  EV GR K  YS WKKM+R+G+               E +YD++A+RV+  P            PS                EA+  +++  C ++L  +VH L      RVKDYI     K NGYQSLHTT+   I  E  P+EVQIRT EMH +AE+G+AAH LYK      + ++R    +        K  Q+  + F+   EF+    R L    V VF+P GR++ L +GAT +DF  A ++  +VG  MV
Sbjct:   48 YITHPVAVAEILASLRMDADTVAAGLLHDTMEDCGVAGEELERRFGPAVRRIVEG-------ETKV---SKLYKFAN-LEGEEKRAEDLRQMFIAMAEDVRIIIVKLADRLHNLRTLEHMPEGKQKRIAQETLEIYAPLAHRLGMGQIKWELEDLSFRYLHPEAYQALLARLQETQEARERMVKRAMEVLEEALKQDALLQSQLQGFEVTGRPKHLYSIWKKMEREGK-------------ALEQIYDLLAVRVILDP-----------KPSPTE-------------EAKGLREKQVCYHVL-GLVHALWQPIPGRVKDYI--AVPKPNGYQSLHTTV---IALEGLPLEVQIRTREMHRIAEYGIAAHWLYKEGLTDPEEVKRRVSWL--------KNIQEWQQEFSSSREFVEAVTRDLLGGRVFVFTPKGRIINLPKGATPVDF--AYHIHTEVGHHMV 446          
BLAST of NO05G04190 vs. NCBI_GenBank
Match: WP_053767443.1 (bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus aquaticus] >KOX89664.1 GTP pyrophosphokinase [Thermus aquaticus])

HSP 1 Score: 176.0 bits (445), Expect = 4.400e-40
Identity = 141/463 (30.45%), Postives = 232/463 (50.11%), Query Frame = 0
Query:  221 YMEQNVAVIRLLGDSEVDGDTMVAALLC----QAPLSVEAVEADFGAPVAGILKGWKAMLAVESQLEIKSLIHEYAHFLWGGQ--GDNLRNLLLVVGKDWRAVALRVAWKKVEMETRVFGTKKDEIDACWACLNVYASLAEAAGMSIIKNALEDRAFQFLMPQEHRRVVSELEARRGHYQKVLGQARREVLQALMEDPIFMSNVERVEVRGRIKSPYSTWKKMKRKGQREGASAGEGGRAVGFEGLYDMVALRVVCTPLYNEEKKDVYSHPSXXXXXXXXXXXXPLMLEARASKDRATCEYILHEVVHKLRPHYKSRVKDYIGEGKRKANGYQSLHTTLAYRIRGETTPVEVQIRTSEMHSVAEHGLAAHCLYKGDKNLADVIERGQQQMDAEMGEQGKEEQQPPRGFAGPGEFLTWCQRMLDKSHVIVFSPDGRLLKLDRGATLLDFLKASYVQRKVGRGMV 678
            Y+   VAV  +L    +D DT+ A LL        ++ E +E  FG  V  I++G       E+++   S ++++A+ L G +   ++LR + + + +D R + +++A +   + T     +  +       L +YA LA   GM  IK  LED +F++L P+ ++ +++ L+  +   ++++ +A   + +AL +D +  S ++  EV GR K  YS WKKM+R+G+               E +YD++A+RV+  P            PS                EA+  +++  C ++L  +VH L      RVKDYI     K NGYQSLHTT+   I  E  P+EVQIRT EMH +AE+G+AAH LYK      + ++R    +        K  Q+  + F+   EF+    R L    V VF+P GR++ L +GAT +DF  A ++  +VG  MV
Sbjct:   48 YITHPVAVAEILASLRMDADTVAAGLLHDTMEDCGVAGEELERRFGPAVRRIVEG-------ETKV---SKLYKFAN-LEGEEKRAEDLRQMFIAMAEDVRIIIVKLADRLHNLRTLEHMPEGKQKRIAQETLEIYAPLAHRLGMGQIKWELEDLSFRYLHPEAYQALLARLQETQEARERMVKRAMEVLEEALKQDALLQSQLQGFEVTGRPKHLYSIWKKMEREGK-------------ALEQIYDLLAVRVILDP-----------KPSPTE-------------EAKGLREKQVCYHVL-GLVHALWQPIPGRVKDYI--AVPKPNGYQSLHTTV---IALEGLPLEVQIRTREMHRIAEYGIAAHWLYKEGLTDPEEVKRRVSWL--------KNIQEWQQEFSSSREFVEAVTRDLLGGRVFVFTPKGRIINLPKGATPVDF--AYHIHTEVGHHMV 446          
BLAST of NO05G04190 vs. NCBI_GenBank
Match: WP_016328339.1 (bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus oshimai] >AFV75139.1 (p)ppGpp synthetase, RelA/SpoT family [Thermus oshimai JL-2])

HSP 1 Score: 175.6 bits (444), Expect = 5.700e-40
Identity = 144/481 (29.94%), Postives = 234/481 (48.65%), Query Frame = 0
Query:  201 ATAAHSPTEKAKAKSLTVGAYMEQNVAVIRLLGDSEVDGDTMVAALLC----QAPLSVEAVEADFGAPVAGILKGWKAMLAVESQLEIKSLIHEYAHFLWGGQGDNLRNLLLVVGKDWRAVALRVAWKKVEMETRVFGTKKDEIDACWACLNVYASLAEAAGMSIIKNALEDRAFQFLMPQEHRRVVSELEARRGHYQKVLGQARREVLQALMEDPIFMSNVERVEVRGRIKSPYSTWKKMKRKGQREGASAGEGGRAVGFEGLYDMVALRVVCTPLYNEEKKDVYSHPSXXXXXXXXXXXXPLMLEARASKDRATCEYILHEVVHKLRPHYKSRVKDYIGEGKRKANGYQSLHTTLAYRIRGETTPVEVQIRTSEMHSVAEHGLAAHCLYKGDKNLADVIERGQQQMDAEMGEQGKEEQQPPRGFAGPGEFLTWCQRMLDKSHVIVFSPDGRLLKLDRGATLLDFLKASYVQRKVGRGMV 678
            A AAH+   +   +      Y+   VAV  +L    +D +T++A LL        ++ E +E  FGA V  I++G      V    ++ +L  E        + ++LR + + + +D R + +++A +   + T      + +       L +YA LA   GM  IK  LED +F++L P+ ++ ++  L+  +   +K++ +A   + +AL +D +  + ++  EV GR K  YS WKKM+R+G+               E +YD++A+RV+  P            PS                EAR+ +++  C ++L  +VH L      RVKDYI     K NGYQSLHTT+   I  E  P+EVQIRT EMH VAE+G+AAH LYK      + ++R    +        K  Q+  + F+   EF+    + L    V VF+P GR++ L +GAT +DF  A ++  +VG  MV
Sbjct:   39 AEAAHAGQRRRSGE-----PYITHPVAVAEILASLRMDAETVMAGLLHDVVEDCGVAPEELERRFGAGVRRIVEG---ETKVSKLYKMANLEGEER------RAEDLRQMFIAMAEDVRIIIVKLADRLHNLRTLEHMPPEKQRRIAQETLEIYAPLAHRLGMGQIKWELEDLSFRYLHPEAYQSLLERLKEGQEAREKLVERAMARLKEALEKDELLQAQIQGFEVTGRPKHLYSIWKKMEREGK-------------ALEQIYDLLAVRVILDP-----------KPSATE-------------EARSLREKQVCYHVL-GLVHALWQPIPGRVKDYI--AVPKPNGYQSLHTTV---IALEGLPLEVQIRTREMHKVAEYGIAAHWLYKEGLTDPEEVKRRVSWL--------KSIQEWQQEFSSSREFVEAVTKDLLGGRVFVFTPKGRIINLPKGATPVDF--AYHIHTEVGHHMV 452          
BLAST of NO05G04190 vs. NCBI_GenBank
Match: KHG64853.1 (GTP pyrophosphokinase [Thermus sp. 2.9])

HSP 1 Score: 175.6 bits (444), Expect = 5.700e-40
Identity = 139/461 (30.15%), Postives = 224/461 (48.59%), Query Frame = 0
Query:  221 YMEQNVAVIRLLGDSEVDGDTMVAALLC----QAPLSVEAVEADFGAPVAGILKGWKAMLAVESQLEIKSLIHEYAHFLWGGQGDNLRNLLLVVGKDWRAVALRVAWKKVEMETRVFGTKKDEIDACWACLNVYASLAEAAGMSIIKNALEDRAFQFLMPQEHRRVVSELEARRGHYQKVLGQARREVLQALMEDPIFMSNVERVEVRGRIKSPYSTWKKMKRKGQREGASAGEGGRAVGFEGLYDMVALRVVCTPLYNEEKKDVYSHPSXXXXXXXXXXXXPLMLEARASKDRATCEYILHEVVHKLRPHYKSRVKDYIGEGKRKANGYQSLHTTLAYRIRGETTPVEVQIRTSEMHSVAEHGLAAHCLYKGDKNLADVIERGQQQMDAEMGEQGKEEQQPPRGFAGPGEFLTWCQRMLDKSHVIVFSPDGRLLKLDRGATLLDFLKASYVQRKVGRGMV 678
            Y+   VAV  +L    +D DT+ A LL        ++ E +E  FG  V  I++G      V    ++ +L  E        + ++LR + + + +D R + +++A +   + T  F   + +       L +YA LA   GM  +K  LED +F++L P+ ++ ++S ++  +   ++++ +A   + +AL  D +  + ++  EV GR K  YS WKKM+R+ +               E +YD++A+RV+  P            PS                E RA +++  C ++L  +VH L      RVKDYI     K NGYQSLHTT+   I  E  P+EVQIRT EMH +AE+G+AAH LYK      + I+R    +        K  Q+  + F+   EF+    R L    V VF+P GR++ L +GAT +DF  A ++  +VG  MV
Sbjct:   49 YITHPVAVAEILASLRMDADTVAAGLLHDTLEDCGVAAEELERRFGPAVRRIVEG---ETKVSKLYKLANLEGEEK------RAEDLRQMFIAMAEDVRIIIVKLADRLHNLRTLEFMPPEKQKRIAQETLEIYAPLAHRLGMGQLKWELEDLSFRYLHPEAYQALLSRIQETQEARERLVKKAMAALEEALKRDELLQAQLQGFEVTGRPKHLYSIWKKMEREKK-------------ALEQIYDLLAVRVILDP-----------KPSPTE-------------EGRALREKQVCYHVL-GLVHALWQPIPGRVKDYI--AVPKPNGYQSLHTTV---IALEGLPLEVQIRTREMHRIAEYGIAAHWLYKEGLTDPEEIKRRVSWL--------KSIQEWQQEFSSSREFVEAVTRDLLGGRVFVFTPKGRIINLPKGATPVDF--AYHIHTEVGHHMV 447          
The following BLAST results are available for this feature:
BLAST of NO05G04190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27974.13.600e-24463.52ppgpp synthetase [Nannochloropsis gaditana][more]
WP_013704776.11.400e-4130.15bifunctional (p)ppGpp synthetase/guanosine-3',5'-b... [more]
WP_013457017.12.300e-4131.39bifunctional (p)ppGpp synthetase/guanosine-3',5'-b... [more]
WP_038062559.11.200e-4030.60bifunctional (p)ppGpp synthetase/guanosine-3',5'-b... [more]
WP_027892253.12.000e-4030.41bifunctional (p)ppGpp synthetase/guanosine-3',5'-b... [more]
WP_027883090.12.600e-4029.46bifunctional (p)ppGpp synthetase/guanosine-3',5'-b... [more]
WP_003047072.14.400e-4030.45bifunctional (p)ppGpp synthetase/guanosine-3',5'-b... [more]
WP_053767443.14.400e-4030.45bifunctional (p)ppGpp synthetase/guanosine-3',5'-b... [more]
WP_016328339.15.700e-4029.94bifunctional (p)ppGpp synthetase/guanosine-3',5'-b... [more]
KHG64853.15.700e-4030.15GTP pyrophosphokinase [Thermus sp. 2.9][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003438NSK003438Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04190.1NO05G04190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585005gene_3231Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g66gene2578Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04190.1NO05G04190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04190 ID=NO05G04190|Name=NO05G04190|organism=Nannochloropsis oceanica|type=gene|length=2540bp
ATGCAGCGAGCGAGCTGCAACGAACCCGgtaggactgcccgcaaaagctc
agacgcgggcgtcaagactctaagggtctgcttttgactatacccgccac
ctttatccacatgcaatatcactccatgtcttccttttgtcgtgttacca
agccatctgcacaaggcaggcgggcattttattgaacctaaggaaattca
ttcgctgcattttctgtttatgtaccgcggccctttctcatgcttatcct
cttcctccgaacacaaacatgcacagTGCATATAATGACGTCGATCACAA
CGAGGATAAAAATTCCGCGGGCAGCGGGAAGAGAAGTGGGCATCAGGAGG
CTGCTCCTTCTTTTCCATGCCAGCTTTCTCTGCCTATTCCTGAGCCTAAG
CACCGTGGGAGCATTTGCCCCCTTGGGGCTTTGTTCGCATCGACGCCGCA
TTGCCGTAACAGTGGGCTCTAGCCCTAGCAGCACCACCCCAGAGGCCGCT
GCACCTGATAGCGTCGTCCAGCCGACAATCTCTTGGGACATGAGGGTTCC
GCGTCGCGCGGGCCTCGCCCCTCCTACTCATTCTTCTTCCCGTGACACCA
GATTAGTCAAAGGACCACGTCGCGTGCCGCAACCCACAAATTACGGTTTG
TGGGACCTATTGATCGGACCAGTGGCTGCTGACTTTAAGCTTGTAGGGAT
GCCTTCAGAGCTCGGGCCTTTGGCAAACGACGTGCATCGTGCCACAGAGC
ATCTGACCCGCCCAGAACGCCTGGCAGTACTTCAGGCATTGGTGCGTTCC
TACCACGCGTACCGTCTCCGAGCGCCCTCTCCTTTTGTGTCCCAAGAGGC
CACAGCAGCCCACTCGCCCACCGAGAAAGCCAAAGCCAAGTCATTGACTG
TAGGGGCATACATGGAGCAAAACGTTGCGGTGATCCGTTTGTTGGGTGAT
TCGGAAGTGGATGGAGATACTATGGTTGCTGCTCTTTTGTGCCAGGCTCC
TCTGTCAGTAGAGGCCGTTGAGGCTGATTTTGGAGCGCCGGTGGCCGGGA
TCTTAAAAGGGTGGAAGGCCATGTTGGCGGTGGAGAGTCAGTTGGAAATT
AAGAGTTTGATTCATGAGTATGCGCACTTTTTGTGGGGGGGTCAGGGGGA
TAATCTGCGTAATTTGCTGTTGGTGGTGGGTAAGGATTGGAGGGCAGTTG
CCTTGAGGGTTGCATGGAAGAAAGTAGAGATGGAGACGAGGGTATTTGGG
ACGAAGAAGGATGAAATTGACGCCTGTTGGGCTTGTTTGAATGTATACGC
CTCTTTGGCAGAAGCGGCGGGGATGAGCATCATTAAGAATGCGTTAGAGG
ATCGGGCGTTTCAGTTCTTGATGCCCCAGGAACACAGGCGGGTGGTGTCA
GAGCTTGAGGCGAGACGAGGACACTACCAGAAGGTTTTGGGGCAGGCGAG
GAGGGAGGTGCTCCAAGCACTGATGGAGGATCCGATCTTTATGAGTAATG
TGGAGAGGGTGGAGGTGAGGGGGAGGATCAAGAGCCCCTATAGCACTTGG
AAGAAGATGAAGAGGAAGGGACAGAGGGAGGGGGCGAGCGCTGGGGAGGG
AGGTCGGGCGGTCGGATTCGAGGGATTGTATGACATGGTGGCTTTGCGCG
TGGTGTGCACGCCGCTGTACAACGAAGAGAAAAAGGACGTGTATTCTCAT
CCTTCTTCCTCCTCCTCGCCGTCTTCCTCGTCTCCACCTACTCCGTTGAT
GCTCGAAGCGCGGGCCAGCAAGGACAGGGCGACCTGTGAATATATCCTCC
ATGAAGTCGTTCACAAGCTACGTCCGCATTACAAATCCCGTGTCAAGGAC
TATATCGGCGAGGGCAAACGCAAAGCGAATGGGTATCAATCCCTCCATAC
AACCCTGGCTTACCGCATTCGAGGAGAAACGACGCCGGTGGAGGTTCAGA
TCCGAACGAGCGAAATGCACTCTGTGGCAGAGCATGGGTTAGCCGCCCAT
TGCCTGTACAAGGGAGATAAGAATTTGGCGGACGTGATTGAACGAGGGCA
GCAACAGATGGATGCGGAGATGGGGGAGCAAGGGAAGGAGGAACAGCAGC
CGCCGAGGGGGTTTGCTGGGCCGGGGGAATTTCTGACATGGTGTCAACGG
ATGCTGGATAAGAGTCATGTGATTGTCTTTTCGCCTGATGGACGACTGTT
AAAGCTAGACCGGGGGGCGACATTGCTTGATTTCTTGAAGGCATCTTATG
TGCAGCGAAAAGTGGGGAGAGGAATGGTGACGCGGAGCAGCAGCATCAGC
AGCAGTGTTGAGCACGGTGTGAGAAATGGGGAAGAAAAGCACCATCATCA
CAAGCTGCAGCCGCAACGGTTTCGGGAGGAACAGATGGAAGAAGCGGCAG
AGGAACGAAGGAGGAAGAAGGCGTATGTACAGCTGAAAAAGACAAAGCGG
AGCACGCAGGGTATGCTGTTGCTGAACGGACGCACGGCCCCGGCACTGGA
TCAGGTCTTGGTGACAGGGGACGTCATCTCATACATGTAA
back to top

protein sequence of NO05G04190.1

>NO05G04190.1-protein ID=NO05G04190.1-protein|Name=NO05G04190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=764bp
MQRASCNEPVHIMTSITTRIKIPRAAGREVGIRRLLLLFHASFLCLFLSL
STVGAFAPLGLCSHRRRIAVTVGSSPSSTTPEAAAPDSVVQPTISWDMRV
PRRAGLAPPTHSSSRDTRLVKGPRRVPQPTNYGLWDLLIGPVAADFKLVG
MPSELGPLANDVHRATEHLTRPERLAVLQALVRSYHAYRLRAPSPFVSQE
ATAAHSPTEKAKAKSLTVGAYMEQNVAVIRLLGDSEVDGDTMVAALLCQA
PLSVEAVEADFGAPVAGILKGWKAMLAVESQLEIKSLIHEYAHFLWGGQG
DNLRNLLLVVGKDWRAVALRVAWKKVEMETRVFGTKKDEIDACWACLNVY
ASLAEAAGMSIIKNALEDRAFQFLMPQEHRRVVSELEARRGHYQKVLGQA
RREVLQALMEDPIFMSNVERVEVRGRIKSPYSTWKKMKRKGQREGASAGE
GGRAVGFEGLYDMVALRVVCTPLYNEEKKDVYSHPSSSSSPSSSSPPTPL
MLEARASKDRATCEYILHEVVHKLRPHYKSRVKDYIGEGKRKANGYQSLH
TTLAYRIRGETTPVEVQIRTSEMHSVAEHGLAAHCLYKGDKNLADVIERG
QQQMDAEMGEQGKEEQQPPRGFAGPGEFLTWCQRMLDKSHVIVFSPDGRL
LKLDRGATLLDFLKASYVQRKVGRGMVTRSSSISSSVEHGVRNGEEKHHH
HKLQPQRFREEQMEEAAEERRRKKAYVQLKKTKRSTQGMLLLNGRTAPAL
DQVLVTGDVISYM*
back to top
Synonyms
Publications