NO05G03960, NO05G03960 (gene) Nannochloropsis oceanica

Overview
NameNO05G03960
Unique NameNO05G03960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1920
Alignment locationchr5:1023531..1025450 -

Link to JBrowse

Properties
Property NameValue
DescriptionRna recognition motif-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1023531..1025450 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005515protein binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR008984SMAD_FHA_domain
IPR037238YbiA-like_sf
IPR012816CHP02464_YbiA
IPR000504RRM_dom
IPR000253FHA_dom
Homology
BLAST of NO05G03960 vs. NCBI_GenBank
Match: EWM27988.1 (rna recognition motif-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 629.8 bits (1623), Expect = 9.300e-177
Identity = 313/416 (75.24%), Postives = 358/416 (86.06%), Query Frame = 0
Query:    7 VDRRVFDPDKKGSVRILDDPGAAARRLVCSRITAFTGEHEFLSTLSKSRVVLPGEGVIEGDKFVVYPTVEHALQAAKSTDSEYRLAILVCKDPLEAKRRGAKAPGWDKEGWKTKSLAIMEALLRDKFRRHKGLRAQLLATGTKNLIYENEHNDQFWGICKGGXXXXXXXXXXXXHLGLLLEKVRADEKEGLLAILFWAKQIFRALPDAKVHVDMSVMRDGAPLPEADLSFDRKSIITFGKLAENDVPVAHPSTSRFHALIVASEPYGPLLIDLEAANGTFLDERRLEPFKGALL-TPTSIAALGTSTRRYTFTFDLFADAKRSLAMYEILDNPLKLAAARPELGVFVNNLPKDVTEEMVLNFFSECGTVLSVSLPRHKTTKEPRGFAIVLFGTEAAVVAALKLDRDPMGGSEVRVK 422
            VDRRVFDPDKK SVR+LDD  A ARRLV SRITAFTGE++FLSTLSKSRVVLPGEGV+EG+ F  YPTVEHALQA+KS+D  YR +IL  KD LEAKRRGAKAP  DK+ WK KSL +MEALLRDKFRRHKGLR QL+ TGTK L+YENEHNDQFWG CKG             HLG LLE+VRADEKEGLL IL WAKQ+F A  D+KV +D+SV R+G PLPEADL+ +RK+I+TFGKLAENDVPVAHPSTSRFHA++V S+PYGPLL+DLEAANG+FLDERRLEPFKGA L +  S  ALGTS+RRYTFTFDL A AKRSLA+YE+L++PLKLAAARPELGVF+NNLPKDVTEEMV +F ++CGTVLSV++PRH+T++EPRGFAIV+FGTEAAVV+ALKLDRD MGGSEVRV+
Sbjct:    5 VDRRVFDPDKKASVRVLDDSAATARRLVESRITAFTGEYDFLSTLSKSRVVLPGEGVMEGEGFQAYPTVEHALQASKSSDPTYRQSILSSKDALEAKRRGAKAPNVDKQAWKLKSLVVMEALLRDKFRRHKGLRQQLMNTGTKQLVYENEHNDQFWGTCKG---------KGHNHLGQLLERVRADEKEGLLGILLWAKQVFNATSDSKVRLDVSVTREGHPLPEADLTLERKAIVTFGKLAENDVPVAHPSTSRFHAMVVVSQPYGPLLVDLEAANGSFLDERRLEPFKGAALHSGVSEVALGTSSRRYTFTFDLAAAAKRSLALYEVLEDPLKLAAARPELGVFMNNLPKDVTEEMVRDFVADCGTVLSVAVPRHRTSQEPRGFAIVMFGTEAAVVSALKLDRDLMGGSEVRVR 411          
BLAST of NO05G03960 vs. NCBI_GenBank
Match: XP_005856309.1 (rna recognition motif-containing protein, partial [Nannochloropsis gaditana CCMP526] >EKU20050.1 rna recognition motif-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 323.2 bits (827), Expect = 1.900e-84
Identity = 162/230 (70.43%), Postives = 181/230 (78.70%), Query Frame = 0
Query:    1 MAGLDGVDRRVFDPDKKGSVRILDDPGAAARRLVCSRITAFTGEHEFLSTLSKSRVVLPGEGVIEGDKFVVYPTVEHALQAAKSTDSEYRLAILVCKDPLEAKRRGAKAPGWDKEGWKTKSLAIMEALLRDKFRRHKGLRAQLLATGTKNLIYENEHNDQFWGICKGGXXXXXXXXXXXXHLGLLLEKVRADEKEGLLAILFWAKQIFRALPDAKVHVDMSVMRDGAPLP 231
            +A    VDRRVFDPDKK SVR+LDD  A ARRLV SRITAFTGE++FLSTLSKSRVVLPGEGV+EG+ F  YPTVEHALQA+KS+D  YR +IL  KD LEAKRRGAKAP  DK+ WK KSL +MEALLRDKFRRHKGLR QL+ TGTK L+YENEHNDQFWG CKG             HLG LLE+VRADEKEGLL IL WAKQ+F A  D+KV +D+SV R+G PLP
Sbjct:   19 LAMASAVDRRVFDPDKKASVRVLDDSAATARRLVESRITAFTGEYDFLSTLSKSRVVLPGEGVMEGEGFQAYPTVEHALQASKSSDPTYRQSILSSKDALEAKRRGAKAPNVDKQAWKLKSLVVMEALLRDKFRRHKGLRQQLMNTGTKQLVYENEHNDQFWGTCKG---------KGHNHLGQLLERVRADEKEGLLGILLWAKQVFNATSDSKVRLDVSVTREGHPLP 239          
BLAST of NO05G03960 vs. NCBI_GenBank
Match: CBN76756.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 233.0 bits (593), Expect = 2.500e-57
Identity = 156/394 (39.59%), Postives = 212/394 (53.81%), Query Frame = 0
Query:   38 ITAFTGEHEFLSTLSKSRVVLPGEGVIEGDKFVVYPTVEHALQAAKSTDSEYRLAILVCKDPLEAKRRGAKAPGWDKEGWKTKSLAIMEALLRDKFRRHKGLRAQLLATGTKNLIYENEHNDQFWGICKGGXXXXXXXXXXXXHLGLLLEKVRADEKEGLLAILFWAKQIFRALPDAKVHVDMSVMRDGAPLPEADLSFDRKSIITFGKLAENDVPVAHPSTSRFHALIVASEPYGPLLIDLEAANGTFLDERRLEPFKGALLTPTSIAALGT------STRRYTFT---FDLFADAKRSLAMYEILDNPLKLAA-ARPELGVFVNNLPKDVTEEMVLNFFSECGTVLSVSLPRHKTTKEPRGFAIVLFGTEAAVVAALKLDRDPMGGSEVRVK 422
            I  F G+ E LS   K  V L G+          YP+VEHALQA+K+ D E + AI   K+ +EAK+    A    K  W+  S  I EAL+RDKFRR+   R  L+ TG   L+Y N H+D+FWG+C G              LG LLE+VRAD   G     + A +   ALP   V V  +V + G  +  AD SF+ K +I  GKLA+N+V +AHPS SR HAL+V    +G  L+DL A+NG+F+D RRL P+      P  I A G       S R YT T    DL  +AK+   +Y  + +P+  AA   P+  V+V NL   VTE+ +  FF+ECG + SV +P+ K T + RG A V F   + V+ AL L  D + G  V+++
Sbjct:   24 IRQFEGDFECLSNTYKCPVSLRGDP-------EPYPSVEHALQASKTDDFELKAAIRQAKNAIEAKKIARVAK--PKPDWRGSSEKIAEALVRDKFRRNAKAREVLVGTGRVKLVYTNTHDDRFWGVCTG---------KGENKLGKLLERVRADALAGKDTEAWCATRFQLALP-LDVMVGFAVSKAGKIV--ADPSFEGKPVIRMGKLADNEVVMAHPSVSRSHALLVVDRCFGAFLVDLGASNGSFVDGRRLSPY-----VPEPIKAGGAGLTFAKSKRTYTLTQVETDL-REAKKG-RLYASMSDPMASAAQPDPDSTVYVGNLDPSVTEDDIREFFAECGAIASVRIPQDKETGKMRGIAFVAFAKHSGVLQALTLHMDDLKGQSVKIR 389          
BLAST of NO05G03960 vs. NCBI_GenBank
Match: XP_005856308.1 (rna binding motif protein 34, partial [Nannochloropsis gaditana CCMP526] >EKU20049.1 rna binding motif protein 34, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 223.4 bits (568), Expect = 2.000e-54
Identity = 112/143 (78.32%), Postives = 131/143 (91.61%), Query Frame = 0
Query:  280 EAANGTFLDERRLEPFKGALL-TPTSIAALGTSTRRYTFTFDLFADAKRSLAMYEILDNPLKLAAARPELGVFVNNLPKDVTEEMVLNFFSECGTVLSVSLPRHKTTKEPRGFAIVLFGTEAAVVAALKLDRDPMGGSEVRVK 422
            EAANG+FLDERRLEPFKGA L +  S  ALGTS+RRYTFTFDL A AKRSLA+YE+L++PLKLAAARPELGVF+NNLPKDVTEEMV +F ++CGTVLSV++PRH+T++EPRGFAIV+FGTEAAVV+ALKLDRD MGG EVRV+
Sbjct:    1 EAANGSFLDERRLEPFKGAALHSGVSEVALGTSSRRYTFTFDLAAAAKRSLALYEVLEDPLKLAAARPELGVFMNNLPKDVTEEMVRDFVADCGTVLSVAVPRHRTSQEPRGFAIVMFGTEAAVVSALKLDRDLMGGLEVRVR 143          
BLAST of NO05G03960 vs. NCBI_GenBank
Match: KRX10356.1 (SMAD/FHA domain [Pseudocohnilembus persalinus])

HSP 1 Score: 150.6 bits (379), Expect = 1.700e-32
Identity = 113/359 (31.48%), Postives = 169/359 (47.08%), Query Frame = 0
Query:   70 VVYPTVEHALQAAKSTDSEYRLAILVCKDPLEAKRRGAKAPGWDKEGWKTKSLAIMEALLRDKFRRHKGLRAQLLATGTKNLI--YENE-HNDQFWGICKGGXXXXXXXXXXXXHLGLLLEKVRADEKEGLLAILFWAKQIFRALPDAKV--HVDMSVMRDGAPLPEADLSFDRKSIITFGKLAENDVPVAHPSTSRFHALIVASEPYGPLLIDLEAANGTFLDERRLEPFKGALLTPTSIAALGTSTRRYTFTFDLF----------ADAKRSLAMYEILDNP-LKLAAARPELG------VFVNNLPKDVTEEMVLNFFSECGTVLSVSLPRHKTTKEPRGFAIVLFGTEAAVVAAL 407
            +++P++  A QAA+S   E R AI     P E      K    D E W+ + L +ME+LLRDKFRR+K L+ +L+ TG + LI  Y+ E  ++ +WG   G             HLG LLE +R D + G L +  W    F    D  +   + ++V +DG  +    L+ ++K+   FG    NDV +AHP  SR HA I+        LIDL +  GT+L++  +E + G  L    + +   STR+Y    D             D KR L + E LDNP +  A  R  LG      ++V NLP   +   + + F + G+V  V    +   K  +G A+V + T      AL
Sbjct:   57 LLFPSISSAFQAARSQSQEEREAIASVDSPEELWDLAVKIE--DPEDWEQRKLKVMESLLRDKFRRNKDLKERLMETGNRQLINTYDEETESNLYWGHING---------KGQNHLGKLLENIRNDIQRG-LDLHKWIFFTFSLERDLNLVPLIKLNVFKDGKQI--ETLNLEKKNFFIFGTQKTNDVILAHPMISRQHACILCDNEQNIKLIDLGSKGGTYLNDELIEEYTGVDLEFDDVISFSVSTRKYYVEIDYTQVYNSLMKQERDLKRELMLLEKLDNPNISKAELREVLGFSVEDTIYVGNLPFSASISDIKDHFKQYGSVKKVKFLENSIGKS-KGVALVTYKTPQQAKTAL 400          
BLAST of NO05G03960 vs. NCBI_GenBank
Match: CDW73079.1 (fha domain containing protein [Stylonychia lemnae])

HSP 1 Score: 144.8 bits (364), Expect = 9.100e-31
Identity = 118/403 (29.28%), Postives = 179/403 (44.42%), Query Frame = 0
Query:   37 RITAFTGEHEFLSTLSKSRVVLPGEGVIEGDKFVVYPTVEHALQAAKSTDSEYRLAILVCKDPLEAKRRGAKAPGWDKEGWKTKSLAIMEALLRDKFRRHKGLRAQLLATGTK---NLIYENEHNDQFWGICKGGXXXXXXXXXXXXHLGLLLEKVRA---DEKEGLLAILFWAKQIFRALPDAK--VHVDMSVMRDGAPLPEADLSFDRKSIITFGKLAEN-DVPVAHPSTSRFHALIVASEPYGPLLIDLEAANGTFLDERRLE---PFKGALLTPTSIAALGTSTRRYTFTFDLF----------ADAKRSLAMYEILDN--PLKLAAARPELG------VFVNNLPKDVTEEMVLNFFSECGTVLSVSLPRHKTTKEPRGFAIVLFGTEAAVVAALKLD 410
            +I  FTG  EF+     S V   GE          Y T  HA  AAK  D   R  I   K P   +         + EGW  K L +ME ++RDKFRR + +R +L AT  +   N + +    + +WG+                 LG +LE+VR    DE E    +  W +  F  +   K    +++ V +DG  +    ++ + K    FG      DV + HPS SR HA  +  +  G +LIDL +   T LD++ LE   P +    +   +   G STR Y  + D             + +R + + E LDN   + +   +  LG      ++V+NLP  VTE+ ++  F++CG +LS+ +P +K TK+ RGFA +    E A   AL  D
Sbjct:   55 KIEGFTGYFEFMRPDFPSPVYYEGE---------TYSTAAHAYNAAKLIDPNMRRRIQ--KAPTLQEMYNVARTIEEPEGWTHKKLKVMERIMRDKFRRSRDMRERLAATQNREIINFLPDKSEENLYWGM---------VGKQGQNQLGKILERVRQSVHDESE----MEQWMQNNFNLVEGRKKLPSINLEVFKDGQLI--ESITLENKPYYVFGAHPHKCDVVLKHPSMSRVHAAFLIDQDLGVVLIDLMSKAKTKLDDQTLEGCIPHQVKANSKQKV-IFGLSTRVYQISIDYSKMQRAVEIEKKNLEREMRLLEKLDNVDNIDMDTLKSTLGLIKQDTIYVSNLPYSVTEQELMELFNDCGKILSIRMPENKQTKQNRGFAFITMADEKAARRALNYD 430          
BLAST of NO05G03960 vs. NCBI_GenBank
Match: EJY77076.1 (FHA domain containing protein (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 142.9 bits (359), Expect = 3.400e-30
Identity = 120/416 (28.85%), Postives = 188/416 (45.19%), Query Frame = 0
Query:   37 RITAFTGEHEFLSTLSKSRVVLPGEGVIEGDKFVVYPTVEHALQAAKSTDSEYRLAILVCKDPLEAKRRGAKAPGWDKEGWKTKSLAIMEALLRDKFRRHKGLRAQLLATGTKNLI-YENEHNDQ--FWGICKGGXXXXXXXXXXXXHLGLLLEKVRA---DEKEGLLAILFWAKQIFRALPDAK--VHVDMSVMRDGAPLPEADLSFDRKSIITFGKLAEN-DVPVAHPSTSRFHALIVASEPYGPLLIDLEAANGTFLDERRLEPFKGALLTPTSIAA-----LGTSTRRYTFTFDLF----------ADAKRSLAMYEILD--NPLKLAAARPELG------VFVNNLPKDVTEEMVLNFFSECGTVLSVSLPRHKTTKEPRGFAIVLFGTEAAVVAALKLDRDPMGGSEVRV 421
            +I  F+G  EF+      R   P +   EG+   +Y T  HA  AAK  D + R  I   K P   +         + EGW  K L IME + RDKFRR + LR +L AT  + +I +  + ND+  FWG+                +LG +LE+VR    DE E    +  W +  F  +   K    +++ V +DG  +    ++ + K    FG   +  DV + HPS SR H+  +  E  G +++DL +  GT LD+   +P +G +       A      G STR Y  + D             + +R + + E LD  + + +   +  LG      ++V+NLP  VT++ + + F +CG +LS+ +P +  TK+ RGFA +    E A   AL  D        +RV
Sbjct:   67 KIEGFSGYFEFM------RPDFPAQVYFEGE---MYSTAAHAYNAAKIPDKQLRRRIQ--KAPTLQEMYNVARTIVEPEGWSNKKLKIMEKIQRDKFRRSRDLRERLAATQNREIINHLTDKNDENLFWGMVN---------KQGQNNLGKILERVRQSVYDESE----MEQWMQNNFNLVEGRKRIPTINLEVFKDGQLI--ESITLENKPYYIFGAHPQKCDVVLKHPSISRVHSAFLIDEDLGVVIMDLMSKAGTKLDD---QPLEGCVPQQVKAKADQKVVFGLSTRVYQISIDYSKMQRAVENEKRNLEREMRLLEKLDDVDNMDVDTLKQTLGLIKQDTIYVSNLPFSVTDKDLQDLFGDCGKILSIRMPLNNQTKQGRGFAFITMADEKAARRALNYDGHKFYDRRLRV 453          
BLAST of NO05G03960 vs. NCBI_GenBank
Match: EJY77299.1 (FHA domain containing protein (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 141.7 bits (356), Expect = 7.700e-30
Identity = 121/418 (28.95%), Postives = 188/418 (44.98%), Query Frame = 0
Query:   37 RITAFTGEHEFLSTLSKSRVVLPGEGVIEGDKFVVYPTVEHALQAAKSTDSEYRLAILVCKDPLEAKRRGAKAPGWDKEGWKTKSLAIMEALLRDKFRRHKGLRAQLLATGTKNLI-YENEHNDQ--FWGICKGGXXXXXXXXXXXXHLGLLLEKVRA---DEKEGLLAILFWAKQIFRALPDAK--VHVDMSVMRDGAPLPEADLSFDRKSIITFGKLAEN-DVPVAHPSTSRFHALIVASEPYGPLLIDLEAANGTFLDERRLEPFKGALLTPTSIAA-------LGTSTRRYTFTFDLF----------ADAKRSLAMYEILD--NPLKLAAARPELG------VFVNNLPKDVTEEMVLNFFSECGTVLSVSLPRHKTTKEPRGFAIVLFGTEAAVVAALKLDRDPMGGSEVRV 421
            +I  F+G  EF+      R   P +   EG+   +Y T  HA  AAK  D + R  I   K P   +         + EGW  K L IME + RDKFRR + LR +L AT  + +I +  + ND+  FWG+                +LG +LE+VR    DE E    +  W +  F  +   K    +++ V +DG  +    ++ + K    FG   +  DV + HPS SR H+  +  E  G +++DL +  GT LD++ LE        P  + A        G STR Y  + D             + +R + + E LD  + + +   +  LG      ++V+NLP  VT++ + + F +CG +LS+ +P +  TK+ RGFA +    E A   AL  D        +RV
Sbjct:   67 KIEGFSGYFEFM------RPDFPAQVYYEGE---MYSTAAHAYNAAKIPDKQLRRRIQ--KAPTLQEMYNVARTIVEPEGWSNKKLKIMEKIQRDKFRRSRDLRERLAATQNREIINHLTDKNDENLFWGMVN---------KQGQNNLGKILERVRQSVYDESE----MEQWMQNNFNLVEGRKRIPTINLEVFKDGQLI--ESITLENKPYYIFGAHPQKCDVVLKHPSISRVHSAFLIDEDLGVVIMDLMSKAGTKLDDQILEG-----CVPQQVKAKADQKVVFGLSTRVYQISIDYSKMQRAVENEKRNLEREMRLLEKLDDVDNMDVDTLKQTLGLIKQDTIYVSNLPFSVTDKDLQDLFGDCGKILSIRMPLNNQTKQGRGFAFITMADEKAARRALNYDGHKFYDRRLRV 453          
BLAST of NO05G03960 vs. NCBI_GenBank
Match: XP_005776468.1 (hypothetical protein EMIHUDRAFT_427170 [Emiliania huxleyi CCMP1516] >EOD24039.1 hypothetical protein EMIHUDRAFT_427170 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 129.4 bits (324), Expect = 3.900e-26
Identity = 120/390 (30.77%), Postives = 172/390 (44.10%), Query Frame = 0
Query:   38 ITAFTGEHEFLSTLSKSRVVLPGEGVIEGDKFVVYPTVEHALQAAKS-TDSEYRLAILVCKDPLEAKRRGAKAPGWDKEGWKTKSLAIMEALLRDKFRRHKGLRAQLLATGTKNLIYENEHNDQFWGICKGGXXXXXXXXXXXXHLGLLLEKVRADEKEGLLAILFWAKQIF--RALPDAKVHVDMSVMRDGAPLPEADLSFDRKSIITFGKLAENDVPVAHPSTS---RFHALIVASEPYGPLLIDLEAANGTFLDERRLEPFKGALLTPTSIAALGTSTRRYTFTFDLFADAKRSLAMYEILDNPLKLAAARPE-LGVFVNNLPKDVTEEMVLNFFSECGTVLSVSLPRHKTTKEPRGFAIVLFGTEAAVVAALKLDRDPMGGSEVRV 421
            IT FTG  E L+    + VV  G         V Y +VEHA QAAK+  D++   AI   K P  A   G K P    + W+ + L +MEALLRDKF R   LR +LL T  +NLI  N   + FWG+  G              LG  L K+R + +EG   +  W    F      D    + + V + G  +    L   R +++  GK +  DV + HPS S      A +V        ++ +  A+G       L   +G        A L     R      L ADA    +++ +L  P       P+   VFV NLP D TEE V +FF+E G  +SV +P ++ T    G A V F +   V AA +L+ + + G  +++
Sbjct:   46 ITDFTGRWEALANWFPAAVVHRG---------VRYASVEHAFQAAKAGADADAARAIREAKTPQAAHALGQKVP--LPQDWERRKLGLMEALLRDKFVRDAALRERLLRTDQQNLIATNSWGETFWGVSGG---------RGSNALGKALMKLRGEAREG-SDVTAWLSSSFDLARADDPHDGLSLEVHKGGTVVETVALPAGRAALL-LGKHSACDVQLEHPSVSVPLEDGARLVCGGSSRTHVLRVSKADG-------LGKLQG------QHAGLTAQLSR------LEADAADEASLFGLL--PADRRGPDPDATTVFVGNLPFDATEEDVRDFFAEVGAAVSVRMPLNRETGGASGIAFVEFSSPELVAAAARLNGEDLMGRSLKI 392          
BLAST of NO05G03960 vs. NCBI_GenBank
Match: XP_004032421.1 (hypothetical protein IMG5_122670 [Ichthyophthirius multifiliis] >EGR30834.1 hypothetical protein IMG5_122670 [Ichthyophthirius multifiliis])

HSP 1 Score: 128.6 bits (322), Expect = 6.700e-26
Identity = 105/365 (28.77%), Postives = 158/365 (43.29%), Query Frame = 0
Query:   70 VVYPTVEHALQAAKSTDSEYRLAILVCKDPLEAKRRGAKAPGWDKEGWKTKSLAIMEALLRDKFRRHKGLRAQL---------------LATGTKNLIYENEH---NDQFWGICKGGXXXXXXXXXXXXHLGLLLEKVRADEKEGLLAILFWAKQIFRALPDAKV--HVDMSVMRDGAPLPEADLSFDRKSIITFGKLAENDVPVAHPSTSRFHALIVASEPYGPLLIDLEAANGTFLDERRLEPFKGALLTPTSIAALGTSTRRYTFTFDLFADAKRSLAMYEIL-----------------DNPL-KLAAARPELGVFVNNLPKDVTEEMVLNFFSECGTVLSVSLPRHKTTKEPRGFAIVLF 397
            ++YP+V  A QA++ST+ + RL I     P E      +    D + W  K L IME LLRDKFRR K LR +L                    + LIY  E+   +D FWG+CKG             + G+LLE +R D  E    +  W    FR   D K+   + + V ++G  +    L    +S    G+    +V + HP+ SR HA  V  E    L+ID+++ +GTFL+   +E      L          STR Y    D +++A + L   +I                  D  L KL        +FV+NLP + ++  +  +FS+   V  V +P  K T   + FA ++F
Sbjct:   38 ILYPSVSAAFQASRSTNQQIRLQISQIDSPEELWEIAQEIE--DPQDWGEKRLKIMEILLRDKFRRSKELRERLRXXXXXXXXXXXXXXXYISDRQLIYSYENETPSDMFWGVCKG---------RGYNNAGILLETIRKDISEN-QDMKKWMLTKFRIEQDVKLLPIITLKVSKNGQQIETIILK--SRSYYYLGQYKTCNVLLTHPTVSRLHACFVCQETQKILIIDMDSKSGTFLNSEIIESLHDKQLQNGDQLKFALSTRTYEIFID-YSEANKELQRRKIQLQKDIQQLRKVNQKNIPDEELQKLLGFSINDTLFVSNLPNNTSQTKLKKYFSQYAKVKQVKIPFDKKTGRQKNFAYIIF 387          
The following BLAST results are available for this feature:
BLAST of NO05G03960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27988.19.300e-17775.24rna recognition motif-containing protein [Nannochl... [more]
XP_005856309.11.900e-8470.43rna recognition motif-containing protein, partial ... [more]
CBN76756.12.500e-5739.59conserved unknown protein [Ectocarpus siliculosus][more]
XP_005856308.12.000e-5478.32rna binding motif protein 34, partial [Nannochloro... [more]
KRX10356.11.700e-3231.48SMAD/FHA domain [Pseudocohnilembus persalinus][more]
CDW73079.19.100e-3129.28fha domain containing protein [Stylonychia lemnae][more]
EJY77076.13.400e-3028.85FHA domain containing protein (macronuclear) [Oxyt... [more]
EJY77299.17.700e-3028.95FHA domain containing protein (macronuclear) [Oxyt... [more]
XP_005776468.13.900e-2630.77hypothetical protein EMIHUDRAFT_427170 [Emiliania ... [more]
XP_004032421.16.700e-2628.77hypothetical protein IMG5_122670 [Ichthyophthirius... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003464NSK003464Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03960.1NO05G03960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100008g42gene2556Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03960.1NO05G03960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03960 ID=NO05G03960|Name=NO05G03960|organism=Nannochloropsis oceanica|type=gene|length=1920bp
ATGGCGGGGCTCGATGGCGTGGACCGCCGGGTCTTTGACCCCGACAAGAA
GGGTTCCGTGCGCATTTTGGACGACCCAGGCGCAGCGGCGAGACGGCTCG
TCTGCTCGCGCATTACGGCATTTACAGGAGAGCATGAGTTCCTCAGCACC
CTCAGCAAGTCCCGCGTGGTGCTGCCAGGGGAGGGCGTGATCGAAGGCGA
CAAATTCGTGGTATATCCAACCGTGGAGCACGCGCTACAAGCAGCCAAGA
GCACCGATTCCGAGTACCGACTTGCTATTCTGGTGTGTAAAGACCCGTTG
GAGGCGAAGCGGCGGGGGGCCAAGGCACCGGGATGGGACAAGGAGGGATG
GAAGACGAAGTCCCTTGCCATAATGGAAGCCTTGCTCCGCGATAAATTCC
GACGTCACAAAGGGCTACGGGCTCAACTTCTCGCCACGGGCACCAAGAAT
TTGATTTATGAAAACGAGCACAACGATCAATTTTGGGGAATCTGCAAAGG
TGGAGGAAAAGGAGGGGGCGGCAGCGGCGGGGGGCATAATCACCTCGGGT
TACTCCTGGAGAAAGTCCGGGCCGACGAAAAAGAAGGTCTCCTAGCCATC
CTTTTCTGGGCAAAGCAAATCTTCCGCGCCCTGCCCGACGCCAAGGTCCA
CGTCGACATGAGTGTCATGAGGGATGGGGCCCCTCTACCCGAAGCCGACC
TCAGCTTCGACAGGAAGTCCATCATCACCTTTGGCAAGCTGGCGGAGAAT
GACGTCCCTGTCGCTCACCCCAGCACCAGTCGTTTCCATGCGCTCATCGT
CGCTTCTGAGCCTTATGGCCCGTTGCTCATTGACCTTGAGGCAGCCAACG
GCACCTTTCTTGATGAGAGACGACTCGAGCCCTTTAAGGGGGCCTTGCTC
ACCCCTACCTCCATCGCCGCCCTCGGAACCTCCACCCGTCGGTACACCTT
TACGTTCGACCTCTTTGCGGACGCAAAACGTTCCTTAGCCATGTACGAGA
TATTGGATAACCCTCTCAAGCTCGCGGCGGCACGACCCGAACTCGGCGTT
TTCGTCAACAACCTCCCCAAAGACGTTACGGAGGAAATGGTGCTGAATTT
TTTCTCCGAATGTGGGACTGTGCTATCTGTGTCGTTGCCAAGGCATAAAA
CGACCAAGGAGCCACGCGGATTCGCGATTGTGTTGTTCGGAACGGAGGCG
GCGGTAGTTGCAGCACTAAAATTGGACAGGGACCCGATGGGGGGGTCGGA
GGTGAGAGTGAAGAGACGGAAGAAGGAGGAGGGAGGAGCAGGAGGAGCAG
GAAGAGGGAAGGTGAGTGAAGACGGAGGGAAGCGGAAGGAGGAGCAGAGG
AGGAATGTGGATCATTATTGCCCTTCTTCGTCGTCTTCGTCTTTGGGTGG
TGGTGGGGAGTTGAAGACGACGGCTGCAGCTGCTGTTGCTGCTGGCACAG
CTGGTGCGGATAGAACTCGAGCTACGAACAAGCATATGCACCACAGGGAC
GAGGAGTATCAAGGGAGGGAGAGGGGGAGGCAAAGGGAGGAAGGTGAGCC
TTATCGTCGCTCACGAAGTAGAAGCTTGAGCTCAAGCGGGAGAGGGAGGA
GAAAGCGAGAGGAGGAGGAGGAAGGAGGGACGGTAGAAGGGGGGCGATGG
GATGCCCGACGAAGACATTCTAGCCGCAGTAGAAGCAGGGAGGGAGGTTA
CCCGCGCTTGTCTCCACGGCGTGAGATGGAGCGAGATGATCGGAGTAGGG
AGAGGGGTAGGGAGAGGGAGAGGGACAGAGGCTACGACCGAGGCGGGACA
GGAAAAATGAGAAGAGACAACTGCAGCAGCAGCAGCAGGAGTAGAGATAG
GAGCCGAAGGTCAGATCGGCGGAGCCCCACCCCTCCGCGGAGACGGGCAG
AGAGGTCTCGTTCGCCTTGA
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protein sequence of NO05G03960.1

>NO05G03960.1-protein ID=NO05G03960.1-protein|Name=NO05G03960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=640bp
MAGLDGVDRRVFDPDKKGSVRILDDPGAAARRLVCSRITAFTGEHEFLST
LSKSRVVLPGEGVIEGDKFVVYPTVEHALQAAKSTDSEYRLAILVCKDPL
EAKRRGAKAPGWDKEGWKTKSLAIMEALLRDKFRRHKGLRAQLLATGTKN
LIYENEHNDQFWGICKGGGKGGGGSGGGHNHLGLLLEKVRADEKEGLLAI
LFWAKQIFRALPDAKVHVDMSVMRDGAPLPEADLSFDRKSIITFGKLAEN
DVPVAHPSTSRFHALIVASEPYGPLLIDLEAANGTFLDERRLEPFKGALL
TPTSIAALGTSTRRYTFTFDLFADAKRSLAMYEILDNPLKLAAARPELGV
FVNNLPKDVTEEMVLNFFSECGTVLSVSLPRHKTTKEPRGFAIVLFGTEA
AVVAALKLDRDPMGGSEVRVKRRKKEEGGAGGAGRGKVSEDGGKRKEEQR
RNVDHYCPSSSSSSLGGGGELKTTAAAAVAAGTAGADRTRATNKHMHHRD
EEYQGRERGRQREEGEPYRRSRSRSLSSSGRGRRKREEEEEGGTVEGGRW
DARRRHSSRSRSREGGYPRLSPRREMERDDRSRERGRERERDRGYDRGGT
GKMRRDNCSSSSRSRDRSRRSDRRSPTPPRRRAERSRSP*
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Synonyms
Publications