NO05G03860, NO05G03860 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G03860 vs. NCBI_GenBank
Match: OQS07130.1 (ubiquinone biosynthesis protein COQ9 [Thraustotheca clavata]) HSP 1 Score: 156.4 bits (394), Expect = 1.800e-34 Identity = 95/225 (42.22%), Postives = 134/225 (59.56%), Query Frame = 0 Query: 73 AATFQDPRQEILAAALPLVAKHGWTEETLAAGAASLGFPAVAHGMFGRGAIELVEYAM----AQIDAAWVAE-LEARQDELASLPSSRERLERAIRWRLRLIAPYLAQWPQALALGLSPHNLETTARGLAEVADELCVTTEKDEGMDLTNWYAHRATVCSVYVATELFFLTDYSEDYQDTWAFLERRLRDVEALSHAPTNVQEGVLAFQTAASAMASAVASLAQP 293 +A+ +DP IL+ AL V GW+ E+L GA GFP++AHGMF RG IELVE+ M Q+ AE L+ D +A+ +RL+R ++ RL+L+APYL WPQA+ALG P N TT R LA++AD++ D D+ +WY RA + +Y ATELF LTD SE++++TW FL+RR+ + AL P NV + ++ S A+LA P Sbjct: 348 SASVEDPSVTILSNALRHVQSTGWSIESLGQGARDAGFPSIAHGMFPRGPIELVEFFMDDWQRQVQVKLAAEPLDENNDFVAT-----DRLKRGVQIRLQLLAPYLHVWPQAMALGALPQNAPTTMRKLAQMADDIWFFA-GDRSTDI-SWYTKRAVLTGIYTATELFMLTDTSENFEETWKFLDRRVEEAIALGDLPHNVGDIAGMMSIGLQSLLSTAAALAGP 565
BLAST of NO05G03860 vs. NCBI_GenBank
Match: POM73859.1 (RpsU-divergently transcribed protein [Phytophthora palmivora var. palmivora]) HSP 1 Score: 156.4 bits (394), Expect = 1.800e-34 Identity = 110/296 (37.16%), Postives = 157/296 (53.04%), Query Frame = 0 Query: 45 KRAFATTTTAADVS-NDSXXXXPPPATPHAATFQDPRQEILAAALPLVAKHGWTEETLAAGAASLGFPAVAHGMFGRGAIELVEYAMAQIDAAWVAELEARQDELASLPSSRERLERAIRWRLRLIAPYLAQWPQALALGLSPHNLETTARGLAEVADELCVTTEKDEGMDLTNWYAHRATVCSVYVATELFFLTDYSEDYQDTWAFLERRLRDVEALSHAPTNVQEGVLAFQTAASAMASAVASLAQP-----AMMGALQKVP----WTGTIV--AVMHTALANLAAMAPASPST 329 ++ F T TAA V + T + DP + IL A+ V HGWT E LAAGA L +P+VAHGMF RGA+ELVEY M A L D+L ++ + ERL+ +R RL ++ P +A WPQA+A+G P N TA+ LA+++DE+ D+ D +WY RA + +Y +TELF L D S ++QDTWAFL+RR+ + L P N+ + ++ SAV SLA P L +VP G++V +V+ + L +PAS +T Sbjct: 34 RQCFQTAPTAAQVRLQSTQTSGASEETAKSELPVDPEKRILIKAIEHVTVHGWTIEALAAGATDLNYPSVAHGMFARGAVELVEYFMDSCLAKLRETLIVNTDKLQTM-TVAERLKFGVRARLEMLEPVMATWPQAMAIGALPQNAPNTAKRLAQISDEIWYFA-GDKSTDF-SWYTKRAILTGIYASTELFMLNDKSPNFQDTWAFLDRRVDETIQLGELPQNLNDVAGMASIGLQSVFSAVTSLAGPLAGQIISNSPLNQVPNPISAVGSVVPPSVVSAVASGLPFNSPASATT 326
BLAST of NO05G03860 vs. NCBI_GenBank
Match: XP_024579550.1 (rpsu-divergently transcribed protein [Plasmopara halstedii] >CEG43181.1 rpsu-divergently transcribed protein [Plasmopara halstedii]) HSP 1 Score: 153.7 bits (387), Expect = 1.100e-33 Identity = 91/222 (40.99%), Postives = 131/222 (59.01%), Query Frame = 0 Query: 71 PHAATFQDPRQEILAAALPLVAKHGWTEETLAAGAASLGFPAVAHGMFGRGAIELVEYAMAQIDAAWVAELEARQDELASLPSSRERLERAIRWRLRLIAPYLAQWPQALALGLSPHNLETTARGLAEVADELCVTTEKDEGMDLTNWYAHRATVCSVYVATELFFLTDYSEDYQDTWAFLERRLRDVEALSHAPTNVQEGVLAFQTAASAMASAVASLAQP 293 P + + D Q ILA + V HGWT E LAAGA LG+P+VAHGMF RGAIELV+Y M L ++L ++ + ERL+ +R RL ++ P LA WPQ +A+G P N TA+ LA+++DE+ D+ DL +WY RA + ++Y +TELF L D S + Q+TW FL+RR+ + +L P N+ + ++ ++ SAV SLA P Sbjct: 63 PQSESSVDLEQRILAKTMDNVPVHGWTVEALAAGAIDLGYPSVAHGMFSRGAIELVDYFMDTCLNKLRETLINNTEKLQAM-TVAERLKFGVRTRLEMLEPVLATWPQGMAIGAFPQNAPGTAKRLAKLSDEIWYFA-GDKSTDL-SWYTKRAILSAIYASTELFMLNDKSPNRQETWEFLDRRVDETISLGELPQNLNDALIMANIGLQSVFSAVTSLAGP 281
BLAST of NO05G03860 vs. NCBI_GenBank
Match: XP_002909148.1 (ubiquinone biosynthesis protein COQ9 [Phytophthora infestans T30-4] >EEY57962.1 ubiquinone biosynthesis protein COQ9 [Phytophthora infestans T30-4]) HSP 1 Score: 152.1 bits (383), Expect = 3.300e-33 Identity = 102/264 (38.64%), Postives = 142/264 (53.79%), Query Frame = 0 Query: 39 LNTKPTKRAFATTTTAADVSNDSXXXXPPPATPHAATFQDPRQEILAAALPLVAKHGWTEETLAAGAASLGFPAVAHGMFGRGAIELVEYAMAQIDAAWVAELEARQDELASLPSSRERLERAIRWRLRLIAPYLAQWPQALALGLSPHNLETTARGLAEVADELCVTTEKDEGMDLTNWYAHRATVCSVYVATELFFLTDYSEDYQDTWAFLERRLRDVEALSHAPTNVQEGVLAFQTAASAMASAVASLAQPAMMGALQKVP 303 +N + + A AT T + S PP DP Q ILA AL V HGW E LAAGA LG+P+VAHGMF RGAI+LV+Y M A L ++L ++ + ERL+ + RL+++ P LA WPQA+A+G P N TA+ LA+++DE+ D+ DL +WY RA + +Y +TELF L D S ++QDTW FL+RR+ + L P N+ + ++ SAV SLA P + P Sbjct: 31 VNLQCFQTAPATRQTRLQSTQTSSSDEPPKTESPV----DPEQLILAKALDHVISHGWAIEALAAGATDLGYPSVAHGMFQRGAIDLVDYFMDSCLAKLRETLIVNTEKLQAM-TVTERLKFGVCTRLQMLEPVLATWPQAMAIGALPQNAPGTAKRLAQLSDEIWYFA-GDKSTDL-SWYTKRAILTGIYASTELFMLNDKSPNFQDTWDFLDRRVDETIQLGELPQNLNDVAGMASIGLQSVFSAVTSLAGPLASQIISNSP 287
BLAST of NO05G03860 vs. NCBI_GenBank
Match: PVD20667.1 (hypothetical protein C0Q70_18825 [Pomacea canaliculata]) HSP 1 Score: 143.7 bits (361), Expect = 1.200e-30 Identity = 83/189 (43.92%), Postives = 109/189 (57.67%), Query Frame = 0 Query: 78 DPRQEILAAALPLVAKHGWTEETLAAGAASLGFPAVAHGMFGRGAIELVE--YAMAQIDAAWVAELEARQDELASLPSSRERLERAIRWRLRLIAPYLAQWPQALALGLSPHNLETTARGLAEVADELCVTTEKDEGMDLTNWYAHRATVCSVYVATELFFLTDYSEDYQDTWAFLERRLRDVEALSHA 265 D R IL AALP V HGWT + LAAGA + G+PAV HGMF RG EL+ Y+ + + + + E PS+RE + A+ RLR+I PY+ WPQA+A+ P N + LA + DE+ D +D NWY RA + VY ATE++ L D SED DTWAFL RRL D++ L +A Sbjct: 705 DSRHRILEAALPFVHVHGWTRKALAAGAEAEGYPAVTHGMFPRGGAELISFFYSTSNKRLGTILAEKVQSLEEEEKPSTREFIGYALEARLRMILPYIDTWPQAMAIQTLPQNAVESWTNLANLVDEVWYYA-GDRSVDF-NWYTKRAALAGVYKATEIYMLQDRSEDNTDTWAFLHRRLDDMKTLGNA 891
BLAST of NO05G03860 vs. NCBI_GenBank
Match: XP_008901393.1 (rpsU-divergently transcribed protein, variant [Phytophthora parasitica INRA-310] >ETK92610.1 rpsU-divergently transcribed protein, variant [Phytophthora parasitica] >ETL46019.1 rpsU-divergently transcribed protein, variant [Phytophthora parasitica] >ETN13350.1 rpsU-divergently transcribed protein, variant [Phytophthora parasitica INRA-310] >ETO81408.1 rpsU-divergently transcribed protein, variant [Phytophthora parasitica P1976] >ETP22569.1 rpsU-divergently transcribed protein, variant [Phytophthora parasitica CJ01A1]) HSP 1 Score: 142.9 bits (359), Expect = 2.000e-30 Identity = 93/246 (37.80%), Postives = 136/246 (55.28%), Query Frame = 0 Query: 96 WTEETLAAGAASLGFPAVAHGMFGRGAIELVEYAMAQIDAAWVAELEARQDELASLPSSRERLERAIRWRLRLIAPYLAQWPQALALGLSPHNLETTARGLAEVADELCVTTEKDEGMDLTNWYAHRATVCSVYVATELFFLTDYSEDYQDTWAFLERRLRDVEALSHAPTNVQEGVLAFQTAASAMASAVASLAQPAMMGALQKVPWT---------GTIV--AVMHTALANLAAMAPASPSTCG 331 WT E LAAGA LG+P+VAHGMF RGA+ELVEY M A L ++L ++ + ERL+ +R RL ++ P LA WPQ +A+G P N +TA+ LA ++DE+ D+ DL +WY RA + +Y +TELF L D S ++QDTWAFL+RR+ + L P N+ + ++ SAV SLA P + P + G++V +V+ + + +PAS + G Sbjct: 9 WTIEALAAGATDLGYPSVAHGMFSRGAVELVEYFMDSCLAKLRETLIVNTEKLQAM-TVAERLKFGVRARLEMLEPVLATWPQGMAIGALPQNAPSTAKRLAMLSDEIWYFA-GDKSTDL-SWYTKRAILTGIYASTELFMLNDKSPNFQDTWAFLDRRVDETIQLGELPQNLNDVAGMASIGLQSVFSAVTSLAGPLAGQIISNSPLSQVPNPISAVGSVVPPSVVSAVASGMPFNSPASAGSAG 251
BLAST of NO05G03860 vs. NCBI_GenBank
Match: ETI52730.1 (rpsU-divergently transcribed protein, variant [Phytophthora parasitica P1569] >ETL99173.1 rpsU-divergently transcribed protein, variant [Phytophthora parasitica] >ETM52326.1 rpsU-divergently transcribed protein, variant [Phytophthora parasitica] >ETP50535.1 rpsU-divergently transcribed protein, variant [Phytophthora parasitica P10297]) HSP 1 Score: 142.1 bits (357), Expect = 3.400e-30 Identity = 93/244 (38.11%), Postives = 136/244 (55.74%), Query Frame = 0 Query: 96 WTEETLAAGAASLGFPAVAHGMFGRGAIELVEYAMAQIDAAWVAELEARQDELASLPSSRERLERAIRWRLRLIAPYLAQWPQALALGLSPHNLETTARGLAEVADELCVTTEKDEGMDLTNWYAHRATVCSVYVATELFFLTDYSEDYQDTWAFLERRLRDVEALSHAPTNVQEGVLAFQTAASAMASAVASLAQPAMMGALQKVPWT------GTIVAVMHTALANLAA--MAPASPSTCGP 332 WT E LAAGA LG+P+VAHGMF RGA+ELVEY M A L ++L ++ + ERL+ +R RL ++ P LA WPQ +A+G P N +TA+ LA ++DE+ D+ DL +WY RA + +Y +TELF L D S ++QDTWAFL+RR+ + L P N+ + ++ SAV SLA P + P + + +V+ ++ + A M SP++ GP Sbjct: 9 WTIEALAAGATDLGYPSVAHGMFSRGAVELVEYFMDSCLAKLRETLIVNTEKLQAM-TVAERLKFGVRARLEMLEPVLATWPQGMAIGALPQNAPSTAKRLAMLSDEIWYFA-GDKSTDL-SWYTKRAILTGIYASTELFMLNDKSPNFQDTWAFLDRRVDETIQLGELPQNLNDVAGMASIGLQSVFSAVTSLAGPLAGQIISNSPLSQVPNPISAVGSVVPPSVVSAVASGMPFNSPASAGP 249
BLAST of NO05G03860 vs. NCBI_GenBank
Match: XP_022292029.1 (ubiquinone biosynthesis protein COQ9, mitochondrial-like isoform X3 [Crassostrea virginica]) HSP 1 Score: 141.4 bits (355), Expect = 5.900e-30 Identity = 79/198 (39.90%), Postives = 116/198 (58.59%), Query Frame = 0 Query: 80 RQEILAAALPLVAKHGWTEETLAAGAASLGFPAVAHGMFGRGAIELVEY-------AMAQIDAAWVAELEARQDELASLPSSRERLERAIRWRLRLIAPYLAQWPQALALGLSPHNLETTARGLAEVADELCVTTEKDEGMDLTNWYAHRATVCSVYVATELFFLTDYSEDYQDTWAFLERRLRDVEALSHAPTNVQE 271 +Q IL A+LP V ++GWT++ + AGA S+G P+V HGMF RG +ELV Y ++ I V EL+ + +++ + P ++ AI RL++I PY+ +WPQA+A+ P N + L+ V D++ D D NWY R ++ +VY +TE++ L D SEDY DTW FLE RL DV H N+QE Sbjct: 105 KQAILKASLPFVHQYGWTKKAIVAGAESIGMPSVVHGMFPRGGVELVFYFYEECNQELSTILKEKVQELKEKDEKIKTGPF----IQNAIESRLKMIIPYIDKWPQAMAIQTLPQNAVQSWTNLSRVMDDIWFYA-GDRSNDF-NWYTKRVSLAAVYKSTEIYMLQDSSEDYLDTWCFLENRLEDVVKAGHFARNIQE 296
BLAST of NO05G03860 vs. NCBI_GenBank
Match: XP_022292030.1 (ubiquinone biosynthesis protein COQ9, mitochondrial-like isoform X4 [Crassostrea virginica]) HSP 1 Score: 141.4 bits (355), Expect = 5.900e-30 Identity = 79/198 (39.90%), Postives = 116/198 (58.59%), Query Frame = 0 Query: 80 RQEILAAALPLVAKHGWTEETLAAGAASLGFPAVAHGMFGRGAIELVEY-------AMAQIDAAWVAELEARQDELASLPSSRERLERAIRWRLRLIAPYLAQWPQALALGLSPHNLETTARGLAEVADELCVTTEKDEGMDLTNWYAHRATVCSVYVATELFFLTDYSEDYQDTWAFLERRLRDVEALSHAPTNVQE 271 +Q IL A+LP V ++GWT++ + AGA S+G P+V HGMF RG +ELV Y ++ I V EL+ + +++ + P ++ AI RL++I PY+ +WPQA+A+ P N + L+ V D++ D D NWY R ++ +VY +TE++ L D SEDY DTW FLE RL DV H N+QE Sbjct: 85 KQAILKASLPFVHQYGWTKKAIVAGAESIGMPSVVHGMFPRGGVELVFYFYEECNQELSTILKEKVQELKEKDEKIKTGPF----IQNAIESRLKMIIPYIDKWPQAMAIQTLPQNAVQSWTNLSRVMDDIWFYA-GDRSNDF-NWYTKRVSLAAVYKSTEIYMLQDSSEDYLDTWCFLENRLEDVVKAGHFARNIQE 276
BLAST of NO05G03860 vs. NCBI_GenBank
Match: XP_022292028.1 (ubiquinone biosynthesis protein COQ9, mitochondrial-like isoform X2 [Crassostrea virginica]) HSP 1 Score: 141.4 bits (355), Expect = 5.900e-30 Identity = 79/198 (39.90%), Postives = 116/198 (58.59%), Query Frame = 0 Query: 80 RQEILAAALPLVAKHGWTEETLAAGAASLGFPAVAHGMFGRGAIELVEY-------AMAQIDAAWVAELEARQDELASLPSSRERLERAIRWRLRLIAPYLAQWPQALALGLSPHNLETTARGLAEVADELCVTTEKDEGMDLTNWYAHRATVCSVYVATELFFLTDYSEDYQDTWAFLERRLRDVEALSHAPTNVQE 271 +Q IL A+LP V ++GWT++ + AGA S+G P+V HGMF RG +ELV Y ++ I V EL+ + +++ + P ++ AI RL++I PY+ +WPQA+A+ P N + L+ V D++ D D NWY R ++ +VY +TE++ L D SEDY DTW FLE RL DV H N+QE Sbjct: 116 KQAILKASLPFVHQYGWTKKAIVAGAESIGMPSVVHGMFPRGGVELVFYFYEECNQELSTILKEKVQELKEKDEKIKTGPF----IQNAIESRLKMIIPYIDKWPQAMAIQTLPQNAVQSWTNLSRVMDDIWFYA-GDRSNDF-NWYTKRVSLAAVYKSTEIYMLQDSSEDYLDTWCFLENRLEDVVKAGHFARNIQE 307 The following BLAST results are available for this feature:
BLAST of NO05G03860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G03860 ID=NO05G03860|Name=NO05G03860|organism=Nannochloropsis oceanica|type=gene|length=1122bpback to top protein sequence of NO05G03860.1 >NO05G03860.1-protein ID=NO05G03860.1-protein|Name=NO05G03860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=374bpback to top Synonyms
Publications
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