NO05G03860.1, NO05G03860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03860.1
Unique NameNO05G03860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1122
Alignment locationchr5:1000377..1001498 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1000377..1001498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G03860.1 vs.
Match: EWM27936.1 (ubiquinone biosynthesis protein mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 400.2 bits (1027), Expect = 7.000e-108
Identity = 218/324 (67.28%), Postives = 260/324 (80.25%), Query Frame = 0
Query:   43 PTKRAFATTTTAA--DVSNDSSTDAPPPATPHAATFQDPRQEILAAALPLVAKHGWTEETLAAGAASLGFPAVAHGMFGRGAIELVEYAMAQIDAAWVAELEARQDELASLPSSRERLERAIRWRLRLIAPYLAQWPQALALGLSPHNLETTARGLAEVADELCVTTEKDEGMDLTNWYAHRATVCSVYVATELFFLTDYSEDYQDTWAFLERRLRDVEALSHAPTNVQEGVLAFQTAASAMASAVASLAQPAMMGALQKVPWTGTIVAVMHTALANLAAMAPASPSTCGPFQEKWDVAGKGGKEEGSQSSTDYRVPLEKDPYA 365
            P  RAF   +TA   D S      +   ++   +TFQDPRQEILAAALPLV  HGWTEE LAAGAASLGFPAVAHGMF RG IELVE+ +AQID+AW+AELEAR++ELA+ PSSRERLE+AI+ RLRLIAP+LAQWPQA+AL LSP +LETTARGLAEVADELCV + +D  +++ NWYAHRATVCSVY+ATELFFLTDYS+DY+DTWAFL RRL+DVEALSHAP NVQEGVLAFQTAASAMASA++SL QPA++G L+KVP TGT+V V+H  LANLAAMAP +PS   PF +      +  K+  +++ST++    E DPYA
Sbjct:   44 PVVRAFKAFSTADHFDRSKTEEESSNAASSASTSTFQDPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGED-SVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQEGVLAFQTAASAMASALSSLTQPAVVGVLEKVPLTGTVVTVVHAVLANLAAMAPTTPS---PFDQ------EESKKRETETSTEFGPSTEIDPYA 357          
The following BLAST results are available for this feature:
BLAST of NO05G03860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27936.17.000e-10867.28ubiquinone biosynthesis protein mitochondrial [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03860NO05G03860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03860.1NO05G03860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03860.1.cds1NO05G03860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03860.1 ID=NO05G03860.1|Name=NO05G03860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1122bp
ATGCGTGGACGTCCGGCCCTCTCTGCCGTTGTTCTAGCCCGCCGGTGCCT
GGCCTCTCCCCAGCATCTGGCCGCAAAGAGTCAGACGGTGCTAGTGCCGC
ATCGTCCAGGCCACCTCAACACCAAACCCACAAAGAGAGCTTTTGCCACC
ACCACCACCGCTGCCGATGTGTCCAACGACAGTAGCACAGATGCGCCTCC
GCCTGCCACGCCACATGCCGCGACTTTCCAAGACCCGCGACAAGAGATCC
TTGCGGCGGCATTGCCCCTAGTCGCCAAGCATGGTTGGACCGAAGAGACC
TTGGCAGCTGGTGCTGCCTCACTCGGGTTTCCTGCCGTAGCGCACGGCAT
GTTTGGACGGGGTGCCATTGAATTGGTGGAGTACGCTATGGCACAAATTG
ATGCTGCATGGGTCGCCGAGCTTGAGGCGCGTCAAGACGAATTGGCTTCT
TTGCCCTCGTCACGTGAGAGGTTGGAGCGAGCGATTCGATGGCGCCTGCG
ATTAATTGCCCCCTATTTAGCACAATGGCCACAAGCCTTGGCGCTAGGGT
TGTCGCCGCACAATTTGGAGACAACCGCACGGGGATTGGCGGAAGTGGCG
GACGAGTTGTGTGTGACCACGGAGAAGGATGAGGGGATGGACTTGACAAA
TTGGTACGCGCATCGCGCCACCGTCTGCTCGGTTTACGTAGCCACGGAAT
TATTTTTCCTGACGGATTACTCAGAGGATTATCAGGACACCTGGGCATTT
TTGGAAAGGCGACTTCGGGATGTTGAGGCTTTGTCGCATGCCCCTACCAA
TGTGCAGGAGGGGGTTCTAGCCTTCCAGACCGCCGCCTCCGCCATGGCCT
CAGCGGTTGCTTCTTTGGCACAGCCTGCCATGATGGGGGCATTGCAAAAA
GTACCATGGACAGGGACAATTGTCGCAGTGATGCATACTGCCTTGGCTAA
TCTGGCCGCAATGGCCCCGGCGAGTCCGTCAACTTGTGGGCCCTTCCAAG
AGAAGTGGGATGTAGCGGGGAAAGGAGGGAAGGAAGAGGGTAGCCAAAGT
TCGACCGATTATAGAGTGCCCTTGGAGAAAGATCCATACGCGGAGGAAGA
AGCCCAGAGGCTGAAGAAGTGA
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protein sequence of NO05G03860.1

>NO05G03860.1-protein ID=NO05G03860.1-protein|Name=NO05G03860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MRGRPALSAVVLARRCLASPQHLAAKSQTVLVPHRPGHLNTKPTKRAFAT
TTTAADVSNDSSTDAPPPATPHAATFQDPRQEILAAALPLVAKHGWTEET
LAAGAASLGFPAVAHGMFGRGAIELVEYAMAQIDAAWVAELEARQDELAS
LPSSRERLERAIRWRLRLIAPYLAQWPQALALGLSPHNLETTARGLAEVA
DELCVTTEKDEGMDLTNWYAHRATVCSVYVATELFFLTDYSEDYQDTWAF
LERRLRDVEALSHAPTNVQEGVLAFQTAASAMASAVASLAQPAMMGALQK
VPWTGTIVAVMHTALANLAAMAPASPSTCGPFQEKWDVAGKGGKEEGSQS
STDYRVPLEKDPYAEEEAQRLKK*
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mRNA from alignment at chr5:1000377..1001498-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03860.1 ID=NO05G03860.1|Name=NO05G03860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1122bp|location=Sequence derived from alignment at chr5:1000377..1001498- (Nannochloropsis oceanica)
ATGCGTGGACGTCCGGCCCTCTCTGCCGTTGTTCTAGCCCGCCGGTGCCT GGCCTCTCCCCAGCATCTGGCCGCAAAGAGTCAGACGGTGCTAGTGCCGC ATCGTCCAGGCCACCTCAACACCAAACCCACAAAGAGAGCTTTTGCCACC ACCACCACCGCTGCCGATGTGTCCAACGACAGTAGCACAGATGCGCCTCC GCCTGCCACGCCACATGCCGCGACTTTCCAAGACCCGCGACAAGAGATCC TTGCGGCGGCATTGCCCCTAGTCGCCAAGCATGGTTGGACCGAAGAGACC TTGGCAGCTGGTGCTGCCTCACTCGGGTTTCCTGCCGTAGCGCACGGCAT GTTTGGACGGGGTGCCATTGAATTGGTGGAGTACGCTATGGCACAAATTG ATGCTGCATGGGTCGCCGAGCTTGAGGCGCGTCAAGACGAATTGGCTTCT TTGCCCTCGTCACGTGAGAGGTTGGAGCGAGCGATTCGATGGCGCCTGCG ATTAATTGCCCCCTATTTAGCACAATGGCCACAAGCCTTGGCGCTAGGGT TGTCGCCGCACAATTTGGAGACAACCGCACGGGGATTGGCGGAAGTGGCG GACGAGTTGTGTGTGACCACGGAGAAGGATGAGGGGATGGACTTGACAAA TTGGTACGCGCATCGCGCCACCGTCTGCTCGGTTTACGTAGCCACGGAAT TATTTTTCCTGACGGATTACTCAGAGGATTATCAGGACACCTGGGCATTT TTGGAAAGGCGACTTCGGGATGTTGAGGCTTTGTCGCATGCCCCTACCAA TGTGCAGGAGGGGGTTCTAGCCTTCCAGACCGCCGCCTCCGCCATGGCCT CAGCGGTTGCTTCTTTGGCACAGCCTGCCATGATGGGGGCATTGCAAAAA GTACCATGGACAGGGACAATTGTCGCAGTGATGCATACTGCCTTGGCTAA TCTGGCCGCAATGGCCCCGGCGAGTCCGTCAACTTGTGGGCCCTTCCAAG AGAAGTGGGATGTAGCGGGGAAAGGAGGGAAGGAAGAGGGTAGCCAAAGT TCGACCGATTATAGAGTGCCCTTGGAGAAAGATCCATACGCGGAGGAAGA AGCCCAGAGGCTGAAGAAGTGA
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Coding sequence (CDS) from alignment at chr5:1000377..1001498-

>NO05G03860.1 ID=NO05G03860.1|Name=NO05G03860.1|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at chr5:1000377..1001498- (Nannochloropsis oceanica)
ATGCGTGGACGTCCGGCCCTCTCTGCCGTTGTTCTAGCCCGCCGGTGCCT
GGCCTCTCCCCAGCATCTGGCCGCAAAGAGTCAGACGGTGCTAGTGCCGC
ATCGTCCAGGCCACCTCAACACCAAACCCACAAAGAGAGCTTTTGCCACC
ACCACCACCGCTGCCGATGTGTCCAACGACAGTAGCACAGATGCGCCTCC
GCCTGCCACGCCACATGCCGCGACTTTCCAAGACCCGCGACAAGAGATCC
TTGCGGCGGCATTGCCCCTAGTCGCCAAGCATGGTTGGACCGAAGAGACC
TTGGCAGCTGGTGCTGCCTCACTCGGGTTTCCTGCCGTAGCGCACGGCAT
GTTTGGACGGGGTGCCATTGAATTGGTGGAGTACGCTATGGCACAAATTG
ATGCTGCATGGGTCGCCGAGCTTGAGGCGCGTCAAGACGAATTGGCTTCT
TTGCCCTCGTCACGTGAGAGGTTGGAGCGAGCGATTCGATGGCGCCTGCG
ATTAATTGCCCCCTATTTAGCACAATGGCCACAAGCCTTGGCGCTAGGGT
TGTCGCCGCACAATTTGGAGACAACCGCACGGGGATTGGCGGAAGTGGCG
GACGAGTTGTGTGTGACCACGGAGAAGGATGAGGGGATGGACTTGACAAA
TTGGTACGCGCATCGCGCCACCGTCTGCTCGGTTTACGTAGCCACGGAAT
TATTTTTCCTGACGGATTACTCAGAGGATTATCAGGACACCTGGGCATTT
TTGGAAAGGCGACTTCGGGATGTTGAGGCTTTGTCGCATGCCCCTACCAA
TGTGCAGGAGGGGGTTCTAGCCTTCCAGACCGCCGCCTCCGCCATGGCCT
CAGCGGTTGCTTCTTTGGCACAGCCTGCCATGATGGGGGCATTGCAAAAA
GTACCATGGACAGGGACAATTGTCGCAGTGATGCATACTGCCTTGGCTAA
TCTGGCCGCAATGGCCCCGGCGAGTCCGTCAACTTGTGGGCCCTTCCAAG
AGAAGTGGGATGTAGCGGGGAAAGGAGGGAAGGAAGAGGGTAGCCAAAGT
TCGACCGATTATAGAGTGCCCTTGGAGAAAGATCCATACGCGGAGGAAGA
AGCCCAGAGGCTGAAGAAGTGA
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Synonyms
Publications