NO05G03800, NO05G03800 (gene) Nannochloropsis oceanica

Overview
NameNO05G03800
Unique NameNO05G03800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1867
Alignment locationchr5:991006..992872 +

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Properties
Property NameValue
DescriptionEukaryotic translation initiation factor 1a
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:991006..992872 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003743translation initiation factor activity
GO:0008135translation factor activity, RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR006196RNA-binding_domain_S1_IF1
IPR001253TIF_eIF-1A
Homology
BLAST of NO05G03800 vs. NCBI_GenBank
Match: XP_024576441.1 (eukaryotic translation initiation factor x-chromosomal [Plasmopara halstedii] >CEG40072.1 eukaryotic translation initiation factor x-chromosomal [Plasmopara halstedii])

HSP 1 Score: 179.1 bits (453), Expect = 1.700e-41
Identity = 83/126 (65.87%), Postives = 97/126 (76.98%), Query Frame = 0
Query:  109 MPKNXXXXXXXXXXXXXXXXETKRDLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEG 235
            MPKN                E KRDL FKE+GQEY QV+RMLGNGR E YCFDG  RL HIRGKMRKKVWV AGDI+L+ +R+YQ+ KVD+IHKYNADEAR+LKA+GELP+ A+INETA+D+ MEG
Sbjct:    1 MPKNKGKGGKNRRRGKNDNEENKRDLEFKEDGQEYAQVVRMLGNGRLEAYCFDGVTRLGHIRGKMRKKVWVGAGDIILVSLREYQDGKVDVIHKYNADEARSLKAYGELPDNARINETAVDMAMEG 126          
BLAST of NO05G03800 vs. NCBI_GenBank
Match: GAX16111.1 (translation initiation factor 1A [Fistulifera solaris])

HSP 1 Score: 175.6 bits (444), Expect = 1.900e-40
Identity = 79/110 (71.82%), Postives = 98/110 (89.09%), Query Frame = 0
Query:  140 GQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250
            GQEY QV++MLGNGRCE +CFDG  RL HIRGKMRKKVW++AGDIVL+  RD+Q++KVDIIHKY+ADEARNLK +GELPETA+INETA+D+ M G +D +D+IG+DFD+I
Sbjct:   58 GQEYAQVVKMLGNGRCECFCFDGVTRLGHIRGKMRKKVWITAGDIVLVAKRDFQDEKVDIIHKYSADEARNLKQYGELPETARINETAVDMAMAGDAD-DDDIGIDFDDI 166          
BLAST of NO05G03800 vs. NCBI_GenBank
Match: XP_008875339.1 (eukaryotic translation initiation factor 1A, Y-chromosomal [Aphanomyces invadans] >XP_009830708.1 eukaryotic translation initiation factor 1A, Y-chromosomal [Aphanomyces astaci] >ETV79772.1 eukaryotic translation initiation factor 1A, Y-chromosomal [Aphanomyces astaci] >ETV96028.1 eukaryotic translation initiation factor 1A, Y-chromosomal [Aphanomyces invadans])

HSP 1 Score: 175.3 bits (443), Expect = 2.400e-40
Identity = 83/121 (68.60%), Postives = 101/121 (83.47%), Query Frame = 0
Query:  129 ETKRDLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250
            E KR+L FKE+GQEY QVLRMLGNGR E YC+DG  RL HIRGKMRKKVWV  GDIVL+ +R+YQ+ KVDIIHKYNADEAR+LKA+GELP+ A+INET++D  M+G  D +D+ G +FD+I
Sbjct:   24 ENKRELEFKEDGQEYAQVLRMLGNGRLEAYCYDGVTRLGHIRGKMRKKVWVGVGDIVLVSLREYQDGKVDIIHKYNADEARSLKAYGELPDNARINETSVD--MDGAGD-DDDCGFEFDDI 141          
BLAST of NO05G03800 vs. NCBI_GenBank
Match: GAX98441.1 (eukaryotic translation initiation factor 1A, putative [Pythium insidiosum])

HSP 1 Score: 174.5 bits (441), Expect = 4.200e-40
Identity = 98/141 (69.50%), Postives = 116/141 (82.27%), Query Frame = 0
Query:  109 MPKNXXXXXXXXXXXXXXXXETKRDLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250
            MPKN  XXXXXXXXXXXXXX     L FKEEGQEY QV+RMLGNGR E YCFDG  RL HIRGKMRKKVWV AGDI+L+ +R+YQ+ KVD+IHKYNADEAR+LKA+GELP+ A+INET++++ ME     +D+IG DFD+I
Sbjct:    1 MPKNKGXXXXXXXXXXXXXXXXXXXLEFKEEGQEYAQVVRMLGNGRLEAYCFDGVTRLGHIRGKMRKKVWVGAGDIILVSLREYQDGKVDVIHKYNADEARSLKAYGELPDNARINETSVEMAME---PDDDDIGFDFDDI 138          
BLAST of NO05G03800 vs. NCBI_GenBank
Match: OQR94965.1 (eukaryotic translation initiation factor 1A [Thraustotheca clavata])

HSP 1 Score: 173.3 bits (438), Expect = 9.300e-40
Identity = 82/117 (70.09%), Postives = 100/117 (85.47%), Query Frame = 0
Query:  133 DLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250
            +L FKE+GQEY QVLRMLGNGR E YC+DG  RL HIRGKMRKKVWV AGDIVL+ +R+YQ+ KVD+IHKYNADEAR+LKA+GELP+ A+INET +D  MEGG+D +D+ G +FD+I
Sbjct:   27 ELEFKEDGQEYAQVLRMLGNGRLEAYCYDGVTRLGHIRGKMRKKVWVGAGDIVLVSLREYQDGKVDVIHKYNADEARSLKAYGELPDNARINETNVD--MEGGND-DDDCGFEFDDI 140          
BLAST of NO05G03800 vs. NCBI_GenBank
Match: OQR82338.1 (eukaryotic translation initiation factor 1A [Achlya hypogyna])

HSP 1 Score: 172.9 bits (437), Expect = 1.200e-39
Identity = 82/117 (70.09%), Postives = 99/117 (84.62%), Query Frame = 0
Query:  133 DLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250
            +L FKE+GQEY QVLRMLGNGR E YC+DG  RL HIRGKMRKKVWV AGDIVL+ +R+YQ+ KVD+IHKYNADEAR+LKA+GELP+ A+INET +D  MEGG D +D+ G +FD+I
Sbjct:   27 ELEFKEDGQEYAQVLRMLGNGRLEAYCYDGVTRLGHIRGKMRKKVWVGAGDIVLVSLREYQDGKVDVIHKYNADEARSLKAYGELPDNARINETNVD--MEGGGD-DDDCGFEFDDI 140          
BLAST of NO05G03800 vs. NCBI_GenBank
Match: EJK58953.1 (hypothetical protein THAOC_20881 [Thalassiosira oceanica])

HSP 1 Score: 172.2 bits (435), Expect = 2.100e-39
Identity = 77/111 (69.37%), Postives = 98/111 (88.29%), Query Frame = 0
Query:  139 EGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250
            E QEY QV+RMLGNGRCE +C+DG  RL HIRGKMRKK+W++AGDIVL+G RD+Q++KVDI+HKY+ADEARNLK +GELPETA+INETA+D  M G ++ +D+IG+DFD+I
Sbjct:   10 EDQEYAQVVRMLGNGRCECFCYDGVTRLGHIRGKMRKKIWITAGDIVLVGKRDFQDEKVDILHKYSADEARNLKQYGELPETARINETAVDQAM-GFANDDDDIGIDFDDI 119          
BLAST of NO05G03800 vs. NCBI_GenBank
Match: XP_008608367.1 (translation initiation factor 1A [Saprolegnia diclina VS20] >XP_012206309.1 hypothetical protein SPRG_11868 [Saprolegnia parasitica CBS 223.65] >EQC38040.1 translation initiation factor 1A [Saprolegnia diclina VS20] >KDO23021.1 hypothetical protein SPRG_11868 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 171.8 bits (434), Expect = 2.700e-39
Identity = 81/114 (71.05%), Postives = 97/114 (85.09%), Query Frame = 0
Query:  136 FKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250
            FKE+GQEY QVLRMLGNGR E YC+DG  RL HIRGKMRKKVWV AGDIVL+ +R+YQ+ KVD+IHKYNADEAR+LKA+GELP+ A+INET +D  MEGG D +D+ G +FD+I
Sbjct:   31 FKEDGQEYAQVLRMLGNGRLEAYCYDGVTRLGHIRGKMRKKVWVGAGDIVLVSLREYQDGKVDVIHKYNADEARSLKAYGELPDNARINETNVD--MEGGGD-DDDCGFEFDDI 141          
BLAST of NO05G03800 vs. NCBI_GenBank
Match: KKY15584.1 (putative eukaryotic translation initiation factor 1a [Diplodia seriata] >OMP86074.1 Eukaryotic translation initiation factor 1A [Diplodia seriata])

HSP 1 Score: 168.3 bits (425), Expect = 3.000e-38
Identity = 83/140 (59.29%), Postives = 100/140 (71.43%), Query Frame = 0
Query:  109 MPKNXXXXXXXXXXXXXXXXETKRDLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDE 249
            MPKN                  KR+L+FKEEGQEY QV++MLGNGR E  CFDG+ RLAHIRGKMRKKVW++ GDI+LL +RDYQ++K D+I KYN+DEAR+LKA+GELPETAKINET       GG   E  IG +FD+
Sbjct:    1 MPKNKGKGGKNRRRGKNENDNLKRELVFKEEGQEYAQVVKMLGNGRLEAQCFDGEKRLAHIRGKMRKKVWINQGDIILLSLRDYQDEKGDVILKYNSDEARSLKAYGELPETAKINET----DTYGGEGDEGGIGFEFDD 136          
BLAST of NO05G03800 vs. NCBI_GenBank
Match: XP_021885978.1 (hypothetical protein BCR41DRAFT_344985 [Lobosporangium transversale] >OAQ32094.1 nucleic acid-binding protein [Mortierella elongata AG-77] >ORZ28293.1 hypothetical protein BCR41DRAFT_344985 [Lobosporangium transversale])

HSP 1 Score: 168.3 bits (425), Expect = 3.000e-38
Identity = 97/139 (69.78%), Postives = 116/139 (83.45%), Query Frame = 0
Query:  109 MPKNXXXXXXXXXXXXXXXXETKRDLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFD 248
            MPKN  XXXXXXXXXXXXXX  KR+L+FKE+GQEY QVL+MLGNGR E  CFDG+ RLAHIRGKMRKKVW++ GDI+L+ +RD+Q+DK D+I KYN +EARNLKA+GELPE+AKINET    T +G   SEDE+ V+FD
Sbjct:    1 MPKNKGXXXXXXXXXXXXXXXXKRELVFKEDGQEYAQVLKMLGNGRVEAQCFDGEKRLAHIRGKMRKKVWINQGDIILISLRDFQDDKADVILKYNTEEARNLKAYGELPESAKINETD---TFQG---SEDELDVEFD 133          
The following BLAST results are available for this feature:
BLAST of NO05G03800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_024576441.11.700e-4165.87eukaryotic translation initiation factor x-chromos... [more]
GAX16111.11.900e-4071.82translation initiation factor 1A [Fistulifera sola... [more]
XP_008875339.12.400e-4068.60eukaryotic translation initiation factor 1A, Y-chr... [more]
GAX98441.14.200e-4069.50eukaryotic translation initiation factor 1A, putat... [more]
OQR94965.19.300e-4070.09eukaryotic translation initiation factor 1A [Thrau... [more]
OQR82338.11.200e-3970.09eukaryotic translation initiation factor 1A [Achly... [more]
EJK58953.12.100e-3969.37hypothetical protein THAOC_20881 [Thalassiosira oc... [more]
XP_008608367.12.700e-3971.05translation initiation factor 1A [Saprolegnia dicl... [more]
KKY15584.13.000e-3859.29putative eukaryotic translation initiation factor ... [more]
XP_021885978.13.000e-3869.78hypothetical protein BCR41DRAFT_344985 [Lobosporan... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003476NSK003476Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03800.1NO05G03800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584875gene_3189Nannochloropsis oceanica (N. oceanica CCMP1779)gene
EIF1gene2544Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03800.1NO05G03800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03800 ID=NO05G03800|Name=NO05G03800|organism=Nannochloropsis oceanica|type=gene|length=1867bp
ATGCTGGTTGCAGCGGTGGCAGTGGAGTCGGCGACAGAGAAGGAAAAGGA
ACGGCGGGGCACGGATCGTGATTGTTGTGGTTGTGGTGGCGGGGATGATG
CCGTGGTGATGCTTCGCCAGCCGCAAGAAGATAGCGCGAGGGCTGAAGTC
GACATAGCGGCCCTTGTGCTAGACGAGGACGACGAGACAGCACTCGTCCC
TCgttgaacaagccgtctcaagagcatgacgacctacggcctgtgttggt
catggatgggttcggtcaaacaaagagcaaaagacgacagaatcgggcat
cagcaagcctcctcccctgggcgatgaccgaaggaggatgcaacggcgga
cgagcttccatgccttggcatgcgtatcgtgcgcgcgttccttgacccat
ggggtacaatctcgccaggcacacctttttgtagctcagtccatggtgat
gacgcggggttatgtggtttccaggccttgggtgtccgttgatcactccc
ctccctcctcccctaccctctcgcctcccccttcccatcccacaaaacct
cagGACGCACAGGACAAAACCCTTCGATCCATACCGCCTTGTTGCAGCAC
CAGACGCTTAACCCTTCTCTGAGCAGgtaagtcacttggtggatggcaca
gctaggtggctgagatgttgtgtctcgtgtttcccccgtcctgctagtca
caagcgatgcgcgtcgtggactgtggccatccctccctcactctctcacc
gctttctccaccctatccttataatcatacagTCGGGAATTTCAAAAACA
ATACCAGCAGTACCTATATCAGACAGCAGCCATGCCCAAGAACAAGGGAA
AGGGCGGCAAAAATCGGCGTCGAGGGAAGAACGAGAATGAGGAGACAAAG
CGCGACCTGCTCTTCAAGGAGGAAGGCCAAGgtccgtgggagcgcgcagt
gctcgcagacaacagaggggagacgaaaggaaaaggaaaggggagatagt
gatcacgtgaaagtagaatctggttctgcccttggaattgtgacagaccc
ttcccgtcctcttccctccccttccttctcctccttctcccgaaaatagA
GTACGGACAAGTACTACGTATGTTAGGCAATGGGCGATGCGAGGTGTATT
GCTTTGATGGGAAGAATCGCCTGGCGCACATTCGAGGGAAGATGCGCAAG
AAGGTGTGGGTATCAGCGgtgagtatttggcggcgtcctgtttggttgga
aggggtggagtgattgaggtagatgggggggaaagtcagggatgttattg
tcaactctgccggaagatttttttctctcaatatgtccctccgcctttct
gttgtactcctttgctgtatcacagGGTGATATTGTACTGCTGGGCATGC
GGGACTACCAGGAGGACAAGGTGGACATCATTCACAAGTACAACGCGGAC
GAGGCCCGGAACCTCAAGGCATTCGGTGAACTCCCAGAGACAGgtacgtg
tcttttatttttaatgtctggattggatttctgtgtgttatctttaggtg
atgggcaaaggaaggcgtggtttcaggcactcattaccagtactcgtcct
ccttccttcctctctccctccccccttctgcttttctaacagCCAAGATC
AATGAGACGGCAATAGACTTGACAATGGAAGGCGGCTCCGACTCGGAGGA
CGAGATTGGCGTGGACTTTGACGAGgttcgttccatgtccttttcccatc
ctgttgagtttttcccctactctcttgttattgtggtgacgaaactggat
aaatttgatttcgagaatttctcgttcttactggctccattcttttgtat
gaaacgcacagATCTAA
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protein sequence of NO05G03800.1

>NO05G03800.1-protein ID=NO05G03800.1-protein|Name=NO05G03800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MLVAAVAVESATEKEKERRGTDRDCCGCGGGDDAVVMLRQPQEDSARAEV
DIAALVLDEDDETALVPRRTGQNPSIHTALLQHQTLNPSLSSREFQKQYQ
QYLYQTAAMPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVLRML
GNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDII
HKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI*
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Synonyms
Publications