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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:991006..992872 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G03800.1 vs.
Match: EWM27963.1 (eukaryotic translation initiation factor 1a [Nannochloropsis gaditana]; EWM27964.1 eukaryotic translation initiation factor 1a [Nannochloropsis gaditana]) HSP 1 Score: 282.0 bits (720), Expect = 1.900e-72 Identity = 138/141 (97.87%), Postives = 141/141 (100.00%), Query Frame = 0
Query: 109 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250
MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQV++MLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLT+EGGSDSEDEIGVDFDEI
Sbjct: 1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFDEI 141
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G03800.1 ID=NO05G03800.1|Name=NO05G03800.1|organism=Nannochloropsis oceanica|type=mRNA|length=750bp ATGCTGGTTGCAGCGGTGGCAGTGGAGTCGGCGACAGAGAAGGAAAAGGA ACGGCGGGGCACGGATCGTGATTGTTGTGGTTGTGGTGGCGGGGATGATG CCGTGGTGATGCTTCGCCAGCCGCAAGAAGATAGCGCGAGGGCTGAAGTC GACATAGCGGCCCTTGTGCTAGACGAGGACGACGAGACAGCACTCGTCCC TCGACGCACAGGACAAAACCCTTCGATCCATACCGCCTTGTTGCAGCACC AGACGCTTAACCCTTCTCTGAGCAGTCGGGAATTTCAAAAACAATACCAG CAGTACCTATATCAGACAGCAGCCATGCCCAAGAACAAGGGAAAGGGCGG CAAAAATCGGCGTCGAGGGAAGAACGAGAATGAGGAGACAAAGCGCGACC TGCTCTTCAAGGAGGAAGGCCAAGAGTACGGACAAGTACTACGTATGTTA GGCAATGGGCGATGCGAGGTGTATTGCTTTGATGGGAAGAATCGCCTGGC GCACATTCGAGGGAAGATGCGCAAGAAGGTGTGGGTATCAGCGGGTGATA TTGTACTGCTGGGCATGCGGGACTACCAGGAGGACAAGGTGGACATCATT CACAAGTACAACGCGGACGAGGCCCGGAACCTCAAGGCATTCGGTGAACT CCCAGAGACAGCCAAGATCAATGAGACGGCAATAGACTTGACAATGGAAG GCGGCTCCGACTCGGAGGACGAGATTGGCGTGGACTTTGACGAGATCTAA back to topprotein sequence of NO05G03800.1 >NO05G03800.1-protein ID=NO05G03800.1-protein|Name=NO05G03800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp MLVAAVAVESATEKEKERRGTDRDCCGCGGGDDAVVMLRQPQEDSARAEV DIAALVLDEDDETALVPRRTGQNPSIHTALLQHQTLNPSLSSREFQKQYQ QYLYQTAAMPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVLRML GNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDII HKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI* back to topmRNA from alignment at chr5:991006..992872+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G03800.1 ID=NO05G03800.1|Name=NO05G03800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1867bp|location=Sequence derived from alignment at chr5:991006..992872+ (Nannochloropsis oceanica) ATGCTGGTTGCAGCGGTGGCAGTGGAGTCGGCGACAGAGAAGGAAAAGGA
ACGGCGGGGCACGGATCGTGATTGTTGTGGTTGTGGTGGCGGGGATGATG
CCGTGGTGATGCTTCGCCAGCCGCAAGAAGATAGCGCGAGGGCTGAAGTC
GACATAGCGGCCCTTGTGCTAGACGAGGACGACGAGACAGCACTCGTCCC
TCGTTGAACAAGCCGTCTCAAGAGCATGACGACCTACGGCCTGTGTTGGT
CATGGATGGGTTCGGTCAAACAAAGAGCAAAAGACGACAGAATCGGGCAT
CAGCAAGCCTCCTCCCCTGGGCGATGACCGAAGGAGGATGCAACGGCGGA
CGAGCTTCCATGCCTTGGCATGCGTATCGTGCGCGCGTTCCTTGACCCAT
GGGGTACAATCTCGCCAGGCACACCTTTTTGTAGCTCAGTCCATGGTGAT
GACGCGGGGTTATGTGGTTTCCAGGCCTTGGGTGTCCGTTGATCACTCCC
CTCCCTCCTCCCCTACCCTCTCGCCTCCCCCTTCCCATCCCACAAAACCT
CAGGACGCACAGGACAAAACCCTTCGATCCATACCGCCTTGTTGCAGCAC
CAGACGCTTAACCCTTCTCTGAGCAGGTAAGTCACTTGGTGGATGGCACA
GCTAGGTGGCTGAGATGTTGTGTCTCGTGTTTCCCCCGTCCTGCTAGTCA
CAAGCGATGCGCGTCGTGGACTGTGGCCATCCCTCCCTCACTCTCTCACC
GCTTTCTCCACCCTATCCTTATAATCATACAGTCGGGAATTTCAAAAACA
ATACCAGCAGTACCTATATCAGACAGCAGCCATGCCCAAGAACAAGGGAA
AGGGCGGCAAAAATCGGCGTCGAGGGAAGAACGAGAATGAGGAGACAAAG
CGCGACCTGCTCTTCAAGGAGGAAGGCCAAGGTCCGTGGGAGCGCGCAGT
GCTCGCAGACAACAGAGGGGAGACGAAAGGAAAAGGAAAGGGGAGATAGT
GATCACGTGAAAGTAGAATCTGGTTCTGCCCTTGGAATTGTGACAGACCC
TTCCCGTCCTCTTCCCTCCCCTTCCTTCTCCTCCTTCTCCCGAAAATAGA
GTACGGACAAGTACTACGTATGTTAGGCAATGGGCGATGCGAGGTGTATT
GCTTTGATGGGAAGAATCGCCTGGCGCACATTCGAGGGAAGATGCGCAAG
AAGGTGTGGGTATCAGCGGTGAGTATTTGGCGGCGTCCTGTTTGGTTGGA
AGGGGTGGAGTGATTGAGGTAGATGGGGGGGAAAGTCAGGGATGTTATTG
TCAACTCTGCCGGAAGATTTTTTTCTCTCAATATGTCCCTCCGCCTTTCT
GTTGTACTCCTTTGCTGTATCACAGGGTGATATTGTACTGCTGGGCATGC
GGGACTACCAGGAGGACAAGGTGGACATCATTCACAAGTACAACGCGGAC
GAGGCCCGGAACCTCAAGGCATTCGGTGAACTCCCAGAGACAGGTACGTG
TCTTTTATTTTTAATGTCTGGATTGGATTTCTGTGTGTTATCTTTAGGTG
ATGGGCAAAGGAAGGCGTGGTTTCAGGCACTCATTACCAGTACTCGTCCT
CCTTCCTTCCTCTCTCCCTCCCCCCTTCTGCTTTTCTAACAGCCAAGATC
AATGAGACGGCAATAGACTTGACAATGGAAGGCGGCTCCGACTCGGAGGA
CGAGATTGGCGTGGACTTTGACGAGGTTCGTTCCATGTCCTTTTCCCATC
CTGTTGAGTTTTTCCCCTACTCTCTTGTTATTGTGGTGACGAAACTGGAT
AAATTTGATTTCGAGAATTTCTCGTTCTTACTGGCTCCATTCTTTTGTAT
GAAACGCACAGATCTAA back to topCoding sequence (CDS) from alignment at chr5:991006..992872+ >NO05G03800.1 ID=NO05G03800.1|Name=NO05G03800.1|organism=Nannochloropsis oceanica|type=CDS|length=750bp|location=Sequence derived from alignment at chr5:991006..992872+ (Nannochloropsis oceanica) ATGCTGGTTGCAGCGGTGGCAGTGGAGTCGGCGACAGAGAAGGAAAAGGA ACGGCGGGGCACGGATCGTGATTGTTGTGGTTGTGGTGGCGGGGATGATG CCGTGGTGATGCTTCGCCAGCCGCAAGAAGATAGCGCGAGGGCTGAAGTC GACATAGCGGCCCTTGTGCTAGACGAGGACGACGAGACAGCACTCGTCCC TCGACGCACAGGACAAAACCCTTCGATCCATACCGCCTTGTTGCAGCACC AGACGCTTAACCCTTCTCTGAGCAGTCGGGAATTTCAAAAACAATACCAG CAGTACCTATATCAGACAGCAGCCATGCCCAAGAACAAGGGAAAGGGCGG CAAAAATCGGCGTCGAGGGAAGAACGAGAATGAGGAGACAAAGCGCGACC TGCTCTTCAAGGAGGAAGGCCAAGAGTACGGACAAGTACTACGTATGTTA GGCAATGGGCGATGCGAGGTGTATTGCTTTGATGGGAAGAATCGCCTGGC GCACATTCGAGGGAAGATGCGCAAGAAGGTGTGGGTATCAGCGGGTGATA TTGTACTGCTGGGCATGCGGGACTACCAGGAGGACAAGGTGGACATCATT CACAAGTACAACGCGGACGAGGCCCGGAACCTCAAGGCATTCGGTGAACT CCCAGAGACAGCCAAGATCAATGAGACGGCAATAGACTTGACAATGGAAG GCGGCTCCGACTCGGAGGACGAGATTGGCGTGGACTTTGACGAGATCTAA back to top
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