NO05G03800, NO05G03800 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G03800 vs. NCBI_GenBank
Match: EWM27963.1 (eukaryotic translation initiation factor 1a [Nannochloropsis gaditana] >EWM27964.1 eukaryotic translation initiation factor 1a [Nannochloropsis gaditana]) HSP 1 Score: 248.1 bits (632), Expect = 3.000e-62 Identity = 122/141 (86.52%), Postives = 125/141 (88.65%), Query Frame = 0 Query: 109 MPKNXXXXXXXXXXXXXXXXETKRDLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250 MPKN ETKRDLLFKEEGQEYGQV++MLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLT+EGGSDSEDEIGVDFDEI Sbjct: 1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFDEI 141
BLAST of NO05G03800 vs. NCBI_GenBank
Match: XP_009037765.1 (hypothetical protein AURANDRAFT_8202, partial [Aureococcus anophagefferens] >EGB07784.1 hypothetical protein AURANDRAFT_8202, partial [Aureococcus anophagefferens]) HSP 1 Score: 195.3 bits (495), Expect = 2.300e-46 Identity = 106/135 (78.52%), Postives = 117/135 (86.67%), Query Frame = 0 Query: 109 MPKNXXXXXXXXXXXXXXXXETKRDLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIG 244 MPKN XXXXXXXXXXXETKR L FKE GQEY QV+RMLGNGRCE YCFDG RL HIRGKMRKKVWVSAGDIVL+G+R+YQ+DKVDIIHKYNADEARNLK +GELPETA+INETA+D+ ME G D+ D+IG Sbjct: 1 MPKNKGKGGXXXXXXXXXXXETKRQLEFKEPGQEYSQVVRMLGNGRCECYCFDGVTRLGHIRGKMRKKVWVSAGDIVLVGLREYQDDKVDIIHKYNADEARNLKQYGELPETARINETAVDMAME-GDDANDDIG 134
BLAST of NO05G03800 vs. NCBI_GenBank
Match: CBJ29821.1 (Eukaryotic initiation factor 1 [Ectocarpus siliculosus]) HSP 1 Score: 192.2 bits (487), Expect = 1.900e-45 Identity = 108/141 (76.60%), Postives = 120/141 (85.11%), Query Frame = 0 Query: 109 MPKNXXXXXXXXXXXXXXXXETKRDLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250 MPKN XXXXXXXXXXXXX R+L FKE GQEY QV+RMLGNGR E YC+DG RL HIRGKMRKKVWVSAGDIVL+G RDYQ+DKVDIIH+YNADEARNLK +GELPE A+INETA+DL ME G +ED+IG+DFDEI Sbjct: 1 MPKNKGKXXXXXXXXXXXXXXXXRELEFKEAGQEYAQVVRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAME-GDGAEDDIGIDFDEI 140
BLAST of NO05G03800 vs. NCBI_GenBank
Match: EJK67933.1 (hypothetical protein THAOC_10956 [Thalassiosira oceanica]) HSP 1 Score: 189.9 bits (481), Expect = 9.600e-45 Identity = 85/121 (70.25%), Postives = 108/121 (89.26%), Query Frame = 0 Query: 129 ETKRDLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250 E+KR+L FKEEGQEY QV+RMLGNGRCE +C+DG RL HIRGKMRKK+W++AGDIVL+G RD+Q++KVDI+HKY+ADEARNLK +GELPETA+INETA+D M G ++ +D+IG+DFD+I Sbjct: 32 ESKRELEFKEEGQEYAQVVRMLGNGRCECFCYDGVTRLGHIRGKMRKKIWITAGDIVLVGKRDFQDEKVDILHKYSADEARNLKQYGELPETARINETAVDQAM-GSANDDDDIGIDFDDI 151
BLAST of NO05G03800 vs. NCBI_GenBank
Match: XP_002901172.1 (eukaryotic translation initiation factor 1A, putative [Phytophthora infestans T30-4] >XP_008900532.1 eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica INRA-310] >EEY59158.1 eukaryotic translation initiation factor 1A, putative [Phytophthora infestans T30-4] >ETI53748.1 eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica P1569] >ETK93629.1 eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica] >ETL47024.1 eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica] >ETM00122.1 eukaryotic translation initiation factor 1A, Y-chromosomal [Phytophthora parasitica] >ETM53303.1 eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica] >ETN14276.1 eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica INRA-310] >ETO82437.1 eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica P1976] >ETP23557.1 eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica CJ01A1] >ETP51568.1 eukaryotic translation initiation factor 1A, Y-chromosomal [Phytophthora parasitica P10297] >KUF79602.1 Eukaryotic translation initiation factor 1A [Phytophthora nicotianae] >KUF86765.1 Eukaryotic translation initiation factor 1A [Phytophthora nicotianae] >OWZ03659.1 Eukaryotic translation initiation factor 1A [Phytophthora megakarya] >POM58515.1 Eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora palmivora var. palmivora]) HSP 1 Score: 189.9 bits (481), Expect = 9.600e-45 Identity = 100/141 (70.92%), Postives = 115/141 (81.56%), Query Frame = 0 Query: 109 MPKNXXXXXXXXXXXXXXXXETKRDLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250 MPKN XXXXXXXX KR+L FKEEGQEY QV+RMLGNGR E YCFDG RL HIRGKMRKKVWV AGDI+L+ +R+YQ+ KVDIIHKYNADEAR+LKA+GELP+ A+INETA+D+ MEG D ED+IG DFD+I Sbjct: 1 MPKNKGKGGKNRXXXXXXXXXXKRELEFKEEGQEYAQVVRMLGNGRLEAYCFDGVTRLGHIRGKMRKKVWVGAGDIILVSLREYQDGKVDIIHKYNADEARSLKAYGELPDNARINETAVDMAMEG--DGEDDIGFDFDDI 139
BLAST of NO05G03800 vs. NCBI_GenBank
Match: XP_002177170.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC51633.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 189.1 bits (479), Expect = 1.600e-44 Identity = 84/121 (69.42%), Postives = 108/121 (89.26%), Query Frame = 0 Query: 129 ETKRDLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250 E+KR+L FKE+GQEY QV++MLGNGRCE +CFDG RL HIRGKMRKKVW++AGDIVL+ RD+Q++KVDI+HKY+ADEARNLK +GELPETA+INETA+D+ M G +++D+IG+DFD+I Sbjct: 16 ESKRELEFKEDGQEYAQVVKMLGNGRCECFCFDGVTRLGHIRGKMRKKVWITAGDIVLVAKRDFQDEKVDIVHKYSADEARNLKQYGELPETARINETAVDMAM-AGDENDDDIGIDFDDI 135
BLAST of NO05G03800 vs. NCBI_GenBank
Match: XP_002295854.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64571.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 183.3 bits (464), Expect = 9.000e-43 Identity = 84/116 (72.41%), Postives = 102/116 (87.93%), Query Frame = 0 Query: 134 LLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250 L FKEEGQEY QV+RMLGNGRCE +C+DG RL HIRGKMRKKVW++AGDIVL+G RD+Q++KVDI+HKY+ADEARNLK +GELPETA+INETA+D M G D +D+IG+DFD+I Sbjct: 26 LEFKEEGQEYAQVVRMLGNGRCECFCYDGVTRLGHIRGKMRKKVWITAGDIVLVGKRDFQDEKVDILHKYSADEARNLKQYGELPETARINETAVDQAMAGEGD-DDDIGIDFDDI 140
BLAST of NO05G03800 vs. NCBI_GenBank
Match: CCI44554.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 183.0 bits (463), Expect = 1.200e-42 Identity = 88/141 (62.41%), Postives = 107/141 (75.89%), Query Frame = 0 Query: 109 MPKNXXXXXXXXXXXXXXXXETKRDLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250 MPKN E KR+L FKE+GQ+Y QV+RMLGNGR E YCFDG RL HIRGKMRKKVWV AGDI+L+ +R+YQ+ KVDIIHKYNADEAR+LKA+GELPE+A+INET +DL+M+ ED+IG DF++I Sbjct: 1 MPKNKGKGGKNRRRGKNDNEENKRELEFKEDGQQYAQVVRMLGNGRLEAYCFDGVTRLGHIRGKMRKKVWVGAGDIILVSLREYQDGKVDIIHKYNADEARSLKAYGELPESARINETTMDLSMDA---DEDDIGFDFNDI 138
BLAST of NO05G03800 vs. NCBI_GenBank
Match: GAX10212.1 (translation initiation factor 1A [Fistulifera solaris]) HSP 1 Score: 183.0 bits (463), Expect = 1.200e-42 Identity = 83/116 (71.55%), Postives = 103/116 (88.79%), Query Frame = 0 Query: 134 LLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250 L FKE+GQEY QV++MLGNGRCE +CFDG RL HIRGKMRKKVW++AGDIVL+ RD+Q++KVDIIHKY+ADEARNLK +GELPETA+INETA+D+ M G +D +D+IG+DFD+I Sbjct: 26 LEFKEDGQEYAQVVKMLGNGRCECFCFDGVTRLGHIRGKMRKKVWITAGDIVLVAKRDFQDEKVDIIHKYSADEARNLKQYGELPETARINETAVDMAMAGDAD-DDDIGIDFDDI 140
BLAST of NO05G03800 vs. NCBI_GenBank
Match: XP_009520099.1 (hypothetical protein PHYSODRAFT_354005 [Phytophthora sojae] >EGZ24811.1 hypothetical protein PHYSODRAFT_354005 [Phytophthora sojae]) HSP 1 Score: 182.2 bits (461), Expect = 2.000e-42 Identity = 103/141 (73.05%), Postives = 118/141 (83.69%), Query Frame = 0 Query: 109 MPKNXXXXXXXXXXXXXXXXETKRDLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250 MPKN XXXXXXXXXXXXXX L FKEEGQEY QV+RMLGNGR E YCFDG RL HIRGKMRKKVWV AGDI+L+ +R+YQ+ KVDIIHKYNADEAR+LKA+GELP+ A+INETA+D+ ME +D ED+IG DFD+I Sbjct: 1 MPKNKGXXXXXXXXXXXXXXXXXXXLEFKEEGQEYAQVVRMLGNGRLEAYCFDGVTRLGHIRGKMRKKVWVGAGDIILVSLREYQDGKVDIIHKYNADEARSLKAYGELPDNARINETAVDMAME--NDGEDDIGFDFDDI 139 The following BLAST results are available for this feature:
BLAST of NO05G03800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G03800 ID=NO05G03800|Name=NO05G03800|organism=Nannochloropsis oceanica|type=gene|length=1867bpback to top protein sequence of NO05G03800.1 >NO05G03800.1-protein ID=NO05G03800.1-protein|Name=NO05G03800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=250bpback to top Synonyms
Publications
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