NO05G03800, NO05G03800 (gene) Nannochloropsis oceanica

Overview
NameNO05G03800
Unique NameNO05G03800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1867
Alignment locationchr5:991006..992872 +

Link to JBrowse

Properties
Property NameValue
DescriptionEukaryotic translation initiation factor 1a
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:991006..992872 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003743translation initiation factor activity
GO:0008135translation factor activity, RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR006196RNA-binding_domain_S1_IF1
IPR001253TIF_eIF-1A
Homology
BLAST of NO05G03800 vs. NCBI_GenBank
Match: EWM27963.1 (eukaryotic translation initiation factor 1a [Nannochloropsis gaditana] >EWM27964.1 eukaryotic translation initiation factor 1a [Nannochloropsis gaditana])

HSP 1 Score: 248.1 bits (632), Expect = 3.000e-62
Identity = 122/141 (86.52%), Postives = 125/141 (88.65%), Query Frame = 0
Query:  109 MPKNXXXXXXXXXXXXXXXXETKRDLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250
            MPKN                ETKRDLLFKEEGQEYGQV++MLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLT+EGGSDSEDEIGVDFDEI
Sbjct:    1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFDEI 141          
BLAST of NO05G03800 vs. NCBI_GenBank
Match: XP_009037765.1 (hypothetical protein AURANDRAFT_8202, partial [Aureococcus anophagefferens] >EGB07784.1 hypothetical protein AURANDRAFT_8202, partial [Aureococcus anophagefferens])

HSP 1 Score: 195.3 bits (495), Expect = 2.300e-46
Identity = 106/135 (78.52%), Postives = 117/135 (86.67%), Query Frame = 0
Query:  109 MPKNXXXXXXXXXXXXXXXXETKRDLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIG 244
            MPKN     XXXXXXXXXXXETKR L FKE GQEY QV+RMLGNGRCE YCFDG  RL HIRGKMRKKVWVSAGDIVL+G+R+YQ+DKVDIIHKYNADEARNLK +GELPETA+INETA+D+ ME G D+ D+IG
Sbjct:    1 MPKNKGKGGXXXXXXXXXXXETKRQLEFKEPGQEYSQVVRMLGNGRCECYCFDGVTRLGHIRGKMRKKVWVSAGDIVLVGLREYQDDKVDIIHKYNADEARNLKQYGELPETARINETAVDMAME-GDDANDDIG 134          
BLAST of NO05G03800 vs. NCBI_GenBank
Match: CBJ29821.1 (Eukaryotic initiation factor 1 [Ectocarpus siliculosus])

HSP 1 Score: 192.2 bits (487), Expect = 1.900e-45
Identity = 108/141 (76.60%), Postives = 120/141 (85.11%), Query Frame = 0
Query:  109 MPKNXXXXXXXXXXXXXXXXETKRDLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250
            MPKN   XXXXXXXXXXXXX   R+L FKE GQEY QV+RMLGNGR E YC+DG  RL HIRGKMRKKVWVSAGDIVL+G RDYQ+DKVDIIH+YNADEARNLK +GELPE A+INETA+DL ME G  +ED+IG+DFDEI
Sbjct:    1 MPKNKGKXXXXXXXXXXXXXXXXRELEFKEAGQEYAQVVRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAME-GDGAEDDIGIDFDEI 140          
BLAST of NO05G03800 vs. NCBI_GenBank
Match: EJK67933.1 (hypothetical protein THAOC_10956 [Thalassiosira oceanica])

HSP 1 Score: 189.9 bits (481), Expect = 9.600e-45
Identity = 85/121 (70.25%), Postives = 108/121 (89.26%), Query Frame = 0
Query:  129 ETKRDLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250
            E+KR+L FKEEGQEY QV+RMLGNGRCE +C+DG  RL HIRGKMRKK+W++AGDIVL+G RD+Q++KVDI+HKY+ADEARNLK +GELPETA+INETA+D  M G ++ +D+IG+DFD+I
Sbjct:   32 ESKRELEFKEEGQEYAQVVRMLGNGRCECFCYDGVTRLGHIRGKMRKKIWITAGDIVLVGKRDFQDEKVDILHKYSADEARNLKQYGELPETARINETAVDQAM-GSANDDDDIGIDFDDI 151          
BLAST of NO05G03800 vs. NCBI_GenBank
Match: XP_002901172.1 (eukaryotic translation initiation factor 1A, putative [Phytophthora infestans T30-4] >XP_008900532.1 eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica INRA-310] >EEY59158.1 eukaryotic translation initiation factor 1A, putative [Phytophthora infestans T30-4] >ETI53748.1 eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica P1569] >ETK93629.1 eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica] >ETL47024.1 eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica] >ETM00122.1 eukaryotic translation initiation factor 1A, Y-chromosomal [Phytophthora parasitica] >ETM53303.1 eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica] >ETN14276.1 eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica INRA-310] >ETO82437.1 eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica P1976] >ETP23557.1 eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica CJ01A1] >ETP51568.1 eukaryotic translation initiation factor 1A, Y-chromosomal [Phytophthora parasitica P10297] >KUF79602.1 Eukaryotic translation initiation factor 1A [Phytophthora nicotianae] >KUF86765.1 Eukaryotic translation initiation factor 1A [Phytophthora nicotianae] >OWZ03659.1 Eukaryotic translation initiation factor 1A [Phytophthora megakarya] >POM58515.1 Eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora palmivora var. palmivora])

HSP 1 Score: 189.9 bits (481), Expect = 9.600e-45
Identity = 100/141 (70.92%), Postives = 115/141 (81.56%), Query Frame = 0
Query:  109 MPKNXXXXXXXXXXXXXXXXETKRDLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250
            MPKN        XXXXXXXX  KR+L FKEEGQEY QV+RMLGNGR E YCFDG  RL HIRGKMRKKVWV AGDI+L+ +R+YQ+ KVDIIHKYNADEAR+LKA+GELP+ A+INETA+D+ MEG  D ED+IG DFD+I
Sbjct:    1 MPKNKGKGGKNRXXXXXXXXXXKRELEFKEEGQEYAQVVRMLGNGRLEAYCFDGVTRLGHIRGKMRKKVWVGAGDIILVSLREYQDGKVDIIHKYNADEARSLKAYGELPDNARINETAVDMAMEG--DGEDDIGFDFDDI 139          
BLAST of NO05G03800 vs. NCBI_GenBank
Match: XP_002177170.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC51633.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 189.1 bits (479), Expect = 1.600e-44
Identity = 84/121 (69.42%), Postives = 108/121 (89.26%), Query Frame = 0
Query:  129 ETKRDLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250
            E+KR+L FKE+GQEY QV++MLGNGRCE +CFDG  RL HIRGKMRKKVW++AGDIVL+  RD+Q++KVDI+HKY+ADEARNLK +GELPETA+INETA+D+ M  G +++D+IG+DFD+I
Sbjct:   16 ESKRELEFKEDGQEYAQVVKMLGNGRCECFCFDGVTRLGHIRGKMRKKVWITAGDIVLVAKRDFQDEKVDIVHKYSADEARNLKQYGELPETARINETAVDMAM-AGDENDDDIGIDFDDI 135          
BLAST of NO05G03800 vs. NCBI_GenBank
Match: XP_002295854.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64571.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 183.3 bits (464), Expect = 9.000e-43
Identity = 84/116 (72.41%), Postives = 102/116 (87.93%), Query Frame = 0
Query:  134 LLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250
            L FKEEGQEY QV+RMLGNGRCE +C+DG  RL HIRGKMRKKVW++AGDIVL+G RD+Q++KVDI+HKY+ADEARNLK +GELPETA+INETA+D  M G  D +D+IG+DFD+I
Sbjct:   26 LEFKEEGQEYAQVVRMLGNGRCECFCYDGVTRLGHIRGKMRKKVWITAGDIVLVGKRDFQDEKVDILHKYSADEARNLKQYGELPETARINETAVDQAMAGEGD-DDDIGIDFDDI 140          
BLAST of NO05G03800 vs. NCBI_GenBank
Match: CCI44554.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 183.0 bits (463), Expect = 1.200e-42
Identity = 88/141 (62.41%), Postives = 107/141 (75.89%), Query Frame = 0
Query:  109 MPKNXXXXXXXXXXXXXXXXETKRDLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250
            MPKN                E KR+L FKE+GQ+Y QV+RMLGNGR E YCFDG  RL HIRGKMRKKVWV AGDI+L+ +R+YQ+ KVDIIHKYNADEAR+LKA+GELPE+A+INET +DL+M+     ED+IG DF++I
Sbjct:    1 MPKNKGKGGKNRRRGKNDNEENKRELEFKEDGQQYAQVVRMLGNGRLEAYCFDGVTRLGHIRGKMRKKVWVGAGDIILVSLREYQDGKVDIIHKYNADEARSLKAYGELPESARINETTMDLSMDA---DEDDIGFDFNDI 138          
BLAST of NO05G03800 vs. NCBI_GenBank
Match: GAX10212.1 (translation initiation factor 1A [Fistulifera solaris])

HSP 1 Score: 183.0 bits (463), Expect = 1.200e-42
Identity = 83/116 (71.55%), Postives = 103/116 (88.79%), Query Frame = 0
Query:  134 LLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250
            L FKE+GQEY QV++MLGNGRCE +CFDG  RL HIRGKMRKKVW++AGDIVL+  RD+Q++KVDIIHKY+ADEARNLK +GELPETA+INETA+D+ M G +D +D+IG+DFD+I
Sbjct:   26 LEFKEDGQEYAQVVKMLGNGRCECFCFDGVTRLGHIRGKMRKKVWITAGDIVLVAKRDFQDEKVDIIHKYSADEARNLKQYGELPETARINETAVDMAMAGDAD-DDDIGIDFDDI 140          
BLAST of NO05G03800 vs. NCBI_GenBank
Match: XP_009520099.1 (hypothetical protein PHYSODRAFT_354005 [Phytophthora sojae] >EGZ24811.1 hypothetical protein PHYSODRAFT_354005 [Phytophthora sojae])

HSP 1 Score: 182.2 bits (461), Expect = 2.000e-42
Identity = 103/141 (73.05%), Postives = 118/141 (83.69%), Query Frame = 0
Query:  109 MPKNXXXXXXXXXXXXXXXXETKRDLLFKEEGQEYGQVLRMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI 250
            MPKN  XXXXXXXXXXXXXX     L FKEEGQEY QV+RMLGNGR E YCFDG  RL HIRGKMRKKVWV AGDI+L+ +R+YQ+ KVDIIHKYNADEAR+LKA+GELP+ A+INETA+D+ ME  +D ED+IG DFD+I
Sbjct:    1 MPKNKGXXXXXXXXXXXXXXXXXXXLEFKEEGQEYAQVVRMLGNGRLEAYCFDGVTRLGHIRGKMRKKVWVGAGDIILVSLREYQDGKVDIIHKYNADEARSLKAYGELPDNARINETAVDMAME--NDGEDDIGFDFDDI 139          
The following BLAST results are available for this feature:
BLAST of NO05G03800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27963.13.000e-6286.52eukaryotic translation initiation factor 1a [Nanno... [more]
XP_009037765.12.300e-4678.52hypothetical protein AURANDRAFT_8202, partial [Aur... [more]
CBJ29821.11.900e-4576.60Eukaryotic initiation factor 1 [Ectocarpus silicul... [more]
EJK67933.19.600e-4570.25hypothetical protein THAOC_10956 [Thalassiosira oc... [more]
XP_002901172.19.600e-4570.92eukaryotic translation initiation factor 1A, putat... [more]
XP_002177170.11.600e-4469.42predicted protein, partial [Phaeodactylum tricornu... [more]
XP_002295854.19.000e-4372.41predicted protein [Thalassiosira pseudonana CCMP13... [more]
CCI44554.11.200e-4262.41unnamed protein product [Albugo candida][more]
GAX10212.11.200e-4271.55translation initiation factor 1A [Fistulifera sola... [more]
XP_009520099.12.000e-4273.05hypothetical protein PHYSODRAFT_354005 [Phytophtho... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003476NSK003476Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03800.1NO05G03800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584875gene_3189Nannochloropsis oceanica (N. oceanica CCMP1779)gene
EIF1gene2544Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03800.1NO05G03800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03800 ID=NO05G03800|Name=NO05G03800|organism=Nannochloropsis oceanica|type=gene|length=1867bp
ATGCTGGTTGCAGCGGTGGCAGTGGAGTCGGCGACAGAGAAGGAAAAGGA
ACGGCGGGGCACGGATCGTGATTGTTGTGGTTGTGGTGGCGGGGATGATG
CCGTGGTGATGCTTCGCCAGCCGCAAGAAGATAGCGCGAGGGCTGAAGTC
GACATAGCGGCCCTTGTGCTAGACGAGGACGACGAGACAGCACTCGTCCC
TCgttgaacaagccgtctcaagagcatgacgacctacggcctgtgttggt
catggatgggttcggtcaaacaaagagcaaaagacgacagaatcgggcat
cagcaagcctcctcccctgggcgatgaccgaaggaggatgcaacggcgga
cgagcttccatgccttggcatgcgtatcgtgcgcgcgttccttgacccat
ggggtacaatctcgccaggcacacctttttgtagctcagtccatggtgat
gacgcggggttatgtggtttccaggccttgggtgtccgttgatcactccc
ctccctcctcccctaccctctcgcctcccccttcccatcccacaaaacct
cagGACGCACAGGACAAAACCCTTCGATCCATACCGCCTTGTTGCAGCAC
CAGACGCTTAACCCTTCTCTGAGCAGgtaagtcacttggtggatggcaca
gctaggtggctgagatgttgtgtctcgtgtttcccccgtcctgctagtca
caagcgatgcgcgtcgtggactgtggccatccctccctcactctctcacc
gctttctccaccctatccttataatcatacagTCGGGAATTTCAAAAACA
ATACCAGCAGTACCTATATCAGACAGCAGCCATGCCCAAGAACAAGGGAA
AGGGCGGCAAAAATCGGCGTCGAGGGAAGAACGAGAATGAGGAGACAAAG
CGCGACCTGCTCTTCAAGGAGGAAGGCCAAGgtccgtgggagcgcgcagt
gctcgcagacaacagaggggagacgaaaggaaaaggaaaggggagatagt
gatcacgtgaaagtagaatctggttctgcccttggaattgtgacagaccc
ttcccgtcctcttccctccccttccttctcctccttctcccgaaaatagA
GTACGGACAAGTACTACGTATGTTAGGCAATGGGCGATGCGAGGTGTATT
GCTTTGATGGGAAGAATCGCCTGGCGCACATTCGAGGGAAGATGCGCAAG
AAGGTGTGGGTATCAGCGgtgagtatttggcggcgtcctgtttggttgga
aggggtggagtgattgaggtagatgggggggaaagtcagggatgttattg
tcaactctgccggaagatttttttctctcaatatgtccctccgcctttct
gttgtactcctttgctgtatcacagGGTGATATTGTACTGCTGGGCATGC
GGGACTACCAGGAGGACAAGGTGGACATCATTCACAAGTACAACGCGGAC
GAGGCCCGGAACCTCAAGGCATTCGGTGAACTCCCAGAGACAGgtacgtg
tcttttatttttaatgtctggattggatttctgtgtgttatctttaggtg
atgggcaaaggaaggcgtggtttcaggcactcattaccagtactcgtcct
ccttccttcctctctccctccccccttctgcttttctaacagCCAAGATC
AATGAGACGGCAATAGACTTGACAATGGAAGGCGGCTCCGACTCGGAGGA
CGAGATTGGCGTGGACTTTGACGAGgttcgttccatgtccttttcccatc
ctgttgagtttttcccctactctcttgttattgtggtgacgaaactggat
aaatttgatttcgagaatttctcgttcttactggctccattcttttgtat
gaaacgcacagATCTAA
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protein sequence of NO05G03800.1

>NO05G03800.1-protein ID=NO05G03800.1-protein|Name=NO05G03800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MLVAAVAVESATEKEKERRGTDRDCCGCGGGDDAVVMLRQPQEDSARAEV
DIAALVLDEDDETALVPRRTGQNPSIHTALLQHQTLNPSLSSREFQKQYQ
QYLYQTAAMPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVLRML
GNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDII
HKYNADEARNLKAFGELPETAKINETAIDLTMEGGSDSEDEIGVDFDEI*
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Synonyms
Publications