NO05G03780, NO05G03780 (gene) Nannochloropsis oceanica

Overview
NameNO05G03780
Unique NameNO05G03780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3098
Alignment locationchr5:988468..991565 -

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Properties
Property NameValue
Description50s ribosomal protein l21
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:988468..991565 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR036164L21-like_sf
IPR028909L21p-like
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003723RNA binding
Homology
[Close]
BLAST of NO05G03780 vs. NCBI_GenBank
Match: EWM27986.1 (50s ribosomal protein l21 [Nannochloropsis gaditana])

HSP 1 Score: 240.4 bits (612), Expect = 5.800e-60
Identity = 122/160 (76.25%), Postives = 138/160 (86.25%), Query Frame = 0 
Query:   72 AATSMPRTSPPASMDQAPPAGPVHTRVLHPTGKGEGEAYGRLPVDVEALAAEGLEARFVVIDLKGKQYKVTKDDVIVSDKIEGLEPGYIFECAEVHLVGTPEYTIVGRPYVQNARVRLQVEEQAKDAKIIVFKKKRRKNYRRKQGFRREVTILRVLEIEE 232
            ++T  P TS P  M QAPPAGP +TRVLHPTGK  G  + R+PVD EALA+ GLEA+F VI++K KQYKVTKDD++VSDKIEGLEPG IF C  VHLVGTPEYT+VGRPYV++ARVRLQVEEQAKDAK+I+FKKKRRKNYRRKQGFRREVTILRVL IEE
Sbjct:   63 SSTPPPATS-PGLMGQAPPAGPKYTRVLHPTGKSRGWGFTRVPVDGEALASAGLEAKFAVIEVKSKQYKVTKDDIVVSDKIEGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRVLGIEE 221
[Close]
BLAST of NO05G03780 vs. NCBI_GenBank
Match: XP_009518630.1 (hypothetical protein PHYSODRAFT_344419 [Phytophthora sojae] >EGZ23342.1 hypothetical protein PHYSODRAFT_344419 [Phytophthora sojae])

HSP 1 Score: 115.9 bits (289), Expect = 1.600e-22
Identity = 63/116 (54.31%), Postives = 81/116 (69.83%), Query Frame = 0 
Query:  114 PVDVEALAAEGLEARFVVIDLKGKQYKVTKDDVIVSDKIEGLEPGYIFECAEVHLVGTPEYTIVGRPYVQNARVRLQVEEQAKDAKIIVFKKKRRKNYRRKQGFRREVTILRVLEI 230
            PV  +A+  E     F V+ L G QYKVT+ DV++++KI+  + G I +  EV L+G    TIVGRP V+ A+VR +VEEQ  DAKI VFKKKRRKNYRR  GFRR+VT+LRV +I
Sbjct:   43 PVTADAIKPEDY---FAVVKLAGTQYKVTQGDVVIAEKIKDAKVGEIMDIDEVLLLGNVNQTIVGRPLVEGAKVRARVEEQTLDAKIDVFKKKRRKNYRRWNGFRRQVTVLRVTDI 155
[Close]
BLAST of NO05G03780 vs. NCBI_GenBank
Match: POM67137.1 (Ribosomal protein L21 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 115.9 bits (289), Expect = 1.600e-22
Identity = 63/116 (54.31%), Postives = 81/116 (69.83%), Query Frame = 0 
Query:  114 PVDVEALAAEGLEARFVVIDLKGKQYKVTKDDVIVSDKIEGLEPGYIFECAEVHLVGTPEYTIVGRPYVQNARVRLQVEEQAKDAKIIVFKKKRRKNYRRKQGFRREVTILRVLEI 230
            PV  +A+  E     F V+ L G QYKVT+ DV++++KI+  + G I +  EV L+G    TIVGRP V+ A+VR +VEEQ  DAKI VFKKKRRKNYRR  GFRR+VT+LRV +I
Sbjct:   23 PVTADAIKPEDY---FAVVKLAGTQYKVTQGDVVIAEKIKDAKVGEIMDIDEVLLLGNVNQTIVGRPLVEGAKVRARVEEQTLDAKIDVFKKKRRKNYRRWNGFRRQVTVLRVTDI 135
[Close]
BLAST of NO05G03780 vs. NCBI_GenBank
Match: XP_008894967.1 (ribosomal protein L21 [Phytophthora parasitica INRA-310] >ETI38971.1 ribosomal protein L21 [Phytophthora parasitica P1569] >ETL32599.1 ribosomal protein L21 [Phytophthora parasitica] >ETM39007.1 ribosomal protein L21 [Phytophthora parasitica] >ETN19060.1 ribosomal protein L21 [Phytophthora parasitica INRA-310] >ETO67714.1 ribosomal protein L21 [Phytophthora parasitica P1976] >ETP36910.1 ribosomal protein L21 [Phytophthora parasitica P10297])

HSP 1 Score: 115.2 bits (287), Expect = 2.800e-22
Identity = 62/116 (53.45%), Postives = 81/116 (69.83%), Query Frame = 0 
Query:  114 PVDVEALAAEGLEARFVVIDLKGKQYKVTKDDVIVSDKIEGLEPGYIFECAEVHLVGTPEYTIVGRPYVQNARVRLQVEEQAKDAKIIVFKKKRRKNYRRKQGFRREVTILRVLEI 230
            PV  +A+  E     F V+ L G QYKVT+ DV++++KI+  + G I +  EV L+G    TIVGRP V+ A+VR +VEEQ  DAKI +FKKKRRKNYRR  GFRR+VT+LRV +I
Sbjct:   43 PVTADAIKPEDY---FAVVKLAGTQYKVTQGDVVITEKIKEAKVGEIMDIDEVLLLGNVNQTIVGRPIVEGAKVRARVEEQTLDAKIDIFKKKRRKNYRRWNGFRRQVTVLRVTDI 155
[Close]
BLAST of NO05G03780 vs. NCBI_GenBank
Match: ETK79175.1 (ribosomal protein L21 [Phytophthora parasitica] >ETP08883.1 ribosomal protein L21 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 115.2 bits (287), Expect = 2.800e-22
Identity = 62/116 (53.45%), Postives = 81/116 (69.83%), Query Frame = 0 
Query:  114 PVDVEALAAEGLEARFVVIDLKGKQYKVTKDDVIVSDKIEGLEPGYIFECAEVHLVGTPEYTIVGRPYVQNARVRLQVEEQAKDAKIIVFKKKRRKNYRRKQGFRREVTILRVLEI 230
            PV  +A+  E     F V+ L G QYKVT+ DV++++KI+  + G I +  EV L+G    TIVGRP V+ A+VR +VEEQ  DAKI +FKKKRRKNYRR  GFRR+VT+LRV +I
Sbjct:   43 PVTADAIKPEDY---FAVVKLAGTQYKVTQGDVVITEKIKEAKVGEIMDIDEVLLLGNVNQTIVGRPIVEGAKVRARVEEQTLDAKIDIFKKKRRKNYRRWNGFRRQVTVLRVTDI 155
[Close]
BLAST of NO05G03780 vs. NCBI_GenBank
Match: ETL85858.1 (ribosomal protein L21 [Phytophthora parasitica])

HSP 1 Score: 115.2 bits (287), Expect = 2.800e-22
Identity = 62/116 (53.45%), Postives = 81/116 (69.83%), Query Frame = 0 
Query:  114 PVDVEALAAEGLEARFVVIDLKGKQYKVTKDDVIVSDKIEGLEPGYIFECAEVHLVGTPEYTIVGRPYVQNARVRLQVEEQAKDAKIIVFKKKRRKNYRRKQGFRREVTILRVLEI 230
            PV  +A+  E     F V+ L G QYKVT+ DV++++KI+  + G I +  EV L+G    TIVGRP V+ A+VR +VEEQ  DAKI +FKKKRRKNYRR  GFRR+VT+LRV +I
Sbjct:   43 PVTADAIKPEDY---FAVVKLAGTQYKVTQGDVVITEKIKEAKVGEIMDIDEVLLLGNVNQTIVGRPIVEGAKVRARVEEQTLDAKIDIFKKKRRKNYRRWNGFRRQVTVLRVTDI 155
[Close]
BLAST of NO05G03780 vs. NCBI_GenBank
Match: KUF88049.1 (39S ribosomal protein L21 [Phytophthora nicotianae])

HSP 1 Score: 115.2 bits (287), Expect = 2.800e-22
Identity = 62/116 (53.45%), Postives = 81/116 (69.83%), Query Frame = 0 
Query:  114 PVDVEALAAEGLEARFVVIDLKGKQYKVTKDDVIVSDKIEGLEPGYIFECAEVHLVGTPEYTIVGRPYVQNARVRLQVEEQAKDAKIIVFKKKRRKNYRRKQGFRREVTILRVLEI 230
            PV  +A+  E     F V+ L G QYKVT+ DV++++KI+  + G I +  EV L+G    TIVGRP V+ A+VR +VEEQ  DAKI +FKKKRRKNYRR  GFRR+VT+LRV +I
Sbjct:   43 PVTADAIKPEDY---FAVVKLAGTQYKVTQGDVVITEKIKEAKVGEIMDIDEVLLLGNVNQTIVGRPIVEGAKVRARVEEQTLDAKIDIFKKKRRKNYRRWNGFRRQVTVLRVTDI 155
[Close]
BLAST of NO05G03780 vs. NCBI_GenBank
Match: KUF90967.1 (hypothetical protein AM588_10003114 [Phytophthora nicotianae])

HSP 1 Score: 115.2 bits (287), Expect = 2.800e-22
Identity = 62/116 (53.45%), Postives = 81/116 (69.83%), Query Frame = 0 
Query:  114 PVDVEALAAEGLEARFVVIDLKGKQYKVTKDDVIVSDKIEGLEPGYIFECAEVHLVGTPEYTIVGRPYVQNARVRLQVEEQAKDAKIIVFKKKRRKNYRRKQGFRREVTILRVLEI 230
            PV  +A+  E     F V+ L G QYKVT+ DV++++KI+  + G I +  EV L+G    TIVGRP V+ A+VR +VEEQ  DAKI +FKKKRRKNYRR  GFRR+VT+LRV +I
Sbjct:   31 PVTADAIKPEDY---FAVVKLAGTQYKVTQGDVVITEKIKEAKVGEIMDIDEVLLLGNVNQTIVGRPIVEGAKVRARVEEQTLDAKIDIFKKKRRKNYRRWNGFRRQVTVLRVTDI 143
[Close]
BLAST of NO05G03780 vs. NCBI_GenBank
Match: OWZ22036.1 (Ribosomal protein L21 [Phytophthora megakarya])

HSP 1 Score: 114.0 bits (284), Expect = 6.200e-22
Identity = 60/104 (57.69%), Postives = 76/104 (73.08%), Query Frame = 0 
Query:  126 EARFVVIDLKGKQYKVTKDDVIVSDKIEGLEPGYIFECAEVHLVGTPEYTIVGRPYVQNARVRLQVEEQAKDAKIIVFKKKRRKNYRRKQGFRREVTILRVLEI 230
            E  F V+ L G QYKVT+ DV++++KI+  + G I +  EV L+G    TIVGRP V+ A+VR +VEEQ  DAKI VFKKKRRKNYRR  GFRR+VT+LRV +I
Sbjct:   48 EDYFAVVKLAGTQYKVTQGDVVIAEKIKDAKVGEIMDIDEVLLLGNVNQTIVGRPLVEGAKVRARVEEQTLDAKIDVFKKKRRKNYRRWNGFRRQVTVLRVTDI 151
[Close]
BLAST of NO05G03780 vs. NCBI_GenBank
Match: GAX96968.1 (ribosomal protein L21 [Pythium insidiosum])

HSP 1 Score: 113.6 bits (283), Expect = 8.100e-22
Identity = 61/101 (60.40%), Postives = 74/101 (73.27%), Query Frame = 0 
Query:  129 FVVIDLKGKQYKVTKDDVIVSDKIEGLEPGYIFECAEVHLVGTPEYTIVGRPYVQNARVRLQVEEQAKDAKIIVFKKKRRKNYRRKQGFRREVTILRVLEI 230
            F VI L G QYKVT+ DV+VS+KI+  + G I +  +V L+G    TIVGRP V  A+VR +VEEQ  DAKI +FKKKRRKNYRR  GFRREVT+LRV +I
Sbjct:   65 FAVIKLGGTQYKVTQGDVVVSEKIKHAKVGEIMDIDDVLLLGNVNQTIVGRPLVDGAKVRARVEEQTLDAKIDIFKKKRRKNYRRWNGFRREVTVLRVTDI 165
The following BLAST results are available for this feature:
BLAST of NO05G03780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27986.15.800e-6076.2550s ribosomal protein l21 [Nannochloropsis gaditan... [more]
XP_009518630.11.600e-2254.31hypothetical protein PHYSODRAFT_344419 [Phytophtho... [more]
POM67137.11.600e-2254.31Ribosomal protein L21 [Phytophthora palmivora var.... [more]
XP_008894967.12.800e-2253.45ribosomal protein L21 [Phytophthora parasitica INR... [more]
ETK79175.12.800e-2253.45ribosomal protein L21 [Phytophthora parasitica] >E... [more]
ETL85858.12.800e-2253.45ribosomal protein L21 [Phytophthora parasitica][more]
KUF88049.12.800e-2253.4539S ribosomal protein L21 [Phytophthora nicotianae... [more]
KUF90967.12.800e-2253.45hypothetical protein AM588_10003114 [Phytophthora ... [more]
OWZ22036.16.200e-2257.69Ribosomal protein L21 [Phytophthora megakarya][more]
GAX96968.18.100e-2260.40ribosomal protein L21 [Pythium insidiosum][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03780.1NO05G03780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100008g26gene2543Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03780.1NO05G03780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03780 ID=NO05G03780|Name=NO05G03780|organism=Nannochloropsis oceanica|type=gene|length=3098bp
GTGCGTCCTGAGGTTTTGTGGGATGGGAAGGGGGAGGCGAGAGGGTAGGG
GAGGAGGGAGGGGAGTGATCAACGGACACCCAAGGCCTGGAAACCACATA
ACCCCGCGTCATCACCATGGACTGAGCTACAAAAAGGTGTGCCTGGCGAG
ATTGTACCCCATGGGTCAAGGAACGCGCGCACGATACGCATGCCAAGGCA
TGGAAGCTCGTCCGCCGTTGCATCCTCCTTCGGTCATCGCCCAGGGGAGG
AGGCTTGCTGATGCCCGATTCTGTCGTCTTTTGCTCTTTGTTTGACCGAA
CCCATCCATGACCAACACAGGCCGTAGGTCGTCATGCTCTTGAGACGGCT
TGTTCAACGAGGGACGAGTGCTGTCTCGTCGTCCTCGTCTAGCACAAGGG
CCGCTATGTCGACTTCAGCCCTCGCGCTATCTTCTTGCGGCTGGCGAAGC
ATCACCACGGCATCATCCCCGCCACCACAACCACAACAATCACGATCCGT
GCCCCGCCGTTCCTTTTCCTTCTCTGTCGCCGACTCCACTGCCACCGCTG
CAACCAGCATGCCAAGAACCTCTCCTCCCGCGTCCATGGACCAGGCACCG
CCGGCAGGGgtatgtgtgatgaagggcaaatgagtgcattatgtactgaa
actgcctttttatgttctctccatcctccctctcagatatttatcacaaa
acactctctccatcgatctcttttcacagCCTGTTCACACCCGCGTTCTT
CATCCGACGGGCAAAGGGGAAGGCGAGGCATATGGTCGTCTCCCTGTCGA
CGTTGAAGCGCTGGCAGCGGAGGGGCTAGAAGCTAGGTTTGTGGTGATTG
ACCTGAAAGGCAAGCAGTACAAGGTGACAAAAGATGACGTAATTGTCTCC
GATAAGATCGAGGGGTTGGAGCCGGGTTATATTTTTGAGTGTGCGGAAGT
GCATTTGGTGGGGACGCCAGAGTACACAATTGTTGGTCGGCCGTATGTGC
AGAATGCGCGTGTAAGACTACAGGTGGAGGAGCAAGCGAAGGATGCCAAA
ATCATCGTTTTTAAGAAAAAGCGGAGGAAAAACTATAGGCGGAAGCAGGG
GTTTAGAAGGGAGGTGACCATTTTGAGGGTTTTGGAAATTGAGGAGTAGT
GGGGAGGAAGGAGGGAGGGAGAGAGGGAGGGAGGGAGGAGAGGGGCACTG
AGAGGGGTGGGTGTCTTAACAAGAGGTAGAATACTGGAATAGGAAATGCT
TGACTGGCGACGCGTACATCCACTTCTTTTCTCACGTCCATTCGGTGTTC
TGTTGTTCTTTTCACTCTATTAAGGCCTCAATACCCCCTTGGCCTACCGA
CCCCATCGTCATGCTTTGTCGCTCGCTTTCTGTGTATCCCCAAGACGACC
CATGAGCGTTCCTGCTGCTGCTGCCGCTGTCAATTGTCACCTATCTCAGC
ATTCCTTCCTTTCCTCTATAATCCACATTTTCACTCATTCTAGCTATACT
ATAAACACAACCAGAGAGAGATGGAGAGAGAGAAGGGAGAAAGACATTGT
AATTTTTAATGACGTATTTCGTATTTTCCCTCCACTGCTCGCGTTGTCCC
TCTCGCCTTCCCTCTCCTTGTTTCCCTTTAATCTTCCACAAAACTGACAT
ACCGTGTATGTATGTGCATGTGTCTTTCTTCTTCCCCTCCTTCCCTCGCT
TGCATGCCCCTCGTCTTCCTCATCAGCTACAAGACCCTAGACCTCCCTTT
CCTCATATTGCACTTTCCTCCTCTCTACAAGTGCGATGCCCCCCCTACAA
GGGACAGCGCCAAATCCCTCTCTTCCACCAACTCGGTAACGGTCGACAAA
ACCCTGCGCCTCGTCTCCTCCGACAAGCTCAACCCCTCCACCACCTTCCA
CTGCCCACCCTTGCATTTCACAGGAAACGAAAAGAATATGTCCTCTGGGA
TGTCATATGTACAGTCCTTACTCACAAACACACCCATACTCACAAACTCC
CCCTCAGGCGTCCCATGCACCCAGTCCCTAACGTGTTTCGAAATCGCGCT
GGCAGCACTCAAGGCCGAGCTCAGTTTCCGGGCAGCCAAAATCTCCGCCC
CCCGCTGCTGTACGCTCGTGACCAACTGACCATGTAGCCACGCCGCGTCT
TTTTCTTGCAACACTTCGTGGATAGAAACCCATTTTCCCCCAAGCTCCAC
CTGGGCTTGGCCGGCAGACGGGACTTGCGTGCTGGAGTGATTGCCCCAAA
TAGCAACATTGCGAACCTGGGTGGCTGTGATGGCGGCGCTGCACTCCGGG
ATAGAAGAAGAGATGCGGAGGGAGGTGAGTTTCTTGGCCACCATGCCACG
GAGGCGATCGTGATCAAGGCGAGTCAAACACGAGAAGTTCTCCGCAGGCA
AGCTTGAGGCCCGCTTCTTCGCTACTAGTGCTAGAGTGTTGGCTGGATTG
GCCACCACCACAACCTTGACATCCCGGCTAGCGTGATCGTCCAGGGCGGC
GGCGTGCGTGGTTATGATCTCCACGTTCTTGGCGAGGAGTTCTTTGCGTT
CCATTCCTGGCAAGCGAGGGAACCCACCCAACAAAATCGCGTAGTCCACC
CCGGTAAAGGCCGTGCGTAAATCTGTTGTCGTCACCAAGCCCACGACGAC
GGGTGAGGCTGCGTCCTCAATCTCCATTTGCACGCCGCGCAGGGCGTTCT
CCGTCCCAGGGATGTCGAGCAAGTGCACGATCAAGCGGGTTTGGCAACCG
AAAACGCGCCCGCTAATGAGATGGGGGAGCAACGCATAGGCAATCTGGCC
TGCCCCCCCTGTAATCAAGACGCGCTTGGTCGCCGTGGGGGCCGAGTTAT
GCTCCTCGTGTCCGATCATTGTGTGTATGTTGCGTACCTTCGTACGTATA
CGTCTTTTTTCTTGGCTCGGTTTTCTCTCCTGCTGGTGCGTTGGTAGCGG
GGGGGAAATAATAGTGGTTTGGTGAGAGTGGTTTACTCTCTGATACTACC
AAGGAGAGTGTGATCGCCCCTGTCTGGGAAATGAGGTGCCTGATTGACTT
CGCTTCGCATGCACGCGGCGTCTGCGGGCAAGCAGAACGGTCCTCCTA
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protein sequence of NO05G03780.1

>NO05G03780.1-protein ID=NO05G03780.1-protein|Name=NO05G03780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MLLRRLVQRGTSAVSSSSSSTRAAMSTSALALSSCGWRSITTASSPPPQP
QQSRSVPRRSFSFSVADSTATAATSMPRTSPPASMDQAPPAGPVHTRVLH
PTGKGEGEAYGRLPVDVEALAAEGLEARFVVIDLKGKQYKVTKDDVIVSD
KIEGLEPGYIFECAEVHLVGTPEYTIVGRPYVQNARVRLQVEEQAKDAKI
IVFKKKRRKNYRRKQGFRREVTILRVLEIEE*
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Synonyms
Publications