NO05G03530, NO05G03530 (gene) Nannochloropsis oceanica

Overview
NameNO05G03530
Unique NameNO05G03530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1540
Alignment locationchr5:925707..927246 -

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Properties
Property NameValue
DescriptionEnhancer of rudimentary homolog
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:925707..927246 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0045747positive regulation of Notch signaling pathway
GO:0006221pyrimidine nucleotide biosynthetic process
GO:0007049cell cycle
GO:0009058biosynthetic process
GO:0007165signal transduction
GO:0007049cell cycle
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR035912EHR_sf
IPR000781Enh_rudimentary
Homology
[Close]
BLAST of NO05G03530 vs. NCBI_GenBank
Match: ETP40320.1 (hypothetical protein F442_12307, partial [Phytophthora parasitica P10297])

HSP 1 Score: 115.5 bits (288), Expect = 9.800e-23
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 0 
Query:    3 SRHTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIPHITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQAG 103
            ++HTI+LVQ TR   SRT+ DF +V   MD VVKMYE +LKQLNP + +ITYDI  L  ++D L D+SALV D  TK Y P  KEW+K K+++ LK QAG
Sbjct:    6 AKHTIILVQYTRDPNSRTYLDFESVNGGMDGVVKMYEAKLKQLNPNLKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQAG 105
[Close]
BLAST of NO05G03530 vs. NCBI_GenBank
Match: XP_024074602.1 (enhancer of rudimentary homolog isoform X1 [Terrapene mexicana triunguis])

HSP 1 Score: 115.5 bits (288), Expect = 9.800e-23
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 0 
Query:    1 MASRHTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIPHITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQA 102
            M+  HTILLVQPT+    RT+ D+ +V E M+ V KMYE+ LK++NP  P ITYDIS L  F+DDLAD+S LV+   T+ Y P++K+W+K KIY  L++QA
Sbjct:   21 MSMSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQA 121
[Close]
BLAST of NO05G03530 vs. NCBI_GenBank
Match: XP_003384593.1 (PREDICTED: enhancer of rudimentary homolog [Amphimedon queenslandica])

HSP 1 Score: 115.2 bits (287), Expect = 1.300e-22
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 0 
Query:    5 HTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIPHITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQAGGGR 106
            HTILL+QPTR   +RT+ D+ T+ E ++ + K+YE+ L+QL+P  P ITYDIS L +F+D+L D+S LV    +  YSPH+KEW+K KIY  LK+QAG  R
Sbjct:    3 HTILLIQPTRAHENRTYTDYETLDECLEGICKIYEEHLRQLHPQSPSITYDISELFKFIDNLHDLSCLVHQSSSGTYSPHNKEWLKEKIYGMLKKQAGPSR 103
[Close]
BLAST of NO05G03530 vs. NCBI_GenBank
Match: XP_004084440.1 (enhancer of rudimentary homolog [Oryzias latipes] >XP_024133892.1 enhancer of rudimentary homolog [Oryzias melastigma])

HSP 1 Score: 115.2 bits (287), Expect = 1.300e-22
Identity = 54/97 (55.67%), Postives = 71/97 (73.20%), Query Frame = 0 
Query:    5 HTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIPHITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQA 102
            HTILLVQPT+    RT+ DF +V E M+ V KMYE+ LK++NP  P ITYDIS L  F+DDLAD+S LV+   T+ Y P++K+W+K KIY  L++QA
Sbjct:    3 HTILLVQPTKRPEGRTYADFESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQA 99
[Close]
BLAST of NO05G03530 vs. NCBI_GenBank
Match: XP_009688181.1 (PREDICTED: enhancer of rudimentary homolog [Struthio camelus australis])

HSP 1 Score: 115.2 bits (287), Expect = 1.300e-22
Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 0 
Query:    2 ASRHTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIPHITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQA 102
            A  HTILLVQPT+    RT+ D+ +V E M+ V KMYE+ LK++NP  P ITYDIS L  F+DDLAD+S LV+   T+ Y P++K+W+K KIY  L++QA
Sbjct:   20 AQSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQA 119
[Close]
BLAST of NO05G03530 vs. NCBI_GenBank
Match: CBY08567.1 (unnamed protein product [Oikopleura dioica])

HSP 1 Score: 114.8 bits (286), Expect = 1.700e-22
Identity = 54/100 (54.00%), Postives = 73/100 (73.00%), Query Frame = 0 
Query:    3 SRHTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIPHITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQAG 103
            S HTILLVQPTR    RT+ D+ +V + M+ V K+YE+ LK+LNP+ P ITYDIS L  F+D+L+D+S LV+   T+ Y P++K+WVK KIY  L+ QAG
Sbjct:    2 SSHTILLVQPTRKPEGRTYSDYESVNDCMEGVCKIYEEHLKRLNPSSPQITYDISQLFDFIDELSDLSCLVYQKGTQTYLPYNKDWVKEKIYILLRNQAG 101
[Close]
BLAST of NO05G03530 vs. NCBI_GenBank
Match: ELK09895.1 (Enhancer of rudimentary like protein [Pteropus alecto])

HSP 1 Score: 114.8 bits (286), Expect = 1.700e-22
Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 0 
Query:    2 ASRHTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIPHITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQA 102
            A  HTILLVQPT+    RT+ D+ +V E M+ V KMYE+ LK++NP  P ITYDIS L  F+DDLAD+S LV+   T+ Y P++K+W+K KIY  L++QA
Sbjct:   64 ARSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQA 163
[Close]
BLAST of NO05G03530 vs. NCBI_GenBank
Match: XP_004477384.1 (enhancer of rudimentary homolog [Dasypus novemcinctus])

HSP 1 Score: 114.8 bits (286), Expect = 1.700e-22
Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 0 
Query:    2 ASRHTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIPHITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQA 102
            A  HTILLVQPT+    RT+ D+ +V E M+ V KMYE+ LK++NP  P ITYDIS L  F+DDLAD+S LV+   T+ Y P++K+W+K KIY  L++QA
Sbjct:   47 AMSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQA 146
[Close]
BLAST of NO05G03530 vs. NCBI_GenBank
Match: XP_537493.4 (enhancer of rudimentary homolog [Canis lupus familiaris])

HSP 1 Score: 114.8 bits (286), Expect = 1.700e-22
Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 0 
Query:    2 ASRHTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIPHITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQA 102
            A  HTILLVQPT+    RT+ D+ +V E M+ V KMYE+ LK++NP  P ITYDIS L  F+DDLAD+S LV+   T+ Y P++K+W+K KIY  L++QA
Sbjct:   52 AMSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQA 151
[Close]
BLAST of NO05G03530 vs. NCBI_GenBank
Match: XP_008698509.1 (PREDICTED: enhancer of rudimentary homolog [Ursus maritimus])

HSP 1 Score: 114.8 bits (286), Expect = 1.700e-22
Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 0 
Query:    2 ASRHTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIPHITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQA 102
            A  HTILLVQPT+    RT+ D+ +V E M+ V KMYE+ LK++NP  P ITYDIS L  F+DDLAD+S LV+   T+ Y P++K+W+K KIY  L++QA
Sbjct:   52 AMSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQA 151
The following BLAST results are available for this feature:
BLAST of NO05G03530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
ETP40320.19.800e-2356.00hypothetical protein F442_12307, partial [Phytopht... [more]
XP_024074602.19.800e-2353.47enhancer of rudimentary homolog isoform X1 [Terrap... [more]
XP_003384593.11.300e-2252.48PREDICTED: enhancer of rudimentary homolog [Amphim... [more]
XP_004084440.11.300e-2255.67enhancer of rudimentary homolog [Oryzias latipes] ... [more]
XP_009688181.11.300e-2254.00PREDICTED: enhancer of rudimentary homolog [Struth... [more]
CBY08567.11.700e-2254.00unnamed protein product [Oikopleura dioica][more]
ELK09895.11.700e-2254.00Enhancer of rudimentary like protein [Pteropus ale... [more]
XP_004477384.11.700e-2254.00enhancer of rudimentary homolog [Dasypus novemcinc... [more]
XP_537493.41.700e-2254.00enhancer of rudimentary homolog [Canis lupus famil... [more]
XP_008698509.11.700e-2254.00PREDICTED: enhancer of rudimentary homolog [Ursus ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003510NSK003510Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03530.1NO05G03530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584772gene_3162Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100044g9gene2513Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03530.1NO05G03530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03530 ID=NO05G03530|Name=NO05G03530|organism=Nannochloropsis oceanica|type=gene|length=1540bp
GGACGGGGGACACGGGGGGGTGAGGAGGTCAGACATGATCAACATATTTC
TCTCAAACGCATCCGTTTGCCAGCTGTGTACACAGCCTTTACCAGCTCTA
CCAGCTCCACCGGTGATGATATAGGCGTCCTCGCACAGATTGACCCTCTG
CTTGCGTGCTTAAACGGTACGATTCGGAACTCTGGGGCCTCGCCGCAGCG
AAGAAAATGAACTTGCCTCCGCAACCCGACACTCACATACGCCACACATC
ACACATACACACAAATTTGCAGGGCAAATGGCTTCTCGGCACACCATCCT
CCTGGTCCAGCCTACGCGTGTGGCGGCGTCCCGCACGTTCTTCGACTTCC
CCACGGTCTATGAGGCCATGGACGgtacgtaaagatagaaggcagcccct
ccccgtcctttctcccgtgcttccagtcccgtggtgcttgtgtgtatgct
cttccatgccttcgtgtaaggaatgaattttgctgcttcggatgtgcttg
ctttgctcggagttgcgacttcgtcggcaccatgagacccgccgagacag
agcagctccccgagcctagcttcccttctcttgcacttacttccaaaccc
acgttacctcctgagtaagagataattaaaacctgcctcctcgcttccat
tctattttggcaccaaaaaacacagAGGTAGTGAAGATGTACGAGAAACA
GCTCAAGCAACTAAACCCTACCATCCCGCATATAACCTATGACATCTCGg
tacgtcgttcttatggggtggtttgaaggcttggtcggacatgaatgtgt
gtatgcttcgtgcgttgacatcagcaatgaaatattaatatgagttcata
gatacgtatcgcaggggagaacattcctcactccattaatctaacgtctt
gtgtggtggtttgaagacatgtccagccacattaatcaaatgtttacaag
tgatgcgttgtgacacgaaaaggagaattgataaaacgttaaaaaaaaag
cttcaaactacgtatagcccgtggcttcggctccaagagcactgatcccc
catattctccacacctcatactctcgtcatgacagCACTTGCTGCGGTTC
GTGGATGACCTCGCCGACATCTCCGCCCTCGTgtaagtaccgaaaaaccc
gcttcatgtccagacctaaacagacatggatgtagtacactcctatatcg
gcacctataggcttattcttcttaccccctccctccctcagCTTTGATCC
CCGCACGAAGCAATACTCGCCGCACTCCAAAGAGTGGGTCAAGAGCAAGA
TCTACGAGAATTTGAAGCAGCAAGCCGGTGGGGGACGCTAGATGACGGAA
TGAAGGGAGGAAAGGAGGGACTGAGGGATTGTGAAGGATGGAGGAAGGGA
TGAGAATGAGCAGTGGATGAGGGGCGTGAGGTCAGGCGCCACGTTGGTCA
AGAGAGGGGGCATTAGATCGAAGAAATAGAAAGACAAGAAGAAGTAACAA
AAGATGAAGATGAATACGCTATATGCGGGTATCTGTATCT
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protein sequence of NO05G03530.1

>NO05G03530.1-protein ID=NO05G03530.1-protein|Name=NO05G03530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=106bp
MASRHTILLVQPTRVAASRTFFDFPTVYEAMDEVVKMYEKQLKQLNPTIP
HITYDISHLLRFVDDLADISALVFDPRTKQYSPHSKEWVKSKIYENLKQQ
AGGGR*
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Synonyms
Publications