NO05G03440, NO05G03440 (gene) Nannochloropsis oceanica

Overview
NameNO05G03440
Unique NameNO05G03440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2662
Alignment locationchr5:904086..906747 -

Link to JBrowse

Properties
Property NameValue
DescriptionFungal specific transcription
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:904086..906747 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006357regulation of transcription by RNA polymerase II
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
GO:0008270zinc ion binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
Vocabulary: INTERPRO
TermDefinition
IPR036864Zn2-C6_fun-type_DNA-bd_sf
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
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BLAST of NO05G03440 vs. NCBI_GenBank
Match: EWM28051.1 (fungal specific transcription [Nannochloropsis gaditana])

HSP 1 Score: 75.1 bits (183), Expect = 8.900e-10
Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = 0 
Query:  117 DQQERDEDEMSAAYSDVD--RLPPMPPSPIYSDINSEDSAMRTSCMSCRQSKVKCDKEYPCSRCIRLKRECIPQVRGVGRPHKHQSGSVPNSP--GSVSSRSVGS 218
            D  ER E E+ A Y + D  R P  P SP +S I+S+ + +R +C  CR+SKV+CD+ +PC RC+RL ++CIP +R  GR ++      P SP  G+   RSV S
Sbjct:   50 DDSER-EQEIFALYDEADGERCPSAPASPSHSGIDSDGALLRYTCKGCRKSKVRCDRVFPCQRCVRLGKKCIPHLRRNGRLNQF----APTSPCSGNDIKRSVVS 149
The following BLAST results are available for this feature:
BLAST of NO05G03440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28051.18.900e-1042.86fungal specific transcription [Nannochloropsis gad... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03440.1NO05G03440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03440.1NO05G03440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03440 ID=NO05G03440|Name=NO05G03440|organism=Nannochloropsis oceanica|type=gene|length=2662bp
TAGATACCCCATACTCACAGGTTTCGAAACGAGATCAGCCTCCGGGCCGT
GTGGAAGCGCCCCCTTCGCTTCTTCCAGgtgcgtcttaagtgtgtcaatt
ggattcccctccagcacaccaataaatggtgcttgctaatgcagcccttg
catggccggagccatgggaccccgcaacatctcatggcacaatcaaccac
gcaaacaatgcttatacccttttcgggcccaagttccttagcagggggct
caccagagctcacgtggctgctattgcgggccctagcggctgcacacatc
gtcctttcgtcttgtttgaatggacgggtgaagtatcgattggacacccg
aaagtgtgaagtgcaccactgtcgtacgctcttgtgattcaatatcaaac
ttaggcaatgcttcctgaggggtatgacgcagatgtggtcgttcgggtgg
catttcttcctaccacccgccttcctatttcgaagtagatttcgctctgt
gaccctgaacataatcatatgacttttctcaccctcacccacaagcataa
acactcggttcgtgtatacgtcaacacacactggcttccatgcagaccgt
tgccgttgcgatgcagtaacacgcacatggacaaggtggatgagagcgac
taccaccaagcatccactatcttcagaagcctcactcaccccgatcctta
ttttaaatcacatacacaccccgtagCAGCGGCCCTATGCCGGTCTCGCC
CACTCCTTCCCGGGACGTGAGCCTGGAAGGGGACGAGGACGATGAGGGTT
GTTACCCCGATTTTGAGTTCCAAGAGGAGCAAGAACGGGATCGCCTGCAG
CAATCCGCGCAGAAAGAGTATCCCCAGAGGTGGGATCTGCAGGAGCACCA
GCAACAGGGCCAGCAAGACAACAACGCCGATAACTGTCGGCATGAGGACG
AACAAGATGAGCATTGGCACGAGCATGGGACCTTTGACAACGACGGCCCT
CACTCCCTCTACGATGACGGCAACGATGGTGAGGCCGCTTCTCACTCCCT
CTACGATGGTGGCAACGGCAAGGAGACAATGGACGACCAACAAGAGCGAG
ACGAGGACGAGATGAGCGCCGCCTACTCGGACGTAGACCGGCTTCCCCCG
ATGCCCCCTTCCCCCATCTACTCTGACATAAACAGCGAGGACTCGGCCAT
GCGCACCTCGTGCATGAGCTGCCGTCAATCCAAGGTGAAGTGTGACAAGG
AGTACCCATGCTCCCGCTGCATCCGACTTAAGCGAGAGTGCATTCCCCAG
GTGCGCGGCGTGGGTAGGCCGCACAAGCATCAATCTGGCTCGGTGCCTAA
TTCTCCTGGGTCGGTCAGTAGCAGGAGCGTCGGCAGCTGGAAGCACACAC
CTCTTCCTCCTCTTTTTCTTCCTCCCCCTCCTCCTCCTCAACCTCACCTT
TCGTCTTTTTCGTCTTCTCCTCCTCCTTCTCATCCTCCCCTTCGTCCTCC
TCCTCCCTTCGTAACTGCTATCCCCCCATCTGTCTACCAAGATCATGCCC
GGGAGCAACAAGAGGAGGAGCGGCACCTATTTGAGCAGGTGGACCACCAC
CAGCAGCGACTGCAACAGCAACAGCAGCAACAGCTCCAGCAGCAACAGCA
AGACGACTTTGGCTACCAGCATCACCCACCAATCCCACCCGTCCAAGCAC
CCTTTCTCTCTCAGCCCGCTCGCCACTACTCCACCATGCCTCCCCCCTGT
TTCGGTGTACCCCCCCCCGAACTGCAAGCCCCCCGCCACTTTTGTCCCGC
GCCTCCTCCTCTCCCTCCTCCTTCCCACCCCATGTCTTCGTCCTCCTCCG
TTGCCTCCGTCTCGTCAACATCTTCCTCTTCCTCCGCTGCCTCCCATCCT
ACTGCCAGCTCAGCCTCTGCCTCCACAGGTTCAGCCGCCGCCGCGACAAC
AGCAGCAACAGCAACATCTGTGATAGCAGCACCAACACCAATACCAATAC
AAGGGAAACCTCGGCGCGGCCGCCCACCTGGCAGTATGAACAAGAATCCC
AAGACACCCAAATCAATCAAATCAGCCACCAGAACCACCACGGCGGCAGG
AGCAATGAAGGTGGGAGGGAAAGGTAAAGGCTCAAAAGGCAAGGCCGATA
TTTCCCGTCAACATGATCCTGCCACCGTCGTCGCCGCGAACAGTTGCAGC
GGCAGTAGTAGCAGCAGCGTCCTGGGCCTGCACCAGCAGCCAATGGTGCC
CCTCCTCCCTCTGTCGATCGAGGAGGAAGAAATGTCTACCTATAGACTTG
GAAACGGATTGCCTCCTGATGCTGCCACAGAGGTGCTGACGCCCACAAAT
ATTCCACTATCATCCATGGCTGTGCATGAGAAGCATTGGCAACATCAAAC
ACTCCTCACCCGTCCGCCCGCCGCAGCAGTACAAGCGCGAGGTGGTGGAA
AGGAAGCCCGGGGGGAGTGCAAAAGCAGCAGAAATAGCAGCAGTAGCAAT
GCTTCTCGTCCTCAACACTCGCTTTCCCTGCAGGCACCGCAGTCGAGCAT
GACGTCTTCGCACCAGCTGGACCAAGAGAAACAGCCCGCCCTGGGCCCCC
CTCAGCCCGCGACCACCACCTCCGCTCAGCCCCCCCCCTCCCTTGTCGTC
AAGTCGGTGTAA
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protein sequence of NO05G03440.1

>NO05G03440.1-protein ID=NO05G03440.1-protein|Name=NO05G03440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=642bp
MPVSPTPSRDVSLEGDEDDEGCYPDFEFQEEQERDRLQQSAQKEYPQRWD
LQEHQQQGQQDNNADNCRHEDEQDEHWHEHGTFDNDGPHSLYDDGNDGEA
ASHSLYDGGNGKETMDDQQERDEDEMSAAYSDVDRLPPMPPSPIYSDINS
EDSAMRTSCMSCRQSKVKCDKEYPCSRCIRLKRECIPQVRGVGRPHKHQS
GSVPNSPGSVSSRSVGSWKHTPLPPLFLPPPPPPQPHLSSFSSSPPPSHP
PLRPPPPFVTAIPPSVYQDHAREQQEEERHLFEQVDHHQQRLQQQQQQQL
QQQQQDDFGYQHHPPIPPVQAPFLSQPARHYSTMPPPCFGVPPPELQAPR
HFCPAPPPLPPPSHPMSSSSSVASVSSTSSSSSAASHPTASSASASTGSA
AAATTAATATSVIAAPTPIPIQGKPRRGRPPGSMNKNPKTPKSIKSATRT
TTAAGAMKVGGKGKGSKGKADISRQHDPATVVAANSCSGSSSSSVLGLHQ
QPMVPLLPLSIEEEEMSTYRLGNGLPPDAATEVLTPTNIPLSSMAVHEKH
WQHQTLLTRPPAAAVQARGGGKEARGECKSSRNSSSSNASRPQHSLSLQA
PQSSMTSSHQLDQEKQPALGPPQPATTTSAQPPPSLVVKSV*
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Synonyms
Publications