NO05G03200, NO05G03200 (gene) Nannochloropsis oceanica

Overview
NameNO05G03200
Unique NameNO05G03200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1456
Alignment locationchr5:830817..832272 +

Link to JBrowse

Properties
Property NameValue
DescriptionPentatricopeptide repeat containing protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:830817..832272 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
Homology
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_015897312.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g31920-like [Ziziphus jujuba])

HSP 1 Score: 71.2 bits (173), Expect = 9.300e-9
Identity = 74/321 (23.05%), Postives = 116/321 (36.14%), Query Frame = 0
Query:  137 IGTCVRA--GQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMAC-----------------------------------GKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACS---KPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418
            + TC  +  G +  A  +  Q+ E       P+   YN ++ G  +  +W QA     EML+  + PD  TY  LL AC                                   GK KE  +   +  Q++  K +  ++  IAA A  G W   L L   M+ E    P      + + AC+     D  + T +  LLR +    L V  +  +  + C  +         L   M K+                N  SY  +I  LA  G   + L V +EM KEGL PD ++Y   +     +      ++  N+M+
Sbjct:   80 VATCALSDWGSLDYACSIFQQIDE-------PDTFLYNTMIRGHVKGMNWGQALLLYHEMLERGVEPDNFTYPALLKACSLLRFLEDGKQIHGHIFKLGLQDDVFVQNSLINMYGKCKETDLSCAVFEQMN-QKTIASWSAIIAAHASLGMWSECLILFGDMRSEGYWRPEESILVSVLSACTHLGALDLGKCTHA-SLLRNINGLNLIVKTSLIDMYVKCGCLEKGLC----LFQNMNKK----------------NQLSYSVIISGLAMHGHGREALEVFKEMLKEGLAPDDVVYVGVLSACGHAGLVDEGLQFFNRMQ 371          
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_012082283.1 (pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas] >KDP29071.1 hypothetical protein JCGZ_16460 [Jatropha curcas])

HSP 1 Score: 70.9 bits (172), Expect = 1.200e-8
Identity = 60/290 (20.69%), Postives = 119/290 (41.03%), Query Frame = 0
Query:  128 PTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418
            P   +Y   +   ++ G++   I +L  +         P+H+TY  +V    RAG   +A+    EM +  +  +  TY  LL   G  ++         QID  K                       LL++M ++  ++P V +Y   +  C + D +    +L    EMR+KG+     +Y T +    ++ +  +A ++ DEM K+            R+  +  ++  L++   K G+ E+   ++E M + G  P++  Y+      A +  PG  + +  ++K
Sbjct:  384 PDCRIYTTLMKGYMKQGRVSDTIRMLEAMRHQDDNSSHPDHVTYTTVVSTLVRAGSMDRARQVLAEMTRIGVPANRITYNILLK--GHCQQ--------LQIDKAK----------------------ELLKEMTDDAEIQPDVVSYNTLIDGCIQVDDS--AGALAFFNEMRAKGIAPTKISYTTLMKAFALSGQPKLANQVFDEMFKD-----------PRVRVDLIAWNMLVEGFCKLGSIEEAKKIVERMKENGFYPNVATYSSLANGIALARKPGEALLLWKEVK 628          
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_021638471.1 (pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Hevea brasiliensis])

HSP 1 Score: 70.9 bits (172), Expect = 1.200e-8
Identity = 62/290 (21.38%), Postives = 117/290 (40.34%), Query Frame = 0
Query:  128 PTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418
            P   +Y   +   ++ G++   I +L  +         P+H+TY  +V    RAG   +A+    EM +  +  +  TY  LL        K    +L  QID  K                       LL++M ++  +EP V +Y   +  C + D +    +L    EMRSKG+     +Y T +    ++ +  +A ++ DEM K+            R+  +  ++  L++   K G  E+   +++ M + G  P++  Y       A +  PG  + +  ++K
Sbjct:  384 PDSRIYTTLMKGYMKQGRVSDTIRMLEAMRRQDDNASHPDHVTYTTVVSALVRAGSMDRARQVLAEMTRIGVPANRITYNILL--------KGYCQQL--QIDKAK----------------------ELLKEMADDAEIEPDVVSYNTLVDGCIQVDDS--AGALAFFNEMRSKGIAPTKISYTTLMKAFALSGQPKLANQVFDEMFKD-----------PRVKVDLIAWNMLVEGYCKLGLVEEAKKIIQRMKENGFYPNVATYCSLANGIALARKPGEALLLWKEVK 628          
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_021816644.1 (pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Prunus avium])

HSP 1 Score: 70.9 bits (172), Expect = 1.200e-8
Identity = 59/286 (20.63%), Postives = 116/286 (40.56%), Query Frame = 0
Query:  132 VYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418
            +Y   +   +  G++   + +L  L     +   P+H+TY  ++    +AG   +A+    EM +  +  +  TY  LL        K    +L  QID  K                       LLR+M ++ G+EP V +Y   +  C   D +    +L    EMR++GL     +Y T +    ++ +  +A ++ DEM  +            R+  +  ++  L+++  + G  E+   +++ +   G  PD+  Y       A +  PG  + + N++K
Sbjct:  380 IYTTLMKGYMNVGRVTDTVRMLEALRHQDNSSSHPDHVTYTTVISAFVKAGSMDRARRVLAEMTRVGVPANRITYNILL--------KGYCQQL--QIDQAK----------------------ELLREMADDAGIEPDVVSYNILIDGCILVDDS--AGALGFFNEMRTRGLAPTKISYTTLMKAFALSGQPKLANKVFDEMLND-----------PRVKADLVAWNMLVEAYCRMGLVEEAKKIIQRIKDNGFHPDVATYGSLANGIALARKPGEALLLWNEVK 620          
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_003064779.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH51113.1 predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 70.5 bits (171), Expect = 1.600e-8
Identity = 58/215 (26.98%), Postives = 93/215 (43.26%), Query Frame = 0
Query:  132 VYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARC----GDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKG--LPVGLTAYNTAILCA--GMAHETAVAQRLLDEMKKEG 339
            +Y+  I    RAG M  A    +++     + +V    +YN L+ G AR GDW  A +   E+    LRPD++T+  L+ A  +  + +   E+ + +   K +P  T    A   C    G W  A AL+ QM+ + G       Y A + A  + D  R  ESL     M+S+   LP  +T       C   GM ++      + D + + G
Sbjct:  610 LYHSVIAVAGRAGDMAHARAQFDRM-RGGDSRIVVTTFSYNCLLGGYARNGDWDGAAAVLAELKAAHLRPDSYTFTHLVSAAERGGKHEEADEIWTLMLASK-IPPNTVVCGAYVHCLGSQGRWMEAKALVDQMRNKWGAARNAAVYNALLGALVRAD--RLEESLSTFDAMQSEDGILPTEITFMLLVRACQDNGMVNKARELTAMRDALAETG 820          
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_007206428.1 (pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Prunus persica] >ONI03149.1 hypothetical protein PRUPE_6G241600 [Prunus persica])

HSP 1 Score: 70.5 bits (171), Expect = 1.600e-8
Identity = 59/286 (20.63%), Postives = 116/286 (40.56%), Query Frame = 0
Query:  132 VYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418
            +Y   +   +  G++   + +L  L     +   P+H+TY  ++    +AG   +A+    EM +  +  +  TY  LL        K    +L  QID  K                       LLR+M ++ G+EP V +Y   +  C   D +    +L    EMR++GL     +Y T +    ++ +  +A ++ DEM  +            R+  +  ++  L+++  + G  E+   +++ +   G  PD+  Y       A +  PG  + + N++K
Sbjct:  379 IYTTLMKGYMNVGRVTDTVRMLEALRHQDDSSSHPDHVTYTTVISAFVKAGSMDRARRVLAEMTRVGVPANRITYNILL--------KGYCQQL--QIDQAK----------------------ELLREMADDAGIEPDVVSYNILIDGCILVDDS--AGALGFFNEMRTRGLAPTKISYTTLMKAFALSGQPKLANKVFDEMLND-----------PRVKADLVAWNMLVEAYCRMGLVEEAKKIIQRIKDNGFHPDVATYGSLANGIALARKPGEALLLWNEVK 619          
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_008239177.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Prunus mume])

HSP 1 Score: 70.5 bits (171), Expect = 1.600e-8
Identity = 59/286 (20.63%), Postives = 116/286 (40.56%), Query Frame = 0
Query:  132 VYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418
            +Y   +   +  G++   + +L  L     +   P+H+TY  ++    +AG   +A+    EM +  +  +  TY  LL        K    +L  QID  K                       LLR+M ++ G+EP V +Y   +  C   D +    +L    EMR++GL     +Y T +    ++ +  +A ++ DEM  +            R+  +  ++  L+++  + G  E+   +++ +   G  PD+  Y       A +  PG  + + N++K
Sbjct:  366 IYTTLMKGYMNVGRVTDTVRMLEALRHQDDSSSHPDHVTYTTVISAFVKAGSMDRARRVLAEMTRVGVPANRITYNILL--------KGYCQQL--QIDQAK----------------------ELLREMADDAGIEPDVVSYNILIDGCILVDDS--AGALGFFNEMRTRGLAPTKISYTTLMKAFALSGQPKLANKVFDEMLND-----------PRVKADLVAWNMLVEAYCRMGLVEEAKKIIQRIKDNGFHPDVATYGSLANGIALARKPGEALLLWNEVK 606          
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_010920022.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g31920 [Elaeis guineensis])

HSP 1 Score: 69.7 bits (169), Expect = 2.700e-8
Identity = 69/299 (23.08%), Postives = 114/299 (38.13%), Query Frame = 0
Query:  101 DLARAAAASDAEKAVTALNKFPHMPAEPTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESL--DLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAM 398
            DL  A A SD      A + F  +  +P    +N  I   V+      A+ L     E Q+  V P++ T+   +   A+     +       + +     D      L+   GK  E K+   +  Q+   + V  ++  +AA  R G W   L L   M  E GL+    +  +A+ +C+         S+   LLR +    L V  +  +T + C  +    A+  R+ ++                    N  +Y  +I  LA  G  EK L V   M KEG+EPD ++Y   +
Sbjct:   69 DLLSACALSDWGSMDYAHSIFLTLD-DPGTFDFNTMIRAHVKDNDPEAALLLFK---EMQERSVRPDNFTFPFALKACAQLSAIEEGMQIHGHVTKLGFECDVFIQNSLINMYGKCGEIKLCCRVFGQMGSDRTVASWSAILAAHTRMGLWNECLKLFAMMMTE-GLKADESSMVSALSSCAHLGTYDLGRSIHCSLLRNITGLNLIVQTSLIDTYLKCGSLEKGMAIFDRMPEK--------------------NKWTYSAVISGLAMHGDGEKALQVFSNMLKEGIEPDEVVYVGVL 342          
BLAST of NO05G03200 vs. NCBI_GenBank
Match: BAE98745.1 (hypothetical protein, partial [Arabidopsis thaliana])

HSP 1 Score: 68.9 bits (167), Expect = 4.600e-8
Identity = 63/305 (20.66%), Postives = 118/305 (38.69%), Query Frame = 0
Query:  127 EPTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLD--LLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQM--KGAKQPDLRLY 428
            +P    +N  I   V      +A+   N++ +       P++ TY  L+    R     + +    ++ +  L  D      L+   G+  E ++ + +  +++  K    +++ ++A A  G W   L L R M  E  L+       +A+ AC+         S+   LLR +    + V  +  +  + C  +      A  +  +M+K                 NN +Y  +I  LA  G  E  L +  +M KEGLEPD ++Y   +   + S       R+  +M  +G  +P    Y
Sbjct:   94 DPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNE---PDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLES-KTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDK----ALHIFQKMEKR----------------NNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHY 374          
BLAST of NO05G03200 vs. NCBI_GenBank
Match: NP_174474.1 (Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana] >Q9C6T2.1 RecName: Full=Pentatricopeptide repeat-containing protein At1g31920 >AAG50713.1 PPR-repeat protein, putative [Arabidopsis thaliana] >AEE31416.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana])

HSP 1 Score: 68.9 bits (167), Expect = 4.600e-8
Identity = 63/305 (20.66%), Postives = 118/305 (38.69%), Query Frame = 0
Query:  127 EPTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLD--LLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQM--KGAKQPDLRLY 428
            +P    +N  I   V      +A+   N++ +       P++ TY  L+    R     + +    ++ +  L  D      L+   G+  E ++ + +  +++  K    +++ ++A A  G W   L L R M  E  L+       +A+ AC+         S+   LLR +    + V  +  +  + C  +      A  +  +M+K                 NN +Y  +I  LA  G  E  L +  +M KEGLEPD ++Y   +   + S       R+  +M  +G  +P    Y
Sbjct:   94 DPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNE---PDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLES-KTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDK----ALHIFQKMEKR----------------NNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHY 374          
The following BLAST results are available for this feature:
BLAST of NO05G03200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_015897312.19.300e-923.05PREDICTED: pentatricopeptide repeat-containing pro... [more]
XP_012082283.11.200e-820.69pentatricopeptide repeat-containing protein At3g09... [more]
XP_021638471.11.200e-821.38pentatricopeptide repeat-containing protein At3g09... [more]
XP_021816644.11.200e-820.63pentatricopeptide repeat-containing protein At3g09... [more]
XP_003064779.11.600e-826.98predicted protein [Micromonas pusilla CCMP1545] >E... [more]
XP_007206428.11.600e-820.63pentatricopeptide repeat-containing protein At3g09... [more]
XP_008239177.11.600e-820.63PREDICTED: pentatricopeptide repeat-containing pro... [more]
XP_010920022.12.700e-823.08PREDICTED: pentatricopeptide repeat-containing pro... [more]
BAE98745.14.600e-820.66hypothetical protein, partial [Arabidopsis thalian... [more]
NP_174474.14.600e-820.66Tetratricopeptide repeat (TPR)-like superfamily pr... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003545NSK003545Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03200.1NO05G03200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564904gene_3126Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100120g8gene2482Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03200.1NO05G03200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03200 ID=NO05G03200|Name=NO05G03200|organism=Nannochloropsis oceanica|type=gene|length=1456bp
ATGGAGCCATCCCTCATGCGGCAGATCCTGCGGCGGGTGCCGCCCCTAGC
AGGCCCGTCAATGCGACACACGACCGGAGTGCGGCCAAAATCGGTTGGGG
CAACCTCCCGGCGGTCATCCAACAACAGTCGTAGTCACAGCACCCTCTCT
AGGCTGCTGTCCACACCACCACTATCGGCCCAAATCTCCGCATCGCGTGC
GTTATCCTCCTCTTCCTCCTCTTCTTCCTCTTCCTCCCCACCTTTTTCTT
CAACCGCCTCCGCAACTGAAGGCAAGACGACCCTCCAAGCCCTCGTCCAA
GACCTCGCGCGTGCAGCAGCGGCTTCAGACGCAGAGAAGGCCGTGACAGC
CCTCAACAAATTCCCCCACATGCCTGCCGAGCCTACTATCCTTGTCTACA
ATGTTGCTATCGGTACCTGCGTGCGGGCCGGGCAAATGGGGAAAGCCATT
GGCCTGCTAAACCAGCTCTTTGAAAGCCAGAAAACGCATGTCGTCCCAAA
CCATCTCACCTACAACCTCTTAGTCTTCGGCGCCGCACGCGCGGGCGACT
GGACTCAAGCCCAAAGCTTTCGCGATGAAATGCTGCAGCATCAACTCCGC
CCGGACGCGCATACGTACCAAGGCTTGCTCATGGCATGTGGCAAGGCCAA
GGAAAAAAAAATGGTAGCAGAGCTCCTTAGTCAGATAGACGGACCGAAGC
TCGTCCCTATTTATACGACTGCCATTGCCGCCTCGGCCCGTTGCGGGGAC
TGGCAGGGTGCGCTAGCACTGCTCCGACAGATGAAGGAGGAAGATGGATT
GGAACCAGGGGTAGGTGCGTACCAAGCCGCTATGTTTGCTTGCTCGAAAC
CCGACCCAGCACGATGGACGGAGAGTCTGGATCTGTTGAGGGAGATGCGT
AGTAAAGGGTTACCTGTAGGACTGACGGCTTATAACACCGCTATTTTATG
TGCGGGGATGGCGCATGAGACGGCGGTAGCGCAGCGGTTGTTGGATGAGA
TGAAGAAGGAGGGTGGGCGGGAGGGGGGTGAGGAGGGAAAAGGGGGAAGG
CTGGTGCCGAATAATGGGAGCTATAGGGGTTTGATAAAAAGTTTGGCTAA
AGCGGGAGCTTATGAAAAATGTCTGGGGGTGCTGGAGGAGATGGCGAAGG
AGGGGTTGGAGCCTGATTTGTTATTGTACACAGATGCCATGGAGGTGTTT
GCGAGGAGTCACAACCCGGGGGCGACGATGAGGATTTTGAACCAAATGAA
GGGGGCGAAGCAACCGGATCTAAGGTTGTACCTAGCGCCATTAATTGATG
CAGATGAGGCGGCAGAAAGGCCGGTGGTGGAGATGTTCGTGAAGGAGGTG
GAGAAGTTGGGAGGGTTGCATGTGGCGGAGCAGGGAGGAGAGGGAGGGGG
GATGTGAGGGGGAAGGGAAGAAAGAGCAAAGAAGCAAGCGAAGTGCGAGT
GTGAGA
back to top

protein sequence of NO05G03200.1

>NO05G03200.1-protein ID=NO05G03200.1-protein|Name=NO05G03200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MEPSLMRQILRRVPPLAGPSMRHTTGVRPKSVGATSRRSSNNSRSHSTLS
RLLSTPPLSAQISASRALSSSSSSSSSSSPPFSSTASATEGKTTLQALVQ
DLARAAAASDAEKAVTALNKFPHMPAEPTILVYNVAIGTCVRAGQMGKAI
GLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLR
PDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGD
WQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMR
SKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGREGGEEGKGGR
LVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVF
ARSHNPGATMRILNQMKGAKQPDLRLYLAPLIDADEAAERPVVEMFVKEV
EKLGGLHVAEQGGEGGGM*
back to top
Synonyms
Publications