NO05G03200, NO05G03200 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_015897312.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g31920-like [Ziziphus jujuba]) HSP 1 Score: 71.2 bits (173), Expect = 9.300e-9 Identity = 74/321 (23.05%), Postives = 116/321 (36.14%), Query Frame = 0 Query: 137 IGTCVRA--GQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMAC-----------------------------------GKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACS---KPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418 + TC + G + A + Q+ E P+ YN ++ G + +W QA EML+ + PD TY LL AC GK KE + + Q++ K + ++ IAA A G W L L M+ E P + + AC+ D + T + LLR + L V + + + C + L M K+ N SY +I LA G + L V +EM KEGL PD ++Y + + ++ N+M+ Sbjct: 80 VATCALSDWGSLDYACSIFQQIDE-------PDTFLYNTMIRGHVKGMNWGQALLLYHEMLERGVEPDNFTYPALLKACSLLRFLEDGKQIHGHIFKLGLQDDVFVQNSLINMYGKCKETDLSCAVFEQMN-QKTIASWSAIIAAHASLGMWSECLILFGDMRSEGYWRPEESILVSVLSACTHLGALDLGKCTHA-SLLRNINGLNLIVKTSLIDMYVKCGCLEKGLC----LFQNMNKK----------------NQLSYSVIISGLAMHGHGREALEVFKEMLKEGLAPDDVVYVGVLSACGHAGLVDEGLQFFNRMQ 371
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_012082283.1 (pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas] >KDP29071.1 hypothetical protein JCGZ_16460 [Jatropha curcas]) HSP 1 Score: 70.9 bits (172), Expect = 1.200e-8 Identity = 60/290 (20.69%), Postives = 119/290 (41.03%), Query Frame = 0 Query: 128 PTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418 P +Y + ++ G++ I +L + P+H+TY +V RAG +A+ EM + + + TY LL G ++ QID K LL++M ++ ++P V +Y + C + D + +L EMR+KG+ +Y T + ++ + +A ++ DEM K+ R+ + ++ L++ K G+ E+ ++E M + G P++ Y+ A + PG + + ++K Sbjct: 384 PDCRIYTTLMKGYMKQGRVSDTIRMLEAMRHQDDNSSHPDHVTYTTVVSTLVRAGSMDRARQVLAEMTRIGVPANRITYNILLK--GHCQQ--------LQIDKAK----------------------ELLKEMTDDAEIQPDVVSYNTLIDGCIQVDDS--AGALAFFNEMRAKGIAPTKISYTTLMKAFALSGQPKLANQVFDEMFKD-----------PRVRVDLIAWNMLVEGFCKLGSIEEAKKIVERMKENGFYPNVATYSSLANGIALARKPGEALLLWKEVK 628
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_021638471.1 (pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Hevea brasiliensis]) HSP 1 Score: 70.9 bits (172), Expect = 1.200e-8 Identity = 62/290 (21.38%), Postives = 117/290 (40.34%), Query Frame = 0 Query: 128 PTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418 P +Y + ++ G++ I +L + P+H+TY +V RAG +A+ EM + + + TY LL K +L QID K LL++M ++ +EP V +Y + C + D + +L EMRSKG+ +Y T + ++ + +A ++ DEM K+ R+ + ++ L++ K G E+ +++ M + G P++ Y A + PG + + ++K Sbjct: 384 PDSRIYTTLMKGYMKQGRVSDTIRMLEAMRRQDDNASHPDHVTYTTVVSALVRAGSMDRARQVLAEMTRIGVPANRITYNILL--------KGYCQQL--QIDKAK----------------------ELLKEMADDAEIEPDVVSYNTLVDGCIQVDDS--AGALAFFNEMRSKGIAPTKISYTTLMKAFALSGQPKLANQVFDEMFKD-----------PRVKVDLIAWNMLVEGYCKLGLVEEAKKIIQRMKENGFYPNVATYCSLANGIALARKPGEALLLWKEVK 628
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_021816644.1 (pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Prunus avium]) HSP 1 Score: 70.9 bits (172), Expect = 1.200e-8 Identity = 59/286 (20.63%), Postives = 116/286 (40.56%), Query Frame = 0 Query: 132 VYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418 +Y + + G++ + +L L + P+H+TY ++ +AG +A+ EM + + + TY LL K +L QID K LLR+M ++ G+EP V +Y + C D + +L EMR++GL +Y T + ++ + +A ++ DEM + R+ + ++ L+++ + G E+ +++ + G PD+ Y A + PG + + N++K Sbjct: 380 IYTTLMKGYMNVGRVTDTVRMLEALRHQDNSSSHPDHVTYTTVISAFVKAGSMDRARRVLAEMTRVGVPANRITYNILL--------KGYCQQL--QIDQAK----------------------ELLREMADDAGIEPDVVSYNILIDGCILVDDS--AGALGFFNEMRTRGLAPTKISYTTLMKAFALSGQPKLANKVFDEMLND-----------PRVKADLVAWNMLVEAYCRMGLVEEAKKIIQRIKDNGFHPDVATYGSLANGIALARKPGEALLLWNEVK 620
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_003064779.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH51113.1 predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 70.5 bits (171), Expect = 1.600e-8 Identity = 58/215 (26.98%), Postives = 93/215 (43.26%), Query Frame = 0 Query: 132 VYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARC----GDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKG--LPVGLTAYNTAILCA--GMAHETAVAQRLLDEMKKEG 339 +Y+ I RAG M A +++ + +V +YN L+ G AR GDW A + E+ LRPD++T+ L+ A + + + E+ + + K +P T A C G W A AL+ QM+ + G Y A + A + D R ESL M+S+ LP +T C GM ++ + D + + G Sbjct: 610 LYHSVIAVAGRAGDMAHARAQFDRM-RGGDSRIVVTTFSYNCLLGGYARNGDWDGAAAVLAELKAAHLRPDSYTFTHLVSAAERGGKHEEADEIWTLMLASK-IPPNTVVCGAYVHCLGSQGRWMEAKALVDQMRNKWGAARNAAVYNALLGALVRAD--RLEESLSTFDAMQSEDGILPTEITFMLLVRACQDNGMVNKARELTAMRDALAETG 820
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_007206428.1 (pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Prunus persica] >ONI03149.1 hypothetical protein PRUPE_6G241600 [Prunus persica]) HSP 1 Score: 70.5 bits (171), Expect = 1.600e-8 Identity = 59/286 (20.63%), Postives = 116/286 (40.56%), Query Frame = 0 Query: 132 VYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418 +Y + + G++ + +L L + P+H+TY ++ +AG +A+ EM + + + TY LL K +L QID K LLR+M ++ G+EP V +Y + C D + +L EMR++GL +Y T + ++ + +A ++ DEM + R+ + ++ L+++ + G E+ +++ + G PD+ Y A + PG + + N++K Sbjct: 379 IYTTLMKGYMNVGRVTDTVRMLEALRHQDDSSSHPDHVTYTTVISAFVKAGSMDRARRVLAEMTRVGVPANRITYNILL--------KGYCQQL--QIDQAK----------------------ELLREMADDAGIEPDVVSYNILIDGCILVDDS--AGALGFFNEMRTRGLAPTKISYTTLMKAFALSGQPKLANKVFDEMLND-----------PRVKADLVAWNMLVEAYCRMGLVEEAKKIIQRIKDNGFHPDVATYGSLANGIALARKPGEALLLWNEVK 619
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_008239177.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Prunus mume]) HSP 1 Score: 70.5 bits (171), Expect = 1.600e-8 Identity = 59/286 (20.63%), Postives = 116/286 (40.56%), Query Frame = 0 Query: 132 VYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418 +Y + + G++ + +L L + P+H+TY ++ +AG +A+ EM + + + TY LL K +L QID K LLR+M ++ G+EP V +Y + C D + +L EMR++GL +Y T + ++ + +A ++ DEM + R+ + ++ L+++ + G E+ +++ + G PD+ Y A + PG + + N++K Sbjct: 366 IYTTLMKGYMNVGRVTDTVRMLEALRHQDDSSSHPDHVTYTTVISAFVKAGSMDRARRVLAEMTRVGVPANRITYNILL--------KGYCQQL--QIDQAK----------------------ELLREMADDAGIEPDVVSYNILIDGCILVDDS--AGALGFFNEMRTRGLAPTKISYTTLMKAFALSGQPKLANKVFDEMLND-----------PRVKADLVAWNMLVEAYCRMGLVEEAKKIIQRIKDNGFHPDVATYGSLANGIALARKPGEALLLWNEVK 606
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_010920022.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g31920 [Elaeis guineensis]) HSP 1 Score: 69.7 bits (169), Expect = 2.700e-8 Identity = 69/299 (23.08%), Postives = 114/299 (38.13%), Query Frame = 0 Query: 101 DLARAAAASDAEKAVTALNKFPHMPAEPTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESL--DLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAM 398 DL A A SD A + F + +P +N I V+ A+ L E Q+ V P++ T+ + A+ + + + D L+ GK E K+ + Q+ + V ++ +AA R G W L L M E GL+ + +A+ +C+ S+ LLR + L V + +T + C + A+ R+ ++ N +Y +I LA G EK L V M KEG+EPD ++Y + Sbjct: 69 DLLSACALSDWGSMDYAHSIFLTLD-DPGTFDFNTMIRAHVKDNDPEAALLLFK---EMQERSVRPDNFTFPFALKACAQLSAIEEGMQIHGHVTKLGFECDVFIQNSLINMYGKCGEIKLCCRVFGQMGSDRTVASWSAILAAHTRMGLWNECLKLFAMMMTE-GLKADESSMVSALSSCAHLGTYDLGRSIHCSLLRNITGLNLIVQTSLIDTYLKCGSLEKGMAIFDRMPEK--------------------NKWTYSAVISGLAMHGDGEKALQVFSNMLKEGIEPDEVVYVGVL 342
BLAST of NO05G03200 vs. NCBI_GenBank
Match: BAE98745.1 (hypothetical protein, partial [Arabidopsis thaliana]) HSP 1 Score: 68.9 bits (167), Expect = 4.600e-8 Identity = 63/305 (20.66%), Postives = 118/305 (38.69%), Query Frame = 0 Query: 127 EPTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLD--LLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQM--KGAKQPDLRLY 428 +P +N I V +A+ N++ + P++ TY L+ R + + ++ + L D L+ G+ E ++ + + +++ K +++ ++A A G W L L R M E L+ +A+ AC+ S+ LLR + + V + + + C + A + +M+K NN +Y +I LA G E L + +M KEGLEPD ++Y + + S R+ +M +G +P Y Sbjct: 94 DPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNE---PDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLES-KTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDK----ALHIFQKMEKR----------------NNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHY 374
BLAST of NO05G03200 vs. NCBI_GenBank
Match: NP_174474.1 (Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana] >Q9C6T2.1 RecName: Full=Pentatricopeptide repeat-containing protein At1g31920 >AAG50713.1 PPR-repeat protein, putative [Arabidopsis thaliana] >AEE31416.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]) HSP 1 Score: 68.9 bits (167), Expect = 4.600e-8 Identity = 63/305 (20.66%), Postives = 118/305 (38.69%), Query Frame = 0 Query: 127 EPTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLD--LLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQM--KGAKQPDLRLY 428 +P +N I V +A+ N++ + P++ TY L+ R + + ++ + L D L+ G+ E ++ + + +++ K +++ ++A A G W L L R M E L+ +A+ AC+ S+ LLR + + V + + + C + A + +M+K NN +Y +I LA G E L + +M KEGLEPD ++Y + + S R+ +M +G +P Y Sbjct: 94 DPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNE---PDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLES-KTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDK----ALHIFQKMEKR----------------NNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHY 374 The following BLAST results are available for this feature:
BLAST of NO05G03200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G03200 ID=NO05G03200|Name=NO05G03200|organism=Nannochloropsis oceanica|type=gene|length=1456bpback to top protein sequence of NO05G03200.1 >NO05G03200.1-protein ID=NO05G03200.1-protein|Name=NO05G03200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bpback to top Synonyms
Publications
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