NO05G03110, NO05G03110 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G03110 vs. NCBI_GenBank
Match: XP_010928662.1 (PREDICTED: probable small nuclear ribonucleoprotein F [Elaeis guineensis]) HSP 1 Score: 133.7 bits (335), Expect = 2.700e-28 Identity = 58/80 (72.50%), Postives = 69/80 (86.25%), Query Frame = 0 Query: 1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNVQLADTEEWIDGAMMGNLGEVLIRCNNVLYVRGAPDDD 81 M+ V VNPKPFL LTGKPV +KLKWGMEYKG L+SVD+Y N+QLA+TEE+IDG GNLGE+LIRCNNVLY+RG P+D+ Sbjct: 1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDE 80
BLAST of NO05G03110 vs. NCBI_GenBank
Match: XP_014678163.1 (PREDICTED: small nuclear ribonucleoprotein F, partial [Priapulus caudatus]) HSP 1 Score: 133.7 bits (335), Expect = 2.700e-28 Identity = 59/75 (78.67%), Postives = 67/75 (89.33%), Query Frame = 0 Query: 6 VNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNVQLADTEEWIDGAMMGNLGEVLIRCNNVLYVRGAPDDD 81 VNPKPFL GLTGKPV +KLKWGMEYKG L+SVD Y N+QLA+TEE+IDGA+ GNLGEVLIRCNNVLYVRG ++D Sbjct: 7 VNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIDGALTGNLGEVLIRCNNVLYVRGVEEED 81
BLAST of NO05G03110 vs. NCBI_GenBank
Match: XP_020576044.1 (probable small nuclear ribonucleoprotein F [Phalaenopsis equestris]) HSP 1 Score: 133.7 bits (335), Expect = 2.700e-28 Identity = 58/80 (72.50%), Postives = 69/80 (86.25%), Query Frame = 0 Query: 1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNVQLADTEEWIDGAMMGNLGEVLIRCNNVLYVRGAPDDD 81 M+ V VNPKPFL LTGKPV +KLKWGMEYKG L+SVD+Y N+QLA+TEE+IDG GNLGE+LIRCNNVLY+RG P+D+ Sbjct: 1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGEFSGNLGEILIRCNNVLYLRGVPEDE 80
BLAST of NO05G03110 vs. NCBI_GenBank
Match: WP_071414434.1 (hypothetical protein [Acinetobacter baumannii] >ABK22541.1 unknown [Picea sitchensis] >OIC70568.1 hypothetical protein A7L55_22440 [Acinetobacter baumannii]) HSP 1 Score: 133.3 bits (334), Expect = 3.600e-28 Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 0 Query: 1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNVQLADTEEWIDGAMMGNLGEVLIRCNNVLYVRGAPDDD 81 M+ V VNPKPFL LTGKPV +KLKWGMEYKG L+SVD+Y N+QLA TEE+IDG GNLGEVLIRCNNVLY+RG P+D+ Sbjct: 1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRCNNVLYLRGVPEDE 80
BLAST of NO05G03110 vs. NCBI_GenBank
Match: XP_008776020.1 (PREDICTED: probable small nuclear ribonucleoprotein F isoform X1 [Phoenix dactylifera]) HSP 1 Score: 133.3 bits (334), Expect = 3.600e-28 Identity = 58/80 (72.50%), Postives = 69/80 (86.25%), Query Frame = 0 Query: 1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNVQLADTEEWIDGAMMGNLGEVLIRCNNVLYVRGAPDDD 81 + AV VNPKPFL LTGKPV +KLKWGMEYKG L+SVD+Y N+QLA+TEE+IDG GNLGE+LIRCNNVLY+RG P+D+ Sbjct: 2 LQAVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYLRGVPEDE 81
BLAST of NO05G03110 vs. NCBI_GenBank
Match: XP_010914147.1 (PREDICTED: probable small nuclear ribonucleoprotein F isoform X1 [Elaeis guineensis]) HSP 1 Score: 133.3 bits (334), Expect = 3.600e-28 Identity = 58/80 (72.50%), Postives = 69/80 (86.25%), Query Frame = 0 Query: 1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNVQLADTEEWIDGAMMGNLGEVLIRCNNVLYVRGAPDDD 81 + AV VNPKPFL LTGKPV +KLKWGMEYKG L+SVD+Y N+QLA+TEE+IDG GNLGE+LIRCNNVLY+RG P+D+ Sbjct: 25 LQAVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYLRGVPEDE 104
BLAST of NO05G03110 vs. NCBI_GenBank
Match: XP_019707980.1 (PREDICTED: probable small nuclear ribonucleoprotein F isoform X2 [Elaeis guineensis]) HSP 1 Score: 133.3 bits (334), Expect = 3.600e-28 Identity = 58/80 (72.50%), Postives = 69/80 (86.25%), Query Frame = 0 Query: 1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNVQLADTEEWIDGAMMGNLGEVLIRCNNVLYVRGAPDDD 81 M+ V VNPKPFL LTGKPV +KLKWGMEYKG L+SVD+Y N+QLA+TEE+IDG GNLGE+LIRCNNVLY+RG P+D+ Sbjct: 1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYLRGVPEDE 80
BLAST of NO05G03110 vs. NCBI_GenBank
Match: XP_011427262.1 (PREDICTED: small nuclear ribonucleoprotein F [Crassostrea gigas] >XP_022300056.1 small nuclear ribonucleoprotein F [Crassostrea virginica] >XP_022301552.1 small nuclear ribonucleoprotein F [Crassostrea virginica]) HSP 1 Score: 133.3 bits (334), Expect = 3.600e-28 Identity = 58/80 (72.50%), Postives = 70/80 (87.50%), Query Frame = 0 Query: 1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNVQLADTEEWIDGAMMGNLGEVLIRCNNVLYVRGAPDDD 81 M+++ +NPKPFL GLTGKPV +KLKWGMEYKG L+SVD Y N+QLA+TEE+IDGA GNLGEVLIRCNNVLY+RG ++D Sbjct: 1 MASLPMNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIDGAQTGNLGEVLIRCNNVLYIRGVEEED 80
BLAST of NO05G03110 vs. NCBI_GenBank
Match: XP_020699046.1 (probable small nuclear ribonucleoprotein F isoform X1 [Dendrobium catenatum]) HSP 1 Score: 133.3 bits (334), Expect = 3.600e-28 Identity = 58/80 (72.50%), Postives = 69/80 (86.25%), Query Frame = 0 Query: 1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNVQLADTEEWIDGAMMGNLGEVLIRCNNVLYVRGAPDDD 81 M+ V VNPKPFL LTGKPV +KLKWGMEYKG L+SVD+Y N+QLA+TEE+IDG GNLGE+LIRCNNVLY+RG P+D+ Sbjct: 1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEFIDGQFSGNLGEILIRCNNVLYLRGVPEDE 80
BLAST of NO05G03110 vs. NCBI_GenBank
Match: PKA65432.1 (putative small nuclear ribonucleoprotein F [Apostasia shenzhenica]) HSP 1 Score: 133.3 bits (334), Expect = 3.600e-28 Identity = 58/80 (72.50%), Postives = 69/80 (86.25%), Query Frame = 0 Query: 1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNVQLADTEEWIDGAMMGNLGEVLIRCNNVLYVRGAPDDD 81 M +V VNPKPFL LTGKPV +KLKWGMEYKG L+SVD+Y N+QLA+TEE+IDG GNLGE+LIRCNNVLY+RG P+D+ Sbjct: 1 MQSVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYLRGVPEDE 80 The following BLAST results are available for this feature:
BLAST of NO05G03110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G03110 ID=NO05G03110|Name=NO05G03110|organism=Nannochloropsis oceanica|type=gene|length=2787bpback to top protein sequence of NO05G03110.2 >NO05G03110.2-protein ID=NO05G03110.2-protein|Name=NO05G03110.2|organism=Nannochloropsis oceanica|type=polypeptide|length=71bpback to top protein sequence of NO05G03110.1 >NO05G03110.1-protein ID=NO05G03110.1-protein|Name=NO05G03110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=84bpback to top Synonyms
Publications
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