NO05G03110.2, NO05G03110.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03110.2
Unique NameNO05G03110.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2459
Alignment locationchr5:801677..804463 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:801677..804463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03110.2 vs.
Match: EWM28091.1 (small nuclear ribonucleoprotein f [Nannochloropsis gaditana])

HSP 1 Score: 106.3 bits (264), Expect = 4.000e-20
Identity = 47/52 (90.38%), Postives = 51/52 (98.08%), Query Frame = 0 
Query:   19 GILLSVDNYYNVQLADTEEWIDGAMMGNLGEVLIRCNNVLYVRGAPDDDMDA 71
            GILLSVDNYYN+QLADTEEWIDGAM GNLGEVLIRCNNVLYVRGAP++DM+A
Sbjct:   32 GILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPEEDMEA 83
The following BLAST results are available for this feature:
BLAST of NO05G03110.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28091.14.000e-2090.38small nuclear ribonucleoprotein f [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03110NO05G03110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03110.2NO05G03110.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03110.2.cds1NO05G03110.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03110.2.cds2NO05G03110.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03110.2 ID=NO05G03110.2|Name=NO05G03110.2|organism=Nannochloropsis oceanica|type=mRNA|length=2459bp
TGGATCTTGTAAATCTAAGCCTGTGTTGTGGGTGCGTAAAGTGAGCAAGA
AGTCTTAAGCGATTTTGGAGAAGGGGCTCCTGAGAGCCTTGTATTATTCG
TGTTGCCCTCCCATTCCGAGTGACCATCCTGAGCCCTCAAGCCTATCACC
CATTCCGTTGCCACCATCACACGTACAGGATCTGAAAGTGCCACTCCTGT
AGCTGGCTGTCGACCATCCAGGGGGCTATGGTTTTCGTTGGGCTGGCACG
TGCACTGGTCGCCACTTGCTCGACACGGATATCGCACATCATCTAAGGCA
CCACTTTTTCTTTCGCTCACTCTGCTTGACCTTTACCCCACACATACACA
CCACAAATCAAAAGGGTAGCATCCAACATAATAGCTTCCCTATCAGAAGC
CCCTCGGTCAAATGTCGGCAGTGCTCGTGAACCCCAAGCCCTTCCTGCAA
GGCCTAACAGGCAAGCCAGTCTTCATCAAGCTTAAGTGGGGCATGGAGTA
CAAGGGTATGTCATGGTGTTTCTGGCTCTGTGAATGTACCTTTCCTTCTC
CCTTCCCTCCCATCTTAGCAGGACACCACCACCATCCTGCCAGTCGCGGC
GTATTATCTCACAGCTAATGCGATCAATGGTGCCATACCCTGCCGACATG
CGTGCATGTAATCGCCCTCTTTGTTCTTATCTGCACCTCCCCGCCGTGCT
ATGAAGACCATCCTACTCAAATCAATTTGTTCCTTACCTTGTTTTCCCAC
GTTAGGCATCCTTTTGTCTGTCGATAACTACTACAACGTGCAGCTGGCAG
ATACAGAGGAATGGATTGATGGAGCTATGATGGGAAATTTGGGGGAGGTG
CTCATCAGATGCAACAACGTGTTGTACGTGCGGGGCGCGCCGGATGACGA
CATGGACGCATAGAAGAGAAGGGTTGAGAAGAATGAAATTAAATAGCGCA
CAGAGAGGAAAGAGATGAGAAAGTGGAGCGTAGAGTGTGGTGTGTACGCT
TGGTGTGTAAAAGGCCAAAAGAGGAAGAAATAAAGGCAACGACGGGGAGT
TGAAAAAAAACCCAAAAAGCCTTGCTGAGACACAATTGACCGCTCGCTAC
GACCTGCTTTTTGCGGCTACGATTTACTACCTTTCCACTATTTCTTTCTG
CATTTAACGCCGATTTTGCTGTCTTTATTTGTCTATGTACACACACGTGC
GTATCTTCGTCCCGCCTCCCTCAAACCTTTTTATAATCATACTTGAGCTT
ATCCAATAAATCAATCTCTTTCGTCAATCTCCGCAAGTCCCTATCCACAT
GTAGGGAAACGGCCAGGACGAATAGAGCAGTGACAGGGAGCCACCAGAAA
CCAATGGCGGGGTAGGGTGTGTACTGATAGAAGACGCTGTAATCGTATGG
GTGATGAAGGTGCGGAGTAAGGGATCAAAGTGCCGCATGTTAGTGTGGGG
CGGGGAGATGTGGGTGGCCTCCCTTTCTTTTCCGTCTAAAGTTTCCTTGC
ACCAGCACAAGATCAGCAAGAAGCGACCAAGAAAGCAAGACCAAAGAACA
AGACCAAGAGAAAACATTTAAAAAAGACGTGTAAAATAGGATTTTACATT
TACTTCCATACCCGAGCCACGCGACGAGATTTAGAACGCCAACGCCGAAG
CCAAGGAAGAGGAGGGTCTTGTTTGGTCGGCCCTGTGTGTAAAGATAGAA
AAGGGTGGTTAGGAGCGAGGTTTGAAAACCGACAACATCATCCAAATCAA
TCCATCCAGGCTCCAATAAACGTACCGCAAACACCGAAATCGCCGCGACG
ACACACTGGACGTCTGCGAAATATGTGAGTAGAAAGCTGAAGGGGGAGAC
GGCAGACTGGAAAAAGGCTTGGTGCTCGAGGAAGTAGGGCATGGTCAGTG
TCATCGCGGTGCAGTAGATGAAGGCCAGGAGCAACAAAACATACAGTGCT
TGGAATAGCCGCTGCGTGAGGGGAAAGTAGGCAAGGGAGAAATGGCAAAG
GAGATGAGCGCAGAAGAAGGAAAGGCAACTGCAGGATGGGAGAAAGGAAA
GAAGGAAAATAGTAGGACTATGACTATCTAAGCCTGATCTCGCGTGGAGA
AAATTCTCTACCACTACCATCTACCTGCCTTTCAGGTAGACATCCGACAA
TCGATGGAACAAAAGGATAGCGTGCGGACCTGTCGTATCCTCTCTCAGCT
GCAGCACATTCTCACCAAATGCTTTGCCCCTCCCACCGTCCTTCTATCCG
ACCACCCATCTTACCCGCGTACTCTGACTTTGCTCCTCCCCTTTCCGCCG
CAGCTCTGCGATTAGCCTCGCCTGCTCGTCCTCGTCCAGCAAGTCGGGCT
GGTTCCCCTCGTCCTCGTCCCCCGCGTCCTCATTATCCCCGTCCTGCACG
GGCCGAGGTCGCCTTCTGTTGCTCATAGCTAATGTCGTGTGCCTGTGACC
GTGTTTTTC
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protein sequence of NO05G03110.2

>NO05G03110.2-protein ID=NO05G03110.2-protein|Name=NO05G03110.2|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MKTILLKSICSLPCFPTLGILLSVDNYYNVQLADTEEWIDGAMMGNLGEV
LIRCNNVLYVRGAPDDDMDA*
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mRNA from alignment at chr5:801677..804463-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03110.2 ID=NO05G03110.2|Name=NO05G03110.2|organism=Nannochloropsis oceanica|type=mRNA|length=2787bp|location=Sequence derived from alignment at chr5:801677..804463- (Nannochloropsis oceanica)
TGGATCTTGTAAATCTAAGCCTGTGTTGTGGGTGCGTAAAGTGAGCAAGA
AGTCTTAAGCGATTTTGGAGAAGGGGCTCCTGAGAGCCTTGTATTATTCG
TGTTGCCCTCCCATTCCGAGTGACCATCCTGAGCCCTCAAGCCTATCACC
CATTCCGTTGCCACCATCACACGTACAGGATCTGAAAGTGCCACTCCTGT
AGCTGGCTGTCGACCATCCAGGGGGCTATGGTTTTCGTTGGGCTGGCACG
TGCACTGGTCGCCACTTGCTCGACACGGATATCGCACATCATCTAAGGCA
CCACTTTTTCTTTCGCTCACTCTGCTTGACCTTTACCCCACACATACACA
CCACAAATCAAAAGGGTAGCATCCAACATAATAGCTTCCCTATCAGAAGC
CCCTCGGTCAAATGTCGGCAGTAAGTAGTGTAGCGGTGGATTTGGGACAG
ATTTTAACAACAGACTATCCTCCCACGCTCACGCCTTCCGACTCCCCACT
CGCACTCTATCACTTTATAGGTGCTCGTGAACCCCAAGCCCTTCCTGCAA
GGCCTAACAGGCAAGCCAGTCTTCATCAAGCTTAAGTGGGGCATGGAGTA
CAAGGGTATGTCATGGTGTTTCTGGCTCTGTGAATGTACCTTTCCTTCTC
CCTTCCCTCCCATCTTAGCAGGACACCACCACCATCCTGCCAGTCGCGGC
GTATTATCTCACAGCTAATGCGATCAATGGTGCCATACCCTGCCGACATG
CGTGCATGTAATCGCCCTCTTTGTTCTTATCTGCACCTCCCCGCCGTGCT
ATGAAGACCATCCTACTCAAATCAATTTGTTCCTTACCTTGTTTTCCCAC
GTTAGGCATCCTTTTGTCTGTCGATAACTACTACAACGTGCAGCTGGCAG
ATACAGAGGAATGGATTGATGGAGCTATGATGGGAAATTTGGGGGAGGTG
CTCATCAGGTATGAAGAACAGAAAGAAGGAAGACAGGAGAGGGAGACAGG
GTGAAAGGAGAAAGAGGAGACAGGGTGTAAGGAGAAAGAGGAGAGCAGGA
GCAGGAAGGGGAGGGTCGCTAAGGCAACGCTAAGTAAAAAGAATCGACGT
CTCACCCCCTCCCTTTCCTGCTCGCTCACACTCAAACACATACCCACCCC
TTCCCACGAATATGAAAACGAATATAAACGTGATAGATGCAACAACGTGT
TGTACGTGCGGGGCGCGCCGGATGACGACATGGACGCATAGAAGAGAAGG
GTTGAGAAGAATGAAATTAAATAGCGCACAGAGAGGAAAGAGATGAGAAA
GTGGAGCGTAGAGTGTGGTGTGTACGCTTGGTGTGTAAAAGGCCAAAAGA
GGAAGAAATAAAGGCAACGACGGGGAGTTGAAAAAAAACCCAAAAAGCCT
TGCTGAGACACAATTGACCGCTCGCTACGACCTGCTTTTTGCGGCTACGA
TTTACTACCTTTCCACTATTTCTTTCTGCATTTAACGCCGATTTTGCTGT
CTTTATTTGTCTATGTACACACACGTGCGTATCTTCGTCCCGCCTCCCTC
AAACCTTTTTATAATCATACTTGAGCTTATCCAATAAATCAATCTCTTTC
GTCAATCTCCGCAAGTCCCTATCCACATGTAGGGAAACGGCCAGGACGAA
TAGAGCAGTGACAGGGAGCCACCAGAAACCAATGGCGGGGTAGGGTGTGT
ACTGATAGAAGACGCTGTAATCGTATGGGTGATGAAGGTGCGGAGTAAGG
GATCAAAGTGCCGCATGTTAGTGTGGGGCGGGGAGATGTGGGTGGCCTCC
CTTTCTTTTCCGTCTAAAGTTTCCTTGCACCAGCACAAGATCAGCAAGAA
GCGACCAAGAAAGCAAGACCAAAGAACAAGACCAAGAGAAAACATTTAAA
AAAGACGTGTAAAATAGGATTTTACATTTACTTCCATACCCGAGCCACGC
GACGAGATTTAGAACGCCAACGCCGAAGCCAAGGAAGAGGAGGGTCTTGT
TTGGTCGGCCCTGTGTGTAAAGATAGAAAAGGGTGGTTAGGAGCGAGGTT
TGAAAACCGACAACATCATCCAAATCAATCCATCCAGGCTCCAATAAACG
TACCGCAAACACCGAAATCGCCGCGACGACACACTGGACGTCTGCGAAAT
ATGTGAGTAGAAAGCTGAAGGGGGAGACGGCAGACTGGAAAAAGGCTTGG
TGCTCGAGGAAGTAGGGCATGGTCAGTGTCATCGCGGTGCAGTAGATGAA
GGCCAGGAGCAACAAAACATACAGTGCTTGGAATAGCCGCTGCGTGAGGG
GAAAGTAGGCAAGGGAGAAATGGCAAAGGAGATGAGCGCAGAAGAAGGAA
AGGCAACTGCAGGATGGGAGAAAGGAAAGAAGGAAAATAGTAGGACTATG
ACTATCTAAGCCTGATCTCGCGTGGAGAAAATTCTCTACCACTACCATCT
ACCTGCCTTTCAGGTAGACATCCGACAATCGATGGAACAAAAGGATAGCG
TGCGGACCTGTCGTATCCTCTCTCAGCTGCAGCACATTCTCACCAAATGC
TTTGCCCCTCCCACCGTCCTTCTATCCGACCACCCATCTTACCCGCGTAC
TCTGACTTTGCTCCTCCCCTTTCCGCCGCAGCTCTGCGATTAGCCTCGCC
TGCTCGTCCTCGTCCAGCAAGTCGGGCTGGTTCCCCTCGTCCTCGTCCCC
CGCGTCCTCATTATCCCCGTCCTGCACGGGCCGAGGTCGCCTTCTGTTGC
TCATAGCTAATGTCGTGTGCCTGTGACCGTGTTTTTC
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Coding sequence (CDS) from alignment at chr5:801677..804463-

>NO05G03110.2 ID=NO05G03110.2|Name=NO05G03110.2|organism=Nannochloropsis oceanica|type=CDS|length=213bp|location=Sequence derived from alignment at chr5:801677..804463- (Nannochloropsis oceanica)
ATGAAGACCATCCTACTCAAATCAATTTGTTCCTTACCTTGTTTTCCCAC
GTTAGGCATCCTTTTGTCTGTCGATAACTACTACAACGTGCAGCTGGCAG
ATACAGAGGAATGGATTGATGGAGCTATGATGGGAAATTTGGGGGAGGTG
CTCATCAGATGCAACAACGTGTTGTACGTGCGGGGCGCGCCGGATGACGA
CATGGACGCATAG
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Synonyms
Publications