NO05G02450, NO05G02450 (gene) Nannochloropsis oceanica

Overview
NameNO05G02450
Unique NameNO05G02450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1148
Alignment locationchr5:652325..653472 +

Link to JBrowse

Properties
Property NameValue
Descriptionrelated to ubiquitin 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:652325..653472 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR000626Ubiquitin-like
IPR019956Ubiquitin
Homology
[Close]
BLAST of NO05G02450 vs. NCBI_GenBank
Match: XP_009531013.1 (hypothetical protein PHYSODRAFT_354994 [Phytophthora sojae] >EGZ13584.1 hypothetical protein PHYSODRAFT_354994 [Phytophthora sojae])

HSP 1 Score: 129.4 bits (324), Expect = 4.900e-27
Identity = 65/77 (84.42%), Postives = 69/77 (89.61%), Query Frame = 0 
Query:    1 MQILIKTLTGRKQSFNFEPEEKVEAVKQALQEKEGIQVDQIRLIYAGKQLADDKTLSFYNVVAGGTIHMVLQLRGGF 78
            MQI IKTLTGRKQ+FNFEP+  +  VKQALQEKEGIQVDQIRLIY+GKQLADDKTL  YNV AGGTIHMVLQLRGGF
Sbjct:    1 MQIQIKTLTGRKQTFNFEPDNTILHVKQALQEKEGIQVDQIRLIYSGKQLADDKTLQDYNVAAGGTIHMVLQLRGGF 77
[Close]
BLAST of NO05G02450 vs. NCBI_GenBank
Match: XP_008618993.1 (ubiquitin B [Saprolegnia diclina VS20] >XP_008911285.1 hypothetical protein PPTG_15737 [Phytophthora parasitica INRA-310] >XP_012205864.1 hypothetical protein SPRG_11466 [Saprolegnia parasitica CBS 223.65] >EQC27573.1 ubiquitin B [Saprolegnia diclina VS20] >ETI37963.1 hypothetical protein F443_16190 [Phytophthora parasitica P1569] >ETK78162.1 hypothetical protein L915_15751 [Phytophthora parasitica] >ETL31599.1 hypothetical protein L916_15640 [Phytophthora parasitica] >ETL84835.1 hypothetical protein L917_15458 [Phytophthora parasitica] >ETM37997.1 hypothetical protein L914_15594 [Phytophthora parasitica] >ETN03512.1 hypothetical protein PPTG_15737 [Phytophthora parasitica INRA-310] >ETO66734.1 hypothetical protein F444_16173 [Phytophthora parasitica P1976] >ETP07848.1 hypothetical protein F441_16018 [Phytophthora parasitica CJ01A1] >ETP35888.1 hypothetical protein F442_16041 [Phytophthora parasitica P10297] >KDO23374.1 hypothetical protein SPRG_11466 [Saprolegnia parasitica CBS 223.65] >OQR94248.1 ubiquitin [Achlya hypogyna] >GAY06234.1 ubiquitin putative [Pythium insidiosum] >GAY00895.1 ubiquitin putative [Pythium insidiosum] >POM63174.1 Ubiquitin-60S ribosomal protein L40 [Phytophthora palmivora var. palmivora] >POM72423.1 Ubiquitin-60S ribosomal protein L40 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 127.1 bits (318), Expect = 2.400e-26
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 
Query:    1 MQILIKTLTGRKQSFNFEPEEKVEAVKQALQEKEGIQVDQIRLIYAGKQLADDKTLSFYNVVAGGTIHMVLQLRGG 77
            MQI IKTLTGRKQ+FNFEP+  +  VKQALQEKEGIQVDQIRLIY+GKQLADDKTL  YNV AGGTIHMVLQLRGG
Sbjct:    1 MQIQIKTLTGRKQTFNFEPDNTILHVKQALQEKEGIQVDQIRLIYSGKQLADDKTLQDYNVAAGGTIHMVLQLRGG 76
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BLAST of NO05G02450 vs. NCBI_GenBank
Match: XP_008872213.1 (hypothetical protein H310_08295 [Aphanomyces invadans] >XP_009837017.1 hypothetical protein H257_11710 [Aphanomyces astaci] >ETV73591.1 hypothetical protein H257_11710 [Aphanomyces astaci] >ETV98785.1 hypothetical protein H310_08295 [Aphanomyces invadans])

HSP 1 Score: 127.1 bits (318), Expect = 2.400e-26
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 
Query:    1 MQILIKTLTGRKQSFNFEPEEKVEAVKQALQEKEGIQVDQIRLIYAGKQLADDKTLSFYNVVAGGTIHMVLQLRGG 77
            MQI IKTLTGRKQ+FNFEP+  +  VKQALQEKEGIQVDQIRLIY+GKQLADDKTL  YNV AGGTIHMVLQLRGG
Sbjct:    1 MQIQIKTLTGRKQTFNFEPDNTILHVKQALQEKEGIQVDQIRLIYSGKQLADDKTLQEYNVAAGGTIHMVLQLRGG 76
[Close]
BLAST of NO05G02450 vs. NCBI_GenBank
Match: XP_024573745.1 (ubiquitin-like protein nedd8 [Plasmopara halstedii] >CEG37376.1 ubiquitin-like protein nedd8 [Plasmopara halstedii])

HSP 1 Score: 124.8 bits (312), Expect = 1.200e-25
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = 0 
Query:    1 MQILIKTLTGRKQSFNFEPEEKVEAVKQALQEKEGIQVDQIRLIYAGKQLADDKTLSFYNVVAGGTIHMVLQLRGG 77
            MQI IKTLTGRKQ+FNFEP+  +  VKQALQEKEGIQVDQIRLIY+GKQLADDKTL  Y V AGGTIHMVLQLRGG
Sbjct:    1 MQIQIKTLTGRKQTFNFEPDNTILHVKQALQEKEGIQVDQIRLIYSGKQLADDKTLQDYTVAAGGTIHMVLQLRGG 76
[Close]
BLAST of NO05G02450 vs. NCBI_GenBank
Match: OEU18894.1 (putative ubiquitin-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 124.8 bits (312), Expect = 1.200e-25
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 0 
Query:    1 MQILIKTLTGRKQSFNFEPEEKVEAVKQALQEKEGIQVDQIRLIYAGKQLADDKTLSFYNVVAGGTIHMVLQLRGG 77
            MQI IKTLTGRKQ+ NFEPE +V AVKQ+LQEKEGIQVDQIRLI++GKQLADDKTL  YN+ AG TIHMVLQLRGG
Sbjct:    1 MQIFIKTLTGRKQAMNFEPENQVLAVKQSLQEKEGIQVDQIRLIHSGKQLADDKTLESYNIAAGATIHMVLQLRGG 76
[Close]
BLAST of NO05G02450 vs. NCBI_GenBank
Match: CBN73935.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 123.2 bits (308), Expect = 3.500e-25
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 0 
Query:    1 MQILIKTLTGRKQSFNFEPEEKVEAVKQALQEKEGIQVDQIRLIYAGKQLADDKTLSFYNVVAGGTIHMVLQLRGG 77
            MQI IKTLTGRKQ ++FEP+ +V  VKQ+LQEKEGIQVDQIRLIY+GKQLADD TLS YNV  GGTIHMVLQLRGG
Sbjct:    1 MQIWIKTLTGRKQQYSFEPDNQVSMVKQSLQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGG 76
[Close]
BLAST of NO05G02450 vs. NCBI_GenBank
Match: CCI48670.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 121.3 bits (303), Expect = 1.300e-24
Identity = 61/78 (78.21%), Postives = 69/78 (88.46%), Query Frame = 0 
Query:    1 MQILIKTLTGRKQSFNFEPEEKVEAVKQALQEKEGIQVDQIRLIYAGKQLADDKTLSFYNVVAGGTIHMVLQLRGGFK 79
            MQI IKTLTGRKQ+FNFE E  +  VK+ALQEKEGIQV+QIRLIY+G+QL+DDKTL  YNV+AGGTIHMVLQLRGG K
Sbjct:    1 MQITIKTLTGRKQTFNFEGENTILHVKEALQEKEGIQVNQIRLIYSGRQLSDDKTLQDYNVLAGGTIHMVLQLRGGQK 78
[Close]
BLAST of NO05G02450 vs. NCBI_GenBank
Match: GAX29023.1 (hypothetical protein FisN_7Hh386 [Fistulifera solaris] >GAX11282.1 hypothetical protein FisN_7Lh386 [Fistulifera solaris])

HSP 1 Score: 120.9 bits (302), Expect = 1.700e-24
Identity = 59/76 (77.63%), Postives = 68/76 (89.47%), Query Frame = 0 
Query:    1 MQILIKTLTGRKQSFNFEPEEKVEAVKQALQEKEGIQVDQIRLIYAGKQLADDKTLSFYNVVAGGTIHMVLQLRGG 77
            MQI IKTLTGRKQ+ NFEP++ V A+KQALQEKEGIQVDQI+LIY+GKQLADDK+L  Y++ AG TIHMVLQLRGG
Sbjct:    1 MQIFIKTLTGRKQALNFEPDQHVLAIKQALQEKEGIQVDQIKLIYSGKQLADDKSLESYSISAGATIHMVLQLRGG 76
[Close]
BLAST of NO05G02450 vs. NCBI_GenBank
Match: XP_002286655.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED96296.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 120.2 bits (300), Expect = 3.000e-24
Identity = 60/75 (80.00%), Postives = 67/75 (89.33%), Query Frame = 0 
Query:    2 QILIKTLTGRKQSFNFEPEEKVEAVKQALQEKEGIQVDQIRLIYAGKQLADDKTLSFYNVVAGGTIHMVLQLRGG 77
            QI IKTLTGRKQ+FNFEPE +V AVKQALQEKEGIQVDQIRLI++GKQL+DD+TL  Y + AG TIHMVLQLRGG
Sbjct:    1 QIFIKTLTGRKQAFNFEPENQVLAVKQALQEKEGIQVDQIRLIFSGKQLSDDRTLESYAINAGATIHMVLQLRGG 75
[Close]
BLAST of NO05G02450 vs. NCBI_GenBank
Match: XP_009036136.1 (hypothetical protein AURANDRAFT_17032, partial [Aureococcus anophagefferens] >EGB09007.1 hypothetical protein AURANDRAFT_17032, partial [Aureococcus anophagefferens])

HSP 1 Score: 119.8 bits (299), Expect = 3.900e-24
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = 0 
Query:    2 QILIKTLTGRKQSFNFEPEEKVEAVKQALQEKEGIQVDQIRLIYAGKQLADDKTLSFYNVVAGGTIHMVLQLRGG 77
            QI IKTLTGRKQ+   EP ++V  +KQ+LQEKEGIQVDQIRLIY+GKQLADDK + FYN+ AGGTIHMVLQLRGG
Sbjct:    1 QIFIKTLTGRKQAMTLEPSDEVRTIKQSLQEKEGIQVDQIRLIYSGKQLADDKKIEFYNIQAGGTIHMVLQLRGG 75
The following BLAST results are available for this feature:
BLAST of NO05G02450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009531013.14.900e-2784.42hypothetical protein PHYSODRAFT_354994 [Phytophtho... [more]
XP_008618993.12.400e-2684.21ubiquitin B [Saprolegnia diclina VS20] >XP_0089112... [more]
XP_008872213.12.400e-2684.21hypothetical protein H310_08295 [Aphanomyces invad... [more]
XP_024573745.11.200e-2582.89ubiquitin-like protein nedd8 [Plasmopara halstedii... [more]
OEU18894.11.200e-2581.58putative ubiquitin-like protein [Fragilariopsis cy... [more]
CBN73935.13.500e-2580.26conserved unknown protein [Ectocarpus siliculosus][more]
CCI48670.11.300e-2478.21unnamed protein product [Albugo candida][more]
GAX29023.11.700e-2477.63hypothetical protein FisN_7Hh386 [Fistulifera sola... [more]
XP_002286655.13.000e-2480.00predicted protein, partial [Thalassiosira pseudona... [more]
XP_009036136.13.900e-2476.00hypothetical protein AURANDRAFT_17032, partial [Au... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL083nonsL083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR121ngnoR121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003580NSK003580Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02450.1NO05G02450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|540028gene_3046Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02450.1NO05G02450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02450 ID=NO05G02450|Name=NO05G02450|organism=Nannochloropsis oceanica|type=gene|length=1148bp
CCCCTTGCGTCCTTTCCGTGTTCGTCATCCAAAGTAACCCCAATCCACAC
ACACAATACTCCCCACAGGCAAGGAGCGGTTTCAAATAGCATCAACGACG
GGAAAGGATGCAGgttcgtgtgcttgtcggtggcttttgcactctccaat
ttgtagattgtatgccccctctcatcatcatcgctgttcctccccgggga
gggcttccacgtgccaataatatcagctctcacattcgcctccatctctt
ccccaccccgcacgttatcacaacactctacatcgggtactgtccacacc
gccgcaccagATCCTAATCAAGgcaagtttcctccctccttctcaccccc
cccccccttacgccgattcccatctctcactccgctctcctctccattca
tactccacgcagACATTGACGGGCCGTAAGCAGTCGTTCAATTTTGAGCC
AGAAGAGAAGgtgtgtatccgtgttgtgtgggtaacgatgaccgattctc
ctgcgcccaaagtcatctcaatcgtctctcgtttcctcctatccgtttct
tcgcgtagGTCGAAGCGGTAAAGCAGGCGTTGCAAGAGAAGGAAGGCATC
CAAGTTGACCAGATTCGATTGATTTACGCGGGAAAGCAGCTgtacgtatg
attaccagtagtcgttcgtctgggtggtatgtgtatgtgtggtacctctg
ttagatattcatgtcgatagggaaatggggcggggaagacaatgagttat
ctcgcaccctctcccgtttattttttactcgctgatattttatttcctgc
tatcaattcgagtttacaatgcctcgcctcgctctcctcaaccctcaccg
actcttctgtctcttcctcctttccccccctcccttatcctccacaacag
TGCGGATGACAAGACCCTTTCTTTTTACAATGTAGTGGCCGGTGGTACGA
TCCACATGGTCCTGCAGCTTCGCGGCGGATTTAAATAGGAGAAGACGGGG
AAGGAAGGAAGAAGAGGGGAAAGGTGAGAGGGTGCGGTGAGGATGGGATG
CATGTAGACGTACATATGGATGGAGCAAGGCGGAGAAAAAACTTTTAGTG
GGCAAAATTAATCTAAAAAAGAAAATGACTGCATATGCCAGTATGAAG
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protein sequence of NO05G02450.1

>NO05G02450.1-protein ID=NO05G02450.1-protein|Name=NO05G02450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
MQILIKTLTGRKQSFNFEPEEKVEAVKQALQEKEGIQVDQIRLIYAGKQL
ADDKTLSFYNVVAGGTIHMVLQLRGGFK*
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Synonyms
Publications