NO05G02450.1, NO05G02450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02450.1
Unique NameNO05G02450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length504
Alignment locationchr5:652325..653472 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:652325..653472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO05G02450.1 vs.
Match: XP_009531013.1 (hypothetical protein PHYSODRAFT_354994 [Phytophthora sojae]; EGZ13584.1 hypothetical protein PHYSODRAFT_354994 [Phytophthora sojae])

HSP 1 Score: 129.4 bits (324), Expect = 4.900e-27
Identity = 65/77 (84.42%), Postives = 69/77 (89.61%), Query Frame = 0 
Query:    1 MQILIKTLTGRKQSFNFEPEEKVEAVKQALQEKEGIQVDQIRLIYAGKQLADDKTLSFYNVVAGGTIHMVLQLRGGF 78
            MQI IKTLTGRKQ+FNFEP+  +  VKQALQEKEGIQVDQIRLIY+GKQLADDKTL  YNV AGGTIHMVLQLRGGF
Sbjct:    1 MQIQIKTLTGRKQTFNFEPDNTILHVKQALQEKEGIQVDQIRLIYSGKQLADDKTLQDYNVAAGGTIHMVLQLRGGF 77
The following BLAST results are available for this feature:
BLAST of NO05G02450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009531013.14.900e-2784.42hypothetical protein PHYSODRAFT_354994 [Phytophtho... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02450NO05G02450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02450.1NO05G02450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02450.1.cds1NO05G02450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02450.1.cds2NO05G02450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02450.1.cds3NO05G02450.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02450.1.cds4NO05G02450.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02450.1.cds5NO05G02450.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02450.1 ID=NO05G02450.1|Name=NO05G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=504bp
CCCCTTGCGTCCTTTCCGTGTTCGTCATCCAAAGTAACCCCAATCCACAC
ACACAATACTCCCCACAGGCAAGGAGCGGTTTCAAATAGCATCAACGACG
GGAAAGGATGCAGATCCTAATCAAGACATTGACGGGCCGTAAGCAGTCGT
TCAATTTTGAGCCAGAAGAGAAGGTCGAAGCGGTAAAGCAGGCGTTGCAA
GAGAAGGAAGGCATCCAAGTTGACCAGATTCGATTGATTTACGCGGGAAA
GCAGCTTGCGGATGACAAGACCCTTTCTTTTTACAATGTAGTGGCCGGTG
GTACGATCCACATGGTCCTGCAGCTTCGCGGCGGATTTAAATAGGAGAAG
ACGGGGAAGGAAGGAAGAAGAGGGGAAAGGTGAGAGGGTGCGGTGAGGAT
GGGATGCATGTAGACGTACATATGGATGGAGCAAGGCGGAGAAAAAACTT
TTAGTGGGCAAAATTAATCTAAAAAAGAAAATGACTGCATATGCCAGTAT
GAAG
back to top

protein sequence of NO05G02450.1

>NO05G02450.1-protein ID=NO05G02450.1-protein|Name=NO05G02450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
MQILIKTLTGRKQSFNFEPEEKVEAVKQALQEKEGIQVDQIRLIYAGKQL
ADDKTLSFYNVVAGGTIHMVLQLRGGFK*
back to top

mRNA from alignment at chr5:652325..653472+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02450.1 ID=NO05G02450.1|Name=NO05G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1148bp|location=Sequence derived from alignment at chr5:652325..653472+ (Nannochloropsis oceanica)
CCCCTTGCGTCCTTTCCGTGTTCGTCATCCAAAGTAACCCCAATCCACAC
ACACAATACTCCCCACAGGCAAGGAGCGGTTTCAAATAGCATCAACGACG
GGAAAGGATGCAGGTTCGTGTGCTTGTCGGTGGCTTTTGCACTCTCCAAT
TTGTAGATTGTATGCCCCCTCTCATCATCATCGCTGTTCCTCCCCGGGGA
GGGCTTCCACGTGCCAATAATATCAGCTCTCACATTCGCCTCCATCTCTT
CCCCACCCCGCACGTTATCACAACACTCTACATCGGGTACTGTCCACACC
GCCGCACCAGATCCTAATCAAGGCAAGTTTCCTCCCTCCTTCTCACCCCC
CCCCCCCTTACGCCGATTCCCATCTCTCACTCCGCTCTCCTCTCCATTCA
TACTCCACGCAGACATTGACGGGCCGTAAGCAGTCGTTCAATTTTGAGCC
AGAAGAGAAGGTGTGTATCCGTGTTGTGTGGGTAACGATGACCGATTCTC
CTGCGCCCAAAGTCATCTCAATCGTCTCTCGTTTCCTCCTATCCGTTTCT
TCGCGTAGGTCGAAGCGGTAAAGCAGGCGTTGCAAGAGAAGGAAGGCATC
CAAGTTGACCAGATTCGATTGATTTACGCGGGAAAGCAGCTGTACGTATG
ATTACCAGTAGTCGTTCGTCTGGGTGGTATGTGTATGTGTGGTACCTCTG
TTAGATATTCATGTCGATAGGGAAATGGGGCGGGGAAGACAATGAGTTAT
CTCGCACCCTCTCCCGTTTATTTTTTACTCGCTGATATTTTATTTCCTGC
TATCAATTCGAGTTTACAATGCCTCGCCTCGCTCTCCTCAACCCTCACCG
ACTCTTCTGTCTCTTCCTCCTTTCCCCCCCTCCCTTATCCTCCACAACAG
TGCGGATGACAAGACCCTTTCTTTTTACAATGTAGTGGCCGGTGGTACGA
TCCACATGGTCCTGCAGCTTCGCGGCGGATTTAAATAGGAGAAGACGGGG
AAGGAAGGAAGAAGAGGGGAAAGGTGAGAGGGTGCGGTGAGGATGGGATG
CATGTAGACGTACATATGGATGGAGCAAGGCGGAGAAAAAACTTTTAGTG
GGCAAAATTAATCTAAAAAAGAAAATGACTGCATATGCCAGTATGAAG
back to top

Coding sequence (CDS) from alignment at chr5:652325..653472+

>NO05G02450.1 ID=NO05G02450.1|Name=NO05G02450.1|organism=Nannochloropsis oceanica|type=CDS|length=237bp|location=Sequence derived from alignment at chr5:652325..653472+ (Nannochloropsis oceanica)
ATGCAGATCCTAATCAAGACATTGACGGGCCGTAAGCAGTCGTTCAATTT
TGAGCCAGAAGAGAAGGTCGAAGCGGTAAAGCAGGCGTTGCAAGAGAAGG
AAGGCATCCAAGTTGACCAGATTCGATTGATTTACGCGGGAAAGCAGCTT
GCGGATGACAAGACCCTTTCTTTTTACAATGTAGTGGCCGGTGGTACGAT
CCACATGGTCCTGCAGCTTCGCGGCGGATTTAAATAG
back to top
Synonyms
Publications