NO05G02400, NO05G02400 (gene) Nannochloropsis oceanica

Overview
NameNO05G02400
Unique NameNO05G02400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2141
Alignment locationchr5:639921..642061 -

Link to JBrowse

Properties
Property NameValue
DescriptionDna polymerase i
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:639921..642061 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00171085'-flap endonuclease activity
GO:0003824catalytic activity
GO:0003677DNA binding
GO:0004518nuclease activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0033567DNA replication, Okazaki fragment processing
GO:0009058biosynthetic process
GO:0006259DNA metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR0362795-3_exonuclease_C_sf
IPR029060PIN_domain-like
IPR038969FEN_bact-like
IPR0200465-3_exonucl_a-hlix_arch_N
IPR0200455-3_exonuclease_C
IPR008918HhH2
IPR0024215-3_exonuclease_N
Homology
BLAST of NO05G02400 vs. NCBI_GenBank
Match: WP_039992257.1 (DNA polymerase I [Paraglaciecola chathamensis])

HSP 1 Score: 151.0 bits (380), Expect = 8.900e-33
Identity = 97/306 (31.70%), Postives = 162/306 (52.94%), Query Frame = 0
Query:  121 AIQPAPSSEFFFILDATSLLYRSYFSKYQLNDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGYKQNRDAQPAELLALVPRAMTYLRALGCVSFRSPIHEGDDLMGTLSHLACTLSPNVTTILVTEDKDMMCLVSDQGKTFVMHPRTLQIFDEAAVESKMGVPPSLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAAVPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKLEL-PMLSSPSSSSWVSLEHLRYLGVDEVEGEALMEEAMGA 426
            A  P   +  F ++D +S L+R++     L +  G+    +  +      L+ + NP ++A  FD  +   FR  ++  YK NR + P EL + +      ++A+G         E DD++GTL+  A  L   + T++ T DKDM  LV++     +++    QI D   V  K G+PP LV D L L GD VD IPGV GVG ++AV LL+  GS++ +Y NLD +A + + RGAK +A+K+R+ +E   +  ++  +  DV+++  P   SP+ +++  L  L      E+E +  ++EA  A
Sbjct:    7 ATTPVIPNNPFILVDGSSYLFRAFHGMPPLTNSKGQDTGAVYGVINMLRSLIKQFNPTHMAVVFDA-KGKTFRDEIYTEYKANRPSMPEELRSQIAPLHKIIQAMGLPIIVESGVEADDVIGTLADQASKL--GIPTLISTGDKDMAQLVNEH--VTLINTMNNQIMDPQGVVEKFGIPPELVIDFLALKGDKVDNIPGVPGVGDKSAVGLLQGIGSINEIYQNLDKIATL-DFRGAKKMADKMREYEEQARLSYTLATIKLDVEMDCSPTSLSPTEANYSELRDL----FAELEFKRWLKEATDA 302          
BLAST of NO05G02400 vs. NCBI_GenBank
Match: WP_068611789.1 (flap endonuclease [Woeseia oceani] >ANO49910.1 hypothetical protein BA177_00575 [Woeseia oceani])

HSP 1 Score: 151.0 bits (380), Expect = 8.900e-33
Identity = 94/266 (35.34%), Postives = 135/266 (50.75%), Query Frame = 0
Query:  132 FILDATSLLYRSYFS-KYQLNDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGYKQNRDAQPAELLALVPRAMTYLRALGCVSFRSPIHEGDDLMGTLSHLACTLSPNVTTILVTEDKDMMCLVSDQ-------GKTFVMHPRTLQIFDEAAVESKMGVPPSLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAAVPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKLELP 390
            +++D +  ++R++FS    + D DG          +     + R  P YVA  FD      FR  ++P YK NRD  P EL         Y RA+G + +  P +E DDL+GTL  +       + + +V+ DKD+  L+S Q       GK  + + +  ++F         GV P  +AD L LAGD VD IPGV GVG +TA  LL+ FGSL  +YANLD+V  V  +RGAKTL  KL   +    + R +  +ACD  +  P
Sbjct:    3 YLIDGSVYVFRAWFSMPDDMLDDDGNPVNAFYGFCRFLGDFMERVRPEYVAVLFDESLSGSFRTEIYPNYKANRDPAPPELKRQFDLCRQYARAMGILEYAQPGYEADDLIGTL--VTSGREQGIPSTIVSRDKDLAQLISRQDVFWDFAGKGQLRYEQIPEVF---------GVWPEQIADFLALAGDAVDNIPGVPGVGKKTAAALLQHFGSLQGIYANLDSVHEV-TVRGAKTLGAKLEMHRPAAMLARQLTGIACDAPVTNP 256          
BLAST of NO05G02400 vs. NCBI_GenBank
Match: PKN59110.1 (hypothetical protein CVU56_01950 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14])

HSP 1 Score: 151.0 bits (380), Expect = 8.900e-33
Identity = 98/257 (38.13%), Postives = 133/257 (51.75%), Query Frame = 0
Query:  133 ILDATSLLYRSYFSKYQLNDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGYKQNRDAQPAELLALVPRAMTYLRALGCVSFRSPIHEGDDLMGTLSHLACTLSPNVTTILVTEDKDMMCLVSDQGKTF-VMHPRTLQIFDEAAVESKMGVPPSLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAAVPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKLEL 389
            +LD T+L+YR++    +    DG     +    +  A+ +      + A  +D   D  FRR +  GYK +R A P  LLA + RA    RAL   S   P  E DDLM TL+  A      +   LVT DKD+  LV D      V +P +  +FDEA V + +GVP     D   LAGD  DG+PGV+GVGP+ A+ L+RAF SLD LYA LD V  +  LRGA  + ++L   + D    R +VAL+    L L
Sbjct:   11 VLDGTALVYRAFHGGARWTAADGSEVGAVHAFAQRLARWLGNARSRHFAVVWDAAGDS-FRRQIDAGYKAHRKAPPDALLAQLARARELTRALALTSLTVPGFEADDLMATLTVRA--RGDGLAVWLVTPDKDLYQLVDDAAPAVRVFNPVSKTVFDEARVAATLGVPARAAVDYFALAGDSSDGVPGVRGVGPRAAMELIRAFESLDGLYARLDEVPGLA-LRGAAAVQKRLDAGRADAERSRRLVALSSQAPLGL 263          
BLAST of NO05G02400 vs. NCBI_GenBank
Match: WP_036948662.1 (DNA polymerase I [Providencia alcalifaciens] >ETT03046.1 DNA-directed DNA polymerase [Providencia alcalifaciens PAL-3] >EUC98205.1 DNA-directed DNA polymerase [Providencia alcalifaciens PAL-1])

HSP 1 Score: 150.2 bits (378), Expect = 1.500e-32
Identity = 93/257 (36.19%), Postives = 140/257 (54.47%), Query Frame = 0
Query:  133 ILDATSLLYRSYFSKYQLNDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGYKQNRDAQPAELLALVPRAMTYLRALGCVSFRSPIHEGDDLMGTLSHLACTLSPNVTTILVTEDKDMMCLVSDQGKTFVMHPRTLQIFDEAAVESKMGVPPSLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAAVPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKLELP 390
            ++D +S LYR+Y +   L +  G+    +  +      L+ ++ P++VA  FD  +   FR  LF  YK +R   P +L A +      + A+G      P  E DD++GTL+  A   S  +  ++ T DKDM  LV  +    +++  T  I     VE+K GVPPSL+ D L L GD  D IPGV GVG +TA+ LL+  GSLD++Y NLDA+A +   RG+KTLA K+ + +E   +   +  +  DV+LE P
Sbjct:   11 LVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYTPSHVAVVFDA-KGKTFRDELFESYKSHRPPMPDDLRAQIAPLHEMVEAMGLPLLVVPGVEADDVIGTLAREAS--SKGMPVLISTGDKDMAQLV--EPNITLINTMTNTILGPEEVEAKYGVPPSLIIDFLALMGDSSDNIPGVPGVGEKTALALLQGIGSLDDIYKNLDAIAPL-GFRGSKTLAPKMEENRELALLSYQLATIKTDVELEKP 261          
BLAST of NO05G02400 vs. NCBI_GenBank
Match: WP_071978144.1 (DNA polymerase I [Alteromonas sp. RW2A1] >APE04372.1 DNA polymerase I [Alteromonas sp. RW2A1])

HSP 1 Score: 150.2 bits (378), Expect = 1.500e-32
Identity = 85/264 (32.20%), Postives = 144/264 (54.55%), Query Frame = 0
Query:  124 PAPSSEFFFILDATSLLYRSYFSKYQLNDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGYKQNRDAQPAELLALVPRAMTYLRALGCVSFRSPIHEGDDLMGTLSHLACTLSPNVTTILVTEDKDMMCLVSDQGKTFVMHPRTLQIFDEAAVESKMGVPPSLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAAVPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKLE 388
            P      F ++D +S L+R++     L +  G+    +  +      L+ ++NP ++A  FD  +   FR  ++P YK NR A P EL + +    T ++A+G      P  E DD++GT +  A      + T++ T DKDM  LV+      +++  T Q+ D   V++K G+PP LV D L L GD VD IPGV GVG ++A  LL   G +D++Y NLD +A + + RG+K++A K+ + +E   +  ++  ++ D++L+
Sbjct:    2 PESKKSPFILVDGSSYLFRAFHGLPPLTNSKGQDTGAIYGVVNMLKSLIKQYNPTHMAVVFDA-KGKTFRDDIYPEYKANRPAMPDELRSQIEPLHTIIKAMGLPVIVEPGVEADDVIGTFAKHA--TEKGIDTVISTGDKDMAQLVNQH--ITLINTMTNQVMDVEGVKTKFGIPPELVIDFLALKGDKVDNIPGVPGVGDKSAQALLNGIGGIDDIYQNLDKIADL-SFRGSKSMAAKMAEYEEQARLSYTLATISVDLELD 259          
BLAST of NO05G02400 vs. NCBI_GenBank
Match: WP_100970659.1 (DNA polymerase I [Alteromonas sp. MB-3u-76] >AUC86777.1 DNA polymerase I [Alteromonas sp. MB-3u-76])

HSP 1 Score: 150.2 bits (378), Expect = 1.500e-32
Identity = 85/264 (32.20%), Postives = 144/264 (54.55%), Query Frame = 0
Query:  124 PAPSSEFFFILDATSLLYRSYFSKYQLNDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGYKQNRDAQPAELLALVPRAMTYLRALGCVSFRSPIHEGDDLMGTLSHLACTLSPNVTTILVTEDKDMMCLVSDQGKTFVMHPRTLQIFDEAAVESKMGVPPSLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAAVPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKLE 388
            P      F ++D +S L+R++     L +  G+    +  +      L+ ++NP ++A  FD  +   FR  ++P YK NR A P EL + +    T ++A+G      P  E DD++GT +  A      + T++ T DKDM  LV+      +++  T Q+ D   V++K G+PP LV D L L GD VD IPGV GVG ++A  LL   G +D++Y NLD +A + + RG+K++A K+ + +E   +  ++  ++ D++L+
Sbjct:    2 PESKKSPFILVDGSSYLFRAFHGLPPLTNSKGQDTGAIYGVVNMLKSLIKQYNPTHMAVIFDA-KGKTFRDDIYPEYKANRPAMPDELRSQIEPLHTIIKAMGLPVIVEPGVEADDVIGTFAKHA--TEKGIDTVISTGDKDMAQLVNQH--ITLINTMTNQVMDVEGVKTKFGIPPELVIDFLALKGDKVDNIPGVPGVGDKSAQALLNGIGGIDDIYQNLDKIADL-SFRGSKSMAAKMAEYEEQARLSYTLATISVDLELD 259          
BLAST of NO05G02400 vs. NCBI_GenBank
Match: WP_108478749.1 (DNA polymerase I [Providencia alcalifaciens])

HSP 1 Score: 150.2 bits (378), Expect = 1.500e-32
Identity = 93/257 (36.19%), Postives = 140/257 (54.47%), Query Frame = 0
Query:  133 ILDATSLLYRSYFSKYQLNDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGYKQNRDAQPAELLALVPRAMTYLRALGCVSFRSPIHEGDDLMGTLSHLACTLSPNVTTILVTEDKDMMCLVSDQGKTFVMHPRTLQIFDEAAVESKMGVPPSLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAAVPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKLELP 390
            ++D +S LYR+Y +   L +  G+    +  +      L+ ++ P++VA  FD  +   FR  LF  YK +R   P +L A +      + A+G      P  E DD++GTL+  A   S  +  ++ T DKDM  LV  +    +++  T  I     VE+K GVPPSL+ D L L GD  D IPGV GVG +TA+ LL+  GSLD++Y NLDA+A +   RG+KTLA K+ + +E   +   +  +  DV+LE P
Sbjct:   11 LVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYTPSHVAVVFDA-KGKTFRDELFESYKSHRPPMPDDLRAQIAPLHEMVEAMGLPLLVVPGVEADDVIGTLAREAS--SKGMPVLISTGDKDMAQLV--EPNITLINTMTNTILGPEEVEAKYGVPPSLIIDFLALMGDSSDNIPGVPGVGEKTALALLQGIGSLDDIYKNLDAIAPL-GFRGSKTLAPKMEENRELALLSYQLATIKTDVELEKP 261          
BLAST of NO05G02400 vs. NCBI_GenBank
Match: WP_005600570.1 (DNA polymerase I [Actinobacillus pleuropneumoniae] >EFL79114.1 DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str. 4226] >EFM88140.1 hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae serovar 2 str. S1536])

HSP 1 Score: 149.8 bits (377), Expect = 2.000e-32
Identity = 94/256 (36.72%), Postives = 140/256 (54.69%), Query Frame = 0
Query:  133 ILDATSLLYRSYFSKYQLNDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGYKQNRDAQPAELLALVPRAMTYLRALGCVSFRSPIHEGDDLMGTLSHLACTLSPNVTTILVTEDKDMMCLVSDQGKTFVMHPRTLQIFDEAAVESKMGVPPSLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAAVPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKLEL 389
            ++D +S LYR++ +   L + +G+    +  +      LV++  P+++A  FD  +   FR  LF  YK +R   P +L A V    T ++ALG         E DD++GTL+  A     NV  ++ T DKDM  LV+D     +++     + D   V  K G+PP L+ D L L GD  D IPGVKGVG +TA+ LL+  GSL  +YANLD VA + + RGAKTLA KL  +K+   +   +  +  DV+LE+
Sbjct:   11 LVDGSSYLYRAFHAFPPLTNKNGEPTGAMYGVLNMLKSLVAQVEPSHIAVVFDA-KGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQAANAGKNV--LISTGDKDMAQLVNDH--IMLINTMNNTLLDREGVIEKYGIPPELIIDYLALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATL-SFRGAKTLAPKLEAEKDAAALSYLLATIKTDVELEV 260          
BLAST of NO05G02400 vs. NCBI_GenBank
Match: WP_005607242.1 (DNA polymerase I [Actinobacillus pleuropneumoniae] >EFL81037.1 DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str. Femo] >EFM92512.1 hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae serovar 6 str. Femo])

HSP 1 Score: 149.8 bits (377), Expect = 2.000e-32
Identity = 94/256 (36.72%), Postives = 140/256 (54.69%), Query Frame = 0
Query:  133 ILDATSLLYRSYFSKYQLNDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGYKQNRDAQPAELLALVPRAMTYLRALGCVSFRSPIHEGDDLMGTLSHLACTLSPNVTTILVTEDKDMMCLVSDQGKTFVMHPRTLQIFDEAAVESKMGVPPSLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAAVPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKLEL 389
            ++D +S LYR++ +   L + +G+    +  +      LV++  P+++A  FD  +   FR  LF  YK +R   P +L A V    T ++ALG         E DD++GTL+  A     NV  ++ T DKDM  LV+D     +++     + D   V  K G+PP L+ D L L GD  D IPGVKGVG +TA+ LL+  GSL  +YANLD VA + + RGAKTLA KL  +K+   +   +  +  DV+LE+
Sbjct:   11 LVDGSSYLYRAFHAFPPLTNKNGEPTGAMYGVLNMLKSLVAQVEPSHIAVVFDA-KGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQAANAGKNV--LISTGDKDMAQLVNDH--IMLINTMNNTLLDREGVIDKYGIPPELIIDYLALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATL-SFRGAKTLAPKLEAEKDAAALSYLLATIKTDVELEV 260          
BLAST of NO05G02400 vs. NCBI_GenBank
Match: WP_005596603.1 (DNA polymerase I [Actinobacillus pleuropneumoniae] >EFM85870.1 hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] >ASU16422.1 DNA polymerase I [Actinobacillus pleuropneumoniae])

HSP 1 Score: 149.8 bits (377), Expect = 2.000e-32
Identity = 94/256 (36.72%), Postives = 140/256 (54.69%), Query Frame = 0
Query:  133 ILDATSLLYRSYFSKYQLNDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGYKQNRDAQPAELLALVPRAMTYLRALGCVSFRSPIHEGDDLMGTLSHLACTLSPNVTTILVTEDKDMMCLVSDQGKTFVMHPRTLQIFDEAAVESKMGVPPSLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAAVPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKLEL 389
            ++D +S LYR++ +   L + +G+    +  +      LV++  P+++A  FD  +   FR  LF  YK +R   P +L A V    T ++ALG         E DD++GTL+  A     NV  ++ T DKDM  LV+D     +++     + D   V  K G+PP L+ D L L GD  D IPGVKGVG +TA+ LL+  GSL  +YANLD VA + + RGAKTLA KL  +K+   +   +  +  DV+LE+
Sbjct:   11 LVDGSSYLYRAFHAFPPLTNKNGEPTGAMYGVLNMLKSLVAQVEPSHIAVVFDA-KGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQAANAGKNV--LISTGDKDMAQLVNDH--IMLINTMNNTLLDREGVIDKYGIPPELIIDYLALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATL-SFRGAKTLAPKLEAEKDAAALSYLLATIKTDVELEV 260          
The following BLAST results are available for this feature:
BLAST of NO05G02400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_039992257.18.900e-3331.70DNA polymerase I [Paraglaciecola chathamensis][more]
WP_068611789.18.900e-3335.34flap endonuclease [Woeseia oceani] >ANO49910.1 hyp... [more]
PKN59110.18.900e-3338.13hypothetical protein CVU56_01950 [Deltaproteobacte... [more]
WP_036948662.11.500e-3236.19DNA polymerase I [Providencia alcalifaciens] >ETT0... [more]
WP_071978144.11.500e-3232.20DNA polymerase I [Alteromonas sp. RW2A1] >APE04372... [more]
WP_100970659.11.500e-3232.20DNA polymerase I [Alteromonas sp. MB-3u-76] >AUC86... [more]
WP_108478749.11.500e-3236.19DNA polymerase I [Providencia alcalifaciens][more]
WP_005600570.12.000e-3236.72DNA polymerase I [Actinobacillus pleuropneumoniae]... [more]
WP_005607242.12.000e-3236.72DNA polymerase I [Actinobacillus pleuropneumoniae]... [more]
WP_005596603.12.000e-3236.72DNA polymerase I [Actinobacillus pleuropneumoniae]... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL083nonsL083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR121ngnoR121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003575NSK003575Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02400.1NO05G02400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584331gene_3041Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100036g13gene2457Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02400.1NO05G02400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02400 ID=NO05G02400|Name=NO05G02400|organism=Nannochloropsis oceanica|type=gene|length=2141bp
TGGGGGAAGGCTGGGGGGTGCGTGGTGGGGCAGAAACTTCCTTGAAGGAG
GAGGGTTATCATCGCTCCCAGCTGGGCATAATTGAGGCTTGCCAGCCTCG
CGGGGGCGAATGTAGTGGTTTGCGATAAGGGGAGTGGGGGGAGGGTGTGG
GGGTGTTCTGTCTTGAGATGCACGCTCTTCTCGGTTTCTCGATGAAGAGG
GCCATGTCCTTTCGTGTGCGTTGTTCATGACGAGATGCACGAAATGTGAA
TTGATCCAAATGATGTCTTGTTGGCCTACCGATTACGATTTCTTGGAAAT
GAATTAGATAGTTTTTTTGGTTCAAAAAAGAAAAAGAAAAAAAGATGGGG
TAACCCAGCCGGCCTGTATCAAATATCGCCGTAGAACATCACAAACCTTT
CCCTTCACAGGGAATAGGGAGTAATGGTGACGGTTTGTGCAGTCTCAGCC
ACTCACCATAATCTGACGATGCCCCTTTCTGCGTCACCACAAACCGCCCA
GAATCAGATGATGTCACGCAGAGGAGGGGTATGCCGGGTGTGAAGTGCCG
TTGTAAGAAACGTGAGAGTCGTGGGAAGATGAAGCGGAGTCGGTCATATG
CTCGTCGCTCTCAAAAGGTCGGTGGCGTCAATAGCAGCAAATCTAGCGCC
CACTACTATCGCAACAATGTCCTGATTCCCATCTGGAGACCACTAATTCG
CCTATTCATGGCCCTCGCCCTGACATTAGCCGCTTCGAAGCTTTGCCAAA
CCGTATGCGCGGTCACGACTGCTACAAGCACCTTCATCACTCGCCCGTTG
TTATCGAGAGTGGCCTCCCTCACTTCCTCTGTTCTGTCCTCTTCCAGCTC
CTCATCCTCTCCCTGGTCCTCGCGCATCCCTCCACCAATAGCCATCCAGC
CCGCGCCCTCATCAGAATTCTTTTTCATCCTGGACGCCACAAGCCTTCTT
TACCGTTCATACTTCTCCAAGTATCAGCTCAACGACTACGATGGGAAAAT
CGACAAACCACTGCTATTACTGGgtaggctggaagaaagggatagagggt
gagaggagtagaagtataggcccgactttacatcggtctcctttttgcta
cttggttcctttgttaaaaccgcaatagaagaaataatattgtggctctt
gattgatcagctgactggaagtctctgactcgccttcacaatccatccct
ctacatactgtcctagGTAAGGAGTTCGCCCAGCTCGTATCCCGTCATAA
CCCAGCGTACGTAGCGGCTTGTTTCGACGGGCGCAGAGACGACGTTTTTC
GCAGGGCACTCTTCCCTGGATACAAACAAAACCGAGACGCACAACCAGCC
GAGCTTCTTGCATTGGTCCCCCGGGCAATGACATATCTGAGGGCCTTAGG
ATGCGTGTCCTTTCGGTCCCCCATCCACGAAGGAGACGATCTGATGGGCA
CACTTTCGCATCTTGCCTGCACCCTGTCCCCGAATGTAACCACCATCCTT
GTGACCGAAGATAAGGACATGATGTGCCTCGTGAGCGATCAAGGAAAGAC
GTTTGTCATGCATCCACGAACTCTTCAAATATTCGATGAAGCCGCTGTCG
AAAGCAAGATGGGGGTGCCTCCCTCCCTTGTTGCTGACCTTCTCTGCTTA
GCCGGTGACCCCGTTGATGGCATCCCCGGTGTGAAAGGTGTAGGGCCACA
AACAGCTGTGAGGCTCTTAAGAGCATTCGGCTCACTCGATAATCTATACG
CAAATCTGGATGCCGTCGCGGCCGTGCCCAATTTAAGGGGGGCGAAGACC
CTAGCAGAGAAATTACGCAAACAAAAAGAGGACGTGTGGATATACCGTTC
TGTTGTCGCCCTTGCTTGCGATGTAAAGCTAGAGCTTCCAATGTTGTCGT
CGCCCTCCTCCTCGTCCTGGGTGTCTTTGGAACATTTAAGGTATTTGGGA
GTTGACGAGGTGGAGGGGGAGGCGCTGATGGAGGAAGCGATGGGTGCTAA
AGGGGTGGGGAAAGGACCTTTTTTGAAGTTGTTGAAGGAACAGCAACGGC
CGTCGGTGCCATTTTGAGTCAATACAGGAAGAATTTAGAACAAACTTAGC
TTCTGTAGTACACGACTGATAAAGAGAATCACACAAACAAT
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protein sequence of NO05G02400.1

>NO05G02400.1-protein ID=NO05G02400.1-protein|Name=NO05G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MPGVKCRCKKRESRGKMKRSRSYARRSQKVGGVNSSKSSAHYYRNNVLIP
IWRPLIRLFMALALTLAASKLCQTVCAVTTATSTFITRPLLSRVASLTSS
VLSSSSSSSSPWSSRIPPPIAIQPAPSSEFFFILDATSLLYRSYFSKYQL
NDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGY
KQNRDAQPAELLALVPRAMTYLRALGCVSFRSPIHEGDDLMGTLSHLACT
LSPNVTTILVTEDKDMMCLVSDQGKTFVMHPRTLQIFDEAAVESKMGVPP
SLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAA
VPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKLELPMLSSPSSSSWV
SLEHLRYLGVDEVEGEALMEEAMGAKGVGKGPFLKLLKEQQRPSVPF*
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Synonyms
Publications