NO05G02270, NO05G02270 (gene) Nannochloropsis oceanica

Overview
NameNO05G02270
Unique NameNO05G02270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1104
Alignment locationchr5:602121..603224 -

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Properties
Property NameValue
DescriptionFerredoxin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:602121..603224 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
Vocabulary: INTERPRO
TermDefinition
IPR0360102Fe-2S_ferredoxin-like_sf
IPR0010412Fe-2S_ferredoxin-type
Homology
[Close]
BLAST of NO05G02270 vs. NCBI_GenBank
Match: PUZ37702.1 (hypothetical protein GQ55_9G141800 [Panicum hallii var. hallii])

HSP 1 Score: 114.4 bits (285), Expect = 2.900e-22
Identity = 60/134 (44.78%), Postives = 84/134 (62.69%), Query Frame = 0 
Query:    6 LLLIACASSALAF-LPYTPRGIAARSAMRVAPLFGHQVTIEMLDGKTHTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGSTLDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFA 139
            LL +A  + +  F LP  P     R A    P   ++VTIE   G++  + VE  +++L  ALDEG+++PHDCKLG C+ C A+++SG VDQ+   L D V+ +GYAL C AYP++D  IR IPEDEL+  Q A
Sbjct:    8 LLRLATPTRSPRFGLPSRPAAARPRGARLAPPPRAYKVTIEH-GGESRVVEVEWDETILSRALDEGLDVPHDCKLGVCMTCPARLVSGEVDQSDGMLSDDVVAQGYALLCAAYPRSDCTIRVIPEDELLQVQLA 140
[Close]
BLAST of NO05G02270 vs. NCBI_GenBank
Match: XP_010090921.1 (uncharacterized protein LOC21387965 [Morus notabilis] >EXB41293.1 Ferredoxin-3 [Morus notabilis])

HSP 1 Score: 113.6 bits (283), Expect = 4.900e-22
Identity = 52/99 (52.53%), Postives = 72/99 (72.73%), Query Frame = 0 
Query:   40 HQVTIEMLDGKTHTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGSTLDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFA 139
            ++V IE  +G++  + V+  +++L  ALD G+ +PHDCKLG C+ C AK+LSG+VDQ+   L D V+ERGYAL C AYPQ+D  IR+IPEDEL+  Q A
Sbjct:   42 YKVVIEH-EGQSTELEVDPDETILSKALDSGLSVPHDCKLGVCMTCPAKLLSGSVDQSDGMLSDDVVERGYALLCAAYPQSDCEIRTIPEDELLSLQLA 139
[Close]
BLAST of NO05G02270 vs. NCBI_GenBank
Match: CDO99062.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 113.2 bits (282), Expect = 6.400e-22
Identity = 52/99 (52.53%), Postives = 73/99 (73.74%), Query Frame = 0 
Query:   40 HQVTIEMLDGKTHTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGSTLDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFA 139
            ++V+IE  +GKT  + VE  +++L  ALD G+ +PHDCKLG C+ C A++LSGTVDQ+   L D V+ERGYAL C +YP++D  IR+IPE+EL+  Q A
Sbjct:   48 YKVSIEH-EGKTTELEVEPDETILSKALDNGLPVPHDCKLGVCMTCPAQLLSGTVDQSEGMLSDDVVERGYALLCASYPRSDCKIRTIPEEELLSLQLA 145
[Close]
BLAST of NO05G02270 vs. NCBI_GenBank
Match: GAU18842.1 (hypothetical protein TSUD_228320 [Trifolium subterraneum])

HSP 1 Score: 113.2 bits (282), Expect = 6.400e-22
Identity = 51/99 (51.52%), Postives = 72/99 (72.73%), Query Frame = 0 
Query:   40 HQVTIEMLDGKTHTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGSTLDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFA 139
            ++V IE  +GK+  + VE  +++L  ALD G+ +PHDCKLG C+ C A+++SGTVDQ+   L D V+ERGYAL C +YP++D VIR IPE+EL+  Q A
Sbjct:   51 YKVVIEH-EGKSTELEVEPDETILSKALDSGLSVPHDCKLGVCMTCPARLISGTVDQSDGMLSDDVVERGYALLCASYPRSDCVIRVIPEEELLSMQLA 148
[Close]
BLAST of NO05G02270 vs. NCBI_GenBank
Match: XP_002517134.1 (PREDICTED: ferredoxin-1 [Ricinus communis] >EEF45297.1 Ferredoxin-1, putative [Ricinus communis])

HSP 1 Score: 112.8 bits (281), Expect = 8.400e-22
Identity = 52/99 (52.53%), Postives = 72/99 (72.73%), Query Frame = 0 
Query:   40 HQVTIEMLDGKTHTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGSTLDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFA 139
            ++V IE  +G++  + VE  +++L  ALD G+E+PHDCKLG C+ C AKV+SGTVDQ+   L D V++ GYAL C AYP++D  IR+IPEDEL+  Q A
Sbjct:   45 YKVVIEH-EGQSTELEVEPDENILSKALDSGLEVPHDCKLGVCMTCPAKVISGTVDQSEGMLSDDVVDSGYALLCAAYPRSDCRIRTIPEDELLSLQLA 142
[Close]
BLAST of NO05G02270 vs. NCBI_GenBank
Match: OEL21981.1 (hypothetical protein BAE44_0016998 [Dichanthelium oligosanthes])

HSP 1 Score: 112.8 bits (281), Expect = 8.400e-22
Identity = 57/122 (46.72%), Postives = 79/122 (64.75%), Query Frame = 0 
Query:   17 AFLPYTPRGIAARSAMRVAPLFGHQVTIEMLDGKTHTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGSTLDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFA 139
            A LP  P+   AR     AP   ++VTIE    ++  + VE  +++L  ALDEG+++PHDCKLG C+ C A+++SG VDQ+   L D V+ +GYAL C AYP++D  IR IPEDEL+  Q A
Sbjct:   28 AQLPRRPQ--EARLVAAPAPPRAYKVTIEH-GNESRVVEVEEDETILSRALDEGLDVPHDCKLGVCMTCPARLVSGEVDQSDGMLSDDVVAQGYALLCAAYPRSDCTIRVIPEDELLQVQLA 146
[Close]
BLAST of NO05G02270 vs. NCBI_GenBank
Match: XP_020162460.1 (uncharacterized protein LOC109747832 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 112.8 bits (281), Expect = 8.400e-22
Identity = 60/136 (44.12%), Postives = 86/136 (63.24%), Query Frame = 0 
Query:    5 VLLLIACASSALAFLPYTPRGIAARSAMRV--APLFGHQVTIEMLDGKTHTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGSTLDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFA 139
            +L L A  SS    L +       R  +R+  AP   H+VTIE   G++  + +E  +++LE AL+EG+++PHDCKLG C+ C A+++SG VDQ+   L D V+ +GYAL C AYP++D  IR IPEDEL+  Q A
Sbjct:    6 LLHLAASISSPRLHLGHNAAAGLLRRQVRLTAAPPRAHRVTIEH-GGESRVVEMEEDENILERALEEGLDVPHDCKLGVCMTCPARLVSGRVDQSDGMLSDDVVAQGYALLCAAYPRSDCTIRVIPEDELLQVQLA 140
[Close]
BLAST of NO05G02270 vs. NCBI_GenBank
Match: XP_023906104.1 (uncharacterized protein LOC112017876 [Quercus suber] >POF19012.1 ferredoxin-3, chloroplastic [Quercus suber])

HSP 1 Score: 112.8 bits (281), Expect = 8.400e-22
Identity = 52/99 (52.53%), Postives = 72/99 (72.73%), Query Frame = 0 
Query:   40 HQVTIEMLDGKTHTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGSTLDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFA 139
            ++V IE  +G+T  + VE  +++L  ALD G+ +PHDCKLG C+ C A++LSG+VDQ+   L D V+ERGYAL C AYP++D  IR+IPEDEL+  Q A
Sbjct:   45 YKVVIEH-EGQTTQLEVEPDETILAKALDSGLSVPHDCKLGVCMTCPARLLSGSVDQSDGMLSDDVVERGYALLCAAYPRSDCHIRTIPEDELLSLQLA 142
[Close]
BLAST of NO05G02270 vs. NCBI_GenBank
Match: NP_001236060.1 (2Fe-2S ferredoxin-like superfamily protein [Glycine max] >ACU15338.1 unknown [Glycine max] >KHN30476.1 Ferredoxin-3, chloroplastic [Glycine soja] >KRH77855.1 hypothetical protein GLYMA_01G238000 [Glycine max])

HSP 1 Score: 112.1 bits (279), Expect = 1.400e-21
Identity = 51/99 (51.52%), Postives = 71/99 (71.72%), Query Frame = 0 
Query:   40 HQVTIEMLDGKTHTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGSTLDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFA 139
            ++V IE  DG++  + VE  +++L  ALD G+ +PHDCKLG C+ C A+++SG+VDQ+   L D V+ERGYAL C AYPQ+D  I+ IPEDEL+  Q A
Sbjct:   46 YKVVIEH-DGESTEVEVEPDETILSKALDSGLSVPHDCKLGVCMTCPARLISGSVDQSDGMLSDDVVERGYALLCAAYPQSDCHIKIIPEDELLSLQLA 143
[Close]
BLAST of NO05G02270 vs. NCBI_GenBank
Match: XP_008796768.1 (PREDICTED: ferredoxin-1 [Phoenix dactylifera] >XP_017699531.1 PREDICTED: ferredoxin-1 [Phoenix dactylifera])

HSP 1 Score: 112.1 bits (279), Expect = 1.400e-21
Identity = 53/106 (50.00%), Postives = 73/106 (68.87%), Query Frame = 0 
Query:   33 RVAPLFGHQVTIEMLDGKTHTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGSTLDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFA 139
            R A    ++VTIE  +G   TI V   +++L  AL+EG+ +PHDCKLG C+ C A++L+G VDQ+   L D V+ERGYAL C +YP++D  IR+IPEDEL+  Q A
Sbjct:   37 RAAAAAAYKVTIEH-EGTARTIEVGPEETILGRALEEGLSVPHDCKLGVCMTCPARLLAGEVDQSEGMLSDDVVERGYALLCASYPRSDCHIRTIPEDELLSLQLA 141
The following BLAST results are available for this feature:
BLAST of NO05G02270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
PUZ37702.12.900e-2244.78hypothetical protein GQ55_9G141800 [Panicum hallii... [more]
XP_010090921.14.900e-2252.53uncharacterized protein LOC21387965 [Morus notabil... [more]
CDO99062.16.400e-2252.53unnamed protein product [Coffea canephora][more]
GAU18842.16.400e-2251.52hypothetical protein TSUD_228320 [Trifolium subter... [more]
XP_002517134.18.400e-2252.53PREDICTED: ferredoxin-1 [Ricinus communis] >EEF452... [more]
OEL21981.18.400e-2246.72hypothetical protein BAE44_0016998 [Dichanthelium ... [more]
XP_020162460.18.400e-2244.12uncharacterized protein LOC109747832 [Aegilops tau... [more]
XP_023906104.18.400e-2252.53uncharacterized protein LOC112017876 [Quercus sube... [more]
NP_001236060.11.400e-2151.522Fe-2S ferredoxin-like superfamily protein [Glycin... [more]
XP_008796768.11.400e-2150.00PREDICTED: ferredoxin-1 [Phoenix dactylifera] >XP_... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003639NSK003639Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02270.1NO05G02270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584257gene_3029Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g151gene2397Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02270.1NO05G02270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02270 ID=NO05G02270|Name=NO05G02270|organism=Nannochloropsis oceanica|type=gene|length=1104bp
AACAACAGAGGTCACTATTACCGTCACCGCAAGAATGAAACTCTGCGTGC
TCCTTCTGATCGCATGCGCCTCATCTGCACTCGgtaagtacgttgactgg
aaagatatgcgttgcactgggagccgggctccgcatggcatctgtttgat
ccaaagagtgggtagggtttggcttcattgtttgaggagtgtataggacg
gtaacacttcggtagatattgttcataggcaggttacagagagccaagcc
tcgtttcagggcacgagattttggcagtggtttgggacgttgcagcacga
cccatttgtttcaagaaggacactaccccaactcgactgacgtgactctt
tacatccgccccacgtcccgtataatagCTTTCCTACCCTATACGCCAAG
AGGCATCGCAGCTCGTTCTGCAATGCGGGTCGCTCCGCTATTCGGGCACC
AGGTGACGATCGAGgtaaattgcaatgtggggggaggttttaaggagggt
agttcatcttgaatcaatagatcaatttaccaatcaatcaatcatcttgg
acaccatgcacagcctgcttttaattcatttatatcttttattcttattt
aactcctcccctttgtcagATGCTGGACGGTAAGACGCACACGATTAACG
TGGAATCTTATAAGTCGGTGCTAGAGGCAGCCCTAGACGAGGGTATCGAG
CTGCCCCACGATTGCAAGCTAGGCGCCTGCTTGGCCTGCGCAGCGAAGGT
TCTTTCGGGTACGGTAGATCAGACGGGCTCGACACTGGACGACACGGTTA
TCGAGCGGGGCTATGCACTCACCTGCTGCGCCTACCCTCAGACAGACGTC
GTTATCCGCTCCATCCCTGAGGACGAGCTGATCGACGAGCAGTTTGCTCC
TCTCTAAAGCGTTCGAGTGATTGAAGGGGATCATAAACGGTCAAGATAAA
ATAAAATGAACAAAGAAAGCATTGTGTGACACTCTGTACGATAGTGTGGC
AGGATGCTGGGCTTAAAGGTAGATAAGTACTACACGTGAAGGCAGGTACC
ACACACCGAGAGGAAAGTCACCATATGCGCATATTATACAATTCTTCTCG
AGAT
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protein sequence of NO05G02270.1

>NO05G02270.1-protein ID=NO05G02270.1-protein|Name=NO05G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MKLCVLLLIACASSALAFLPYTPRGIAARSAMRVAPLFGHQVTIEMLDGK
THTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGST
LDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFAPL*
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Synonyms
Publications