NO05G02260, NO05G02260 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G02260
Unique Name	NO05G02260
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1800
Alignment location	chr5:600321..602120 +

Link to JBrowse

Properties


Property Name	Value
Description	Lipoyl synthase, mitochondrial

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:600321..602120 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity
GO:0051536	iron-sulfur cluster binding
GO:0016740	transferase activity
GO:0005488	binding

Vocabulary: **INTERPRO**
Term	Definition
IPR031691	LIAS_N
IPR007197	rSAM
IPR006638	Elp3/MiaB/NifB

Vocabulary: **Biological Process**
Term	Definition
GO:0009058	biosynthetic process
GO:0006629	lipid metabolic process
GO:0006464	cellular protein modification process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005739	mitochondrion

Homology

[Close]

BLAST of NO05G02260 vs. NCBI_GenBank
Match: XP_008911775.1 (lipoyl synthase, mitochondrial [Phytophthora parasitica INRA-310] >ETK77651.1 lipoyl synthase, mitochondrial [Phytophthora parasitica] >ETL31096.1 lipoyl synthase, mitochondrial [Phytophthora parasitica] >ETN02818.1 lipoyl synthase, mitochondrial [Phytophthora parasitica INRA-310] >ETO66207.1 lipoyl synthase, mitochondrial [Phytophthora parasitica P1976] >ETP07290.1 lipoyl synthase, mitochondrial [Phytophthora parasitica CJ01A1] >ETP35362.1 lipoyl synthase, mitochondrial [Phytophthora parasitica P10297] >KUG00250.1 Lipoyl synthase [Phytophthora nicotianae])

HSP 1 Score: 448.4 bits (1152), Expect = 2.400e-122
Identity = 222/350 (63.43%), Postives = 263/350 (75.14%), Query Frame = 0

Query:   45 SYSSARLENLRKQLEEEDAAGIAMSLIPPTIHVPETVSSDDVAPA---PRRQKRMEPKPSWLKAVPAEGENYLRLKSTVRKLKLATVCEEARCPNIGECWGGGKEGTATATIMIMGDTCTRGCSFCAVKTSRTPAALDPLEPEHVAQAITEWGLDYVVLTSVDRDDLEDQGSEHFAQTVRGLKTRKPSLLVECLTPDFRGQANLIEHVATSGLDVYAHNLETVERMQRRVRDHRAGYSQSLFVLEHAKKCEPTLLTKTSLMLGVGERPEDIRATLRDLRTAGVDVVTFGQYLRPTKRHMPVKAFVTPERFQEWQVEAEGLGFKYVASGPLVRSSYKAGEFFLKGLLKKQE 392
            S   +RL  LR++L EE   G         + + +     D AP     R+      KP WLKA P +G NY RL+ TV+ L L+TVCEEA+CPNIGECWGGGK+G ATATIM+MGDTCTRGCSFCAVKTS+ P  LDP EP  VA+AI  WGLDY+V TSVDRDD ED G+ HFA+TV  L+ + P +L+ECLTPDF+G  NLI+ VATSGLDV+AHN+ETVER+QRRVRD+RA Y QSL VLE AK   P L+TKTSLMLGVGER ED+  TLRDLR +GVDVVTFGQYLRP+ +HMPVK++VTPE F EWQ  AE +GF YVASGP+VRSSYKAGEFF+K LLK ++
Sbjct:   31 SERGSRLAALRERLAEESRQGPTFE--EQALSLEDFAFEADAAPGTKPSRKPNASNRKPKWLKAQPTQGANYERLRKTVKSLGLSTVCEEAKCPNIGECWGGGKDGIATATIMLMGDTCTRGCSFCAVKTSKKPKPLDPEEPNKVAEAIAAWGLDYIVFTSVDRDDYEDLGAGHFAKTVSTLRAKLPEILIECLTPDFQGHDNLIDQVATSGLDVFAHNMETVERLQRRVRDYRANYKQSLHVLERAKVAAPHLVTKTSLMLGVGERNEDVFQTLRDLRNSGVDVVTFGQYLRPSTKHMPVKSYVTPEAFAEWQKVAEQMGFLYVASGPMVRSSYKAGEFFMKNLLKNRK 378

[Close]

BLAST of NO05G02260 vs. NCBI_GenBank
Match: XP_009531563.1 (hypothetical protein PHYSODRAFT_562522 [Phytophthora sojae] >EGZ14134.1 hypothetical protein PHYSODRAFT_562522 [Phytophthora sojae])

HSP 1 Score: 448.0 bits (1151), Expect = 3.100e-122
Identity = 229/380 (60.26%), Postives = 276/380 (72.63%), Query Frame = 0

Query:   26 AATLPEAALPRSCKARGLASYSSA-----------RLENLRKQLEEEDAAGIAMSLIPPTIHVPETVSSDDVAPA---PRRQKRMEPKPSWLKAVPAEGENYLRLKSTVRKLKLATVCEEARCPNIGECWGGGKEGTATATIMIMGDTCTRGCSFCAVKTSRTPAALDPLEPEHVAQAITEWGLDYVVLTSVDRDDLEDQGSEHFAQTVRGLKTRKPSLLVECLTPDFRGQANLIEHVATSGLDVYAHNLETVERMQRRVRDHRAGYSQSLFVLEHAKKCEPTLLTKTSLMLGVGERPEDIRATLRDLRTAGVDVVTFGQYLRPTKRHMPVKAFVTPERFQEWQVEAEGLGFKYVASGPLVRSSYKAGEFFLKGLLKKQE 392
            A+TL   +   +  AR L+S ++A           RL  LR++L EE   G   +     + + +     + AP     R+      KP WLKA P +G NY RL+ TV+ L L+TVCEEA+CPNIGECWGGGK+G ATATIM+MGDTCTRGCSFCAVKTS+ PA LDP EP  VA+AI  WGLDY+V TSVDRDD ED G+ HFA+TV  L+ + P +L+ECLTPDF+G  NLI+ VA SGLDV+AHNLETVER+QRRVRD+RA Y QSL VLE AK   P L+TKTSLMLGVGER ED+  TLRDLR +GVDVVTFGQYLRP+ +HMPVK++VTPE F EWQ  AE +GF YVASGP+VRSSYKAGEFF+K LLK ++
Sbjct:    3 ASTLTRCSRVAAQHARRLSSTAAASVQVTHSERGSRLAALRERLAEESRQG--PTFAEQALSLEDFAFEPETAPGAKPSRKPNASNRKPKWLKAQPTQGANYERLRKTVKSLGLSTVCEEAKCPNIGECWGGGKDGIATATIMLMGDTCTRGCSFCAVKTSKKPAPLDPEEPNKVAEAIAAWGLDYIVFTSVDRDDYEDLGAGHFAKTVSTLRAKLPEILIECLTPDFQGHDNLIDQVAVSGLDVFAHNLETVERLQRRVRDYRANYKQSLHVLERAKVAAPHLVTKTSLMLGVGERNEDVFQTLRDLRNSGVDVVTFGQYLRPSSKHMPVKSYVTPEAFAEWQKVAEQMGFLYVASGPMVRSSYKAGEFFMKNLLKNRK 380

[Close]

BLAST of NO05G02260 vs. NCBI_GenBank
Match: OQS02644.1 (lipoic acid synthetase, mitochondrial precursor [Thraustotheca clavata])

HSP 1 Score: 448.0 bits (1151), Expect = 3.100e-122
Identity = 228/363 (62.81%), Postives = 270/363 (74.38%), Query Frame = 0

Query:   44 ASYSSARLENLRKQLEEE------------DAAGIAMSLIPPTIHVPETVSSDDVAPAPRRQKRMEPKPSWLKAVPAEGENYLRLKSTVRKLKLATVCEEARCPNIGECWGGGKEGTATATIMIMGDTCTRGCSFCAVKTSRTPAALDPLEPEHVAQAITEWGLDYVVLTSVDRDDLEDQGSEHFAQTVRGLKTRKPSLLVECLTPDFRGQANLIEHVATSGLDVYAHNLETVERMQRRVRDHRAGYSQSLFVLEHAKKCEPTLLTKTSLMLGVGERPEDIRATLRDLRTAGVDVVTFGQYLRPTKRHMPVKAFVTPERFQEWQVEAEGLGFKYVASGPLVRSSYKAGEFFLKGLL---KKQE 392
            A+  ++RLE LR QL +E            DAA      +     +   ++S D     R+      KP+WLKA P  G+NY+RL+ TVR L LATVCEEARCPNIGECWGGGK+GTATATIM+MGDTCTRGCSFCA+KTS+ P  L+P EP+ V++AI  WGLDYVV TSVDRDDL D G+ HFA TV  L+ R P +L+ECLTPDF G+ +LI  VA SGLDV+AHN+ETVERMQRRVRDHRA Y QSL VLE AK+ +PTL+TKTSLMLGVGE+P +I  TL+DLR++GVDVVTFGQYLRP+ RHMPV  +V+PE FQEWQ   E +GF YVASGP+VRSSYKAGEFFL  LL   KKQE
Sbjct:   14 AAMRASRLEVLRAQLAQEALELDEAKKNKIDAAW--GDNVIKAQDIDALMASPDSIKPSRKPNASNRKPTWLKAQPTSGDNYVRLRDTVRTLGLATVCEEARCPNIGECWGGGKDGTATATIMLMGDTCTRGCSFCAIKTSKCPPPLNPEEPDKVSRAIASWGLDYVVFTSVDRDDLPDAGATHFASTVSLLRERLPEILIECLTPDFSGRVDLINQVANSGLDVFAHNVETVERMQRRVRDHRANYRQSLNVLEQAKRAKPTLVTKTSLMLGVGEKPAEILQTLKDLRSSGVDVVTFGQYLRPSTRHMPVAEYVSPEAFQEWQKVGESMGFLYVASGPMVRSSYKAGEFFLTNLLRDKKKQE 374

[Close]

BLAST of NO05G02260 vs. NCBI_GenBank
Match: ETL84350.1 (lipoyl synthase, mitochondrial [Phytophthora parasitica])

HSP 1 Score: 446.0 bits (1146), Expect = 1.200e-121
Identity = 221/350 (63.14%), Postives = 262/350 (74.86%), Query Frame = 0

Query:   45 SYSSARLENLRKQLEEEDAAGIAMSLIPPTIHVPETVSSDDVAPA---PRRQKRMEPKPSWLKAVPAEGENYLRLKSTVRKLKLATVCEEARCPNIGECWGGGKEGTATATIMIMGDTCTRGCSFCAVKTSRTPAALDPLEPEHVAQAITEWGLDYVVLTSVDRDDLEDQGSEHFAQTVRGLKTRKPSLLVECLTPDFRGQANLIEHVATSGLDVYAHNLETVERMQRRVRDHRAGYSQSLFVLEHAKKCEPTLLTKTSLMLGVGERPEDIRATLRDLRTAGVDVVTFGQYLRPTKRHMPVKAFVTPERFQEWQVEAEGLGFKYVASGPLVRSSYKAGEFFLKGLLKKQE 392
            S   +RL  LR++L EE   G         + + +     D AP     R+      KP WLKA P +G NY RL+ TV+ L L+TVCEEA+CPNIGECWGGGK+G ATATIM+MGDTCTRGCSFCAVKTS+ P  LDP EP  VA+AI  WGLDY+V TSVDRDD ED G+ HFA+TV  L+ + P +L+ECLTPDF+G  NLI+ VATSGLDV+AHN+ETVER+QRRVRD+RA Y QSL VLE AK   P L+TKTSLMLGVGER ED+  TLRDLR +GVDVVTFGQYLRP+ +HMPVK++V PE F EWQ  AE +GF YVASGP+VRSSYKAGEFF+K LLK ++
Sbjct:   31 SERGSRLAALRERLAEESRQGPTFE--EQALSLEDFAFEADAAPGTKPSRKPNASNRKPKWLKAQPTQGANYERLRKTVKSLGLSTVCEEAKCPNIGECWGGGKDGIATATIMLMGDTCTRGCSFCAVKTSKKPKPLDPEEPNKVAEAIAAWGLDYIVFTSVDRDDYEDLGAGHFAKTVSTLRAKLPEILIECLTPDFQGHDNLIDQVATSGLDVFAHNMETVERLQRRVRDYRANYKQSLHVLERAKVAAPHLVTKTSLMLGVGERNEDVFQTLRDLRNSGVDVVTFGQYLRPSTKHMPVKSYVPPEAFAEWQKVAEQMGFLYVASGPMVRSSYKAGEFFMKNLLKNRK 378

[Close]

BLAST of NO05G02260 vs. NCBI_GenBank
Match: GAY01327.1 (lipoyl synthase, mitochondrial [Pythium insidiosum])

HSP 1 Score: 446.0 bits (1146), Expect = 1.200e-121
Identity = 232/376 (61.70%), Postives = 280/376 (74.47%), Query Frame = 0

Query:   23 APAAATLPEAALPRSCKARGLASYSSARLENLRKQLEEEDAAGIAMSLIPPTIHVPETVSSDD-----VAPAPRRQKRMEPKPSWLKAVPAEGENYLRLKSTVRKLKLATVCEEARCPNIGECWGGGKEGTATATIMIMGDTCTRGCSFCAVKTSRTPAALDPLEPEHVAQAITEWGLDYVVLTSVDRDDLEDQGSEHFAQTVRGLKTRKPSLLVECLTPDFRGQANLIEHVATSGLDVYAHNLETVERMQRRVRDHRAGYSQSLFVLEHAKKCEPTLLTKTSLMLGVGERPEDIRATLRDLRTAGVDVVTFGQYLRPTKRHMPVKAFVTPERFQEWQVEAEGLGFKYVASGPLVRSSYKAGEFFLKGLLKKQEER 394
            A AA  L   A P   + +   S    RL+ LR++L  E   G A S +   I + +   +DD     V P+ R+      KPSWLKA P +G NY RLK TVR L LATVCEEA+CPNIGECWGGGK+G ATATIM+MGDTCTRGCSFCAVKTS+ PA LDP EP  VA AI++WGLDY+V TSVDRDD  D G+EHFA+TV  L+ + P +++ECLTPDF+G   LI+ VA SGLDV+AHN+ETVER+QRRVRD+RA Y QSLFVLE AK   PT++TKTSLMLG+GER EDI  TL+DLR +GVDVVTFGQYLRP+ +HMPVK +VTPE F EWQ  AE +GF YVASGP+VRSSYKAGEFF+K LL+ ++++
Sbjct:   24 ALAARALSSVAAP---QVKVTKSERGDRLQALRERLAAEAKQGPAFSDL--GISLQDFAFADDGEAPGVKPS-RKPNASNRKPSWLKAQPTQGANYERLKQTVRGLGLATVCEEAKCPNIGECWGGGKDGIATATIMLMGDTCTRGCSFCAVKTSKKPAPLDPEEPMKVATAISQWGLDYIVFTSVDRDDYPDYGAEHFAKTVSLLREKLPEIIIECLTPDFQGDKALIDMVARSGLDVFAHNVETVERLQRRVRDYRANYKQSLFVLEQAKVSVPTMVTKTSLMLGLGERKEDIFQTLKDLRNSGVDVVTFGQYLRPSVKHMPVKEYVTPEAFAEWQKVAEQMGFLYVASGPMVRSSYKAGEFFMKNLLQGRKQK 393

[Close]

BLAST of NO05G02260 vs. NCBI_GenBank
Match: XP_002899048.1 (lipoic acid synthetase, mitochondrial precursor [Phytophthora infestans T30-4] >D0NP70.1 RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic acid synthase; Flags: Precursor >EEY62412.1 lipoic acid synthetase, mitochondrial precursor [Phytophthora infestans T30-4])

HSP 1 Score: 444.9 bits (1143), Expect = 2.600e-121
Identity = 222/350 (63.43%), Postives = 263/350 (75.14%), Query Frame = 0

Query:   45 SYSSARLENLRKQLEEEDAAGIAMSLIPPTIHVPETVSSDDVAPA---PRRQKRMEPKPSWLKAVPAEGENYLRLKSTVRKLKLATVCEEARCPNIGECWGGGKEGTATATIMIMGDTCTRGCSFCAVKTSRTPAALDPLEPEHVAQAITEWGLDYVVLTSVDRDDLEDQGSEHFAQTVRGLKTRKPSLLVECLTPDFRGQANLIEHVATSGLDVYAHNLETVERMQRRVRDHRAGYSQSLFVLEHAKKCEPTLLTKTSLMLGVGERPEDIRATLRDLRTAGVDVVTFGQYLRPTKRHMPVKAFVTPERFQEWQVEAEGLGFKYVASGPLVRSSYKAGEFFLKGLLKKQE 392
            S   ARL  LR++L EE   G   +     + + +     D AP     R+      KP WLKA P +G NY RL+ +V+ L L+TVCEEA+CPNIGECWGGGK+G ATATIM+MGDTCTRGCSFCAVKTSR P  LD  EP  VA+AI  WGLDY+V TSVDRDD ED G+ HFA+TV  L+ + P +L+ECLTPDF+G  NLI+ VATSGLDV+AHN+ETVER+QRRVRD+RA Y QSL VLE AK   P L+TKTSLMLGVGER ED+  TLRDLR +GVDVVTFGQYLRP+ +HMPVK++VTPE F EWQ  AE +GF YVASGP+VRSSYKAGEFF+K LLK ++
Sbjct:   31 SERGARLAALRERLAEETRQG--PTFAEQALSLEDFAFEADAAPGTKPSRKPNASNRKPKWLKAQPTQGANYERLRKSVKSLGLSTVCEEAKCPNIGECWGGGKDGIATATIMLMGDTCTRGCSFCAVKTSRKPKPLDIEEPNKVAEAIAAWGLDYIVFTSVDRDDYEDLGAGHFAKTVSTLRAKLPEILIECLTPDFQGHDNLIDQVATSGLDVFAHNMETVERLQRRVRDYRANYKQSLHVLERAKVAAPHLVTKTSLMLGVGERNEDLFQTLRDLRNSGVDVVTFGQYLRPSTKHMPVKSYVTPEAFAEWQKVAEQMGFLYVASGPMVRSSYKAGEFFMKNLLKNRK 378

[Close]

BLAST of NO05G02260 vs. NCBI_GenBank
Match: POM65667.1 (Lipoyl synthase, mitochondrial, partial [Phytophthora palmivora var. palmivora])

HSP 1 Score: 435.3 bits (1118), Expect = 2.100e-118
Identity = 206/285 (72.28%), Postives = 238/285 (83.51%), Query Frame = 0

Query:  107 PAEGENYLRLKSTVRKLKLATVCEEARCPNIGECWGGGKEGTATATIMIMGDTCTRGCSFCAVKTSRTPAALDPLEPEHVAQAITEWGLDYVVLTSVDRDDLEDQGSEHFAQTVRGLKTRKPSLLVECLTPDFRGQANLIEHVATSGLDVYAHNLETVERMQRRVRDHRAGYSQSLFVLEHAKKCEPTLLTKTSLMLGVGERPEDIRATLRDLRTAGVDVVTFGQYLRPTKRHMPVKAFVTPERFQEWQVEAEGLGFKYVASGPLVRSSYKAGEFFLKGLLKKQE 392
            P +G NY RL+ TV+ L L+TVCEEA+CPNIGECWGGGK+G ATATIM+MGDTCTRGCSFCAVKTS+ PA LDP EP  VA+AI  WGLDY+V TSVDRDD ED G+ HFAQTV  L+ + P +L+ECLTPDF+G  NLI+ VATSGLDV+AHNLETVER+QRRVRD+RA Y QSL VLE AK   P L+TKTSLMLGVGER ED+  TLRDLR +GVDVVTFGQYLRP+ +HMPVK++VTPE F EWQ  AE +GF YVASGP+VRSSYKAGEFF+K LLK ++
Sbjct:    1 PTQGANYERLRKTVKSLGLSTVCEEAKCPNIGECWGGGKDGIATATIMLMGDTCTRGCSFCAVKTSKKPAPLDPEEPNKVAEAIAAWGLDYIVFTSVDRDDYEDLGAGHFAQTVSTLRAKLPEILIECLTPDFQGHDNLIDQVATSGLDVFAHNLETVERLQRRVRDYRANYKQSLHVLERAKVSAPHLVTKTSLMLGVGERNEDVFQTLRDLRNSGVDVVTFGQYLRPSTKHMPVKSYVTPEAFAEWQKVAEQMGFLYVASGPMVRSSYKAGEFFMKNLLKNRK 285

[Close]

BLAST of NO05G02260 vs. NCBI_GenBank
Match: OEU12380.1 (lipoic acid synthetase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 434.9 bits (1117), Expect = 2.700e-118
Identity = 209/307 (68.08%), Postives = 248/307 (80.78%), Query Frame = 0

Query:   89 APRRQKRMEPKPSWLKAVPAEGENYLRLKSTVRKLKLATVCEEARCPNIGECWGGGKEGTATATIMIMGDTCTRGCSFCAVKTSRTPAALDPLEPEHVAQAITEWGLDYVVLTSVDRDDLEDQGSEHFAQTVRGLKTRKPSLLVECLTPDFRGQANLIEHVATSGLDVYAHNLETVERMQRRVRDHRAGYSQSLFVLEHAKKCEPTLLTKTSLMLGVGERPEDIRATLRDLRTAGVDVVTFGQYLRPTKRHMPVKAFVTPERFQEWQVEAEGLGFKYVASGPLVRSSYKAGEFFLKGLL--KKQEER 394
            AP R  ++ PKP WL+  PA+ +NY  L+ TVRKL LATVCEEARCPNIGECWGGGK+ TATATIMIMGDTCTRGC FC+VKTSR P  LDP EPE V+ AI +WGLDYVVLTSVDRDDLEDQGS HF + ++ LK +KP LLVE LTPDF+G   LI++VATSGLDV+AHN+ETV+R+  +VRD RA Y QSL VL++AK      +TKTSLMLG+GE  ED+  TL DLR   VDVVTFGQYL+PT++H+PVK +VTPE F EW+++A+ +GFKYVASGPLVRSSYKAGEFFLK LL  +K EE+
Sbjct:   86 APPRSSKILPKPKWLRVQPADSDNYRELRKTVRKLGLATVCEEARCPNIGECWGGGKDKTATATIMIMGDTCTRGCRFCSVKTSRKPPPLDPEEPEKVSSAIAKWGLDYVVLTSVDRDDLEDQGSNHFREVIQKLKEKKPDLLVEALTPDFQGNEELIQNVATSGLDVFAHNVETVKRLTSKVRDRRANYDQSLAVLKYAKNV-GNCITKTSLMLGLGETEEDLMETLHDLRAIDVDVVTFGQYLQPTRKHLPVKKYVTPEEFDEWKIKADNMGFKYVASGPLVRSSYKAGEFFLKNLLNDRKMEEQ 391

[Close]

BLAST of NO05G02260 vs. NCBI_GenBank
Match: XP_024575039.1 (lipoyl mitochondrial [Plasmopara halstedii] >CEG38670.1 lipoyl mitochondrial [Plasmopara halstedii])

HSP 1 Score: 433.0 bits (1112), Expect = 1.000e-117
Identity = 218/347 (62.82%), Postives = 262/347 (75.50%), Query Frame = 0

Query:   49 ARLENLRKQLEEEDAAGIAMSLIPPTIHVPETVSSDDVAPA---PRRQKRMEPKPSWLKAVPAEGENYLRLKSTVRKLKLATVCEEARCPNIGECWGGGKEGTATATIMIMGDTCTRGCSFCAVKTSRTPAALDPLEPEHVAQAITEWGLDYVVLTSVDRDDLEDQGSEHFAQTVRGLKTRKPSLLVECLTPDFRGQANLIEHVATSGLDVYAHNLETVERMQRRVRDHRAGYSQSLFVLEHAKKCEPTLLTKTSLMLGVGERPEDIRATLRDLRTAGVDVVTFGQYLRPTKRHMPVKAFVTPERFQEWQVEAEGLGFKYVASGPLVRSSYKAGEFFLKGLLKKQEE 393
            +RL  LR+ L EE  AG   +     + + +     +VAP     R+      KP WL A P  GENY RL+STV+ L L+TVC EA+CPNIGECWGGGK+G ATATIM+MGDTCTRGCSFCAVKTS+ P  LD  EPE VA AI  WGLDY+V TSVDRDD EDQG+ HFA+TVR L+ + P++L+ECLTPDF G   LI+ VATSGL+V+AHNLETVER+QRRVRD+RA Y QSL VLE AK     LLTKTSLMLGVGER ED+  TLRDLR +GVDVVTFGQYLRP+ +HMPV ++V+P+ F EWQ  AE +GF YVASGP+VRSSYKAGE+++K LL+ ++E
Sbjct:   42 SRLAALRECLSEE--AGQDPTSPVQRLSLEDFAFDTEVAPGVKPSRKPSASHRKPKWLNAQPTTGENYERLRSTVKDLGLSTVCVEAKCPNIGECWGGGKDGIATATIMLMGDTCTRGCSFCAVKTSKKPKPLDSEEPEKVAAAIAAWGLDYIVFTSVDRDDYEDQGAGHFAKTVRTLRAKLPTILIECLTPDFTGNDKLIDQVATSGLNVFAHNLETVERLQRRVRDYRANYKQSLHVLERAKVAASHLLTKTSLMLGVGERNEDVFQTLRDLRNSGVDVVTFGQYLRPSTKHMPVSSYVSPDAFAEWQKVAEQMGFLYVASGPMVRSSYKAGEYYMKNLLRIRKE 386

[Close]

BLAST of NO05G02260 vs. NCBI_GenBank
Match: GAX26030.1 (lipoyl synthase [Fistulifera solaris])

HSP 1 Score: 429.9 bits (1104), Expect = 8.700e-117
Identity = 224/353 (63.46%), Postives = 259/353 (73.37%), Query Frame = 0

Query:   44 ASYSSARLENLRKQLEEEDAAGIAMSLIPPTIHVPETVSSDDV-APAPRRQKRMEPKPSWLKAVPAEGENYLRLKSTVRKLKLATVCEEARCPNIGECWGGGKEGTATATIMIMGDTCTRGCSFCAVKTSRTPAALDPLEPEHVAQAITEWGLDYVVLTSVDRDDLEDQGSEHFAQTVRGLKTRKPSLLVECLTPDFRGQANLIEHVATSGLDVYAHNLETVERMQRRVRDHRAGYSQSLFVLEHAK--KCEPTLLTKTSLMLGVGERPEDIRATLRDLRTAGVDVVTFGQYLRPTKRHMPVKAFVTPERFQEWQVEAEGLGFKYVASGPLVRSSYKAGEFFLKGLLKKQEER 394
            AS    RL +LR QL  +DA          TI      S   V   A  R  ++ PKP WLKA PA  +NY  L++TVR+L LATVCEEARCPNIGECWGG     ATATIMIMGDTCTRGC FC+V TSR PA LDP EPE V+ AI +WGLDYVVLTSVDRDDL DQGS+HF   V+ LK +KP L VE LTPDFRG  +LI  VATSGLDVYAHN+ETVE +  RVRD RAGY QSL VLE+ K    E  ++TKTSLMLG+GE  E +R TLRDLR+  VDVVTFGQYL+PTK+H+ VK +VTPE+F+EWQ EAE +GF YVASGPLVRSSYKAGEFFLK  LK+++++
Sbjct:   32 ASTGVDRLASLRAQLAADDA----------TIDDFAKQSDRPVRRKAAPRSSKVLPKPRWLKAAPATSDNYKELRNTVRELGLATVCEEARCPNIGECWGGSDSEVATATIMIMGDTCTRGCRFCSVATSRNPAPLDPEEPEKVSTAIAKWGLDYVVLTSVDRDDLPDQGSQHFRSVVQRLKEKKPGLWVEALTPDFRGDRDLIRAVATSGLDVYAHNVETVEDLTSRVRDRRAGYRQSLDVLEYVKSLSLEKDVITKTSLMLGLGETDEQVRQTLRDLRSVSVDVVTFGQYLQPTKKHLAVKEYVTPEKFEEWQKEAEAMGFLYVASGPLVRSSYKAGEFFLKNYLKQRQQQ 374

The following BLAST results are available for this feature:

BLAST of NO05G02260 vs. NCBI_GenBank

BLAST of NO05G02260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_008911775.1	2.400e-122	63.43	lipoyl synthase, mitochondrial [Phytophthora paras...	[more]
XP_009531563.1	3.100e-122	60.26	hypothetical protein PHYSODRAFT_562522 [Phytophtho...	[more]
OQS02644.1	3.100e-122	62.81	lipoic acid synthetase, mitochondrial precursor [T...	[more]
ETL84350.1	1.200e-121	63.14	lipoyl synthase, mitochondrial [Phytophthora paras...	[more]
GAY01327.1	1.200e-121	61.70	lipoyl synthase, mitochondrial [Pythium insidiosum...	[more]
XP_002899048.1	2.600e-121	63.43	lipoic acid synthetase, mitochondrial precursor [P...	[more]
POM65667.1	2.100e-118	72.28	Lipoyl synthase, mitochondrial, partial [Phytophth...	[more]
OEU12380.1	2.700e-118	68.08	lipoic acid synthetase [Fragilariopsis cylindrus C...	[more]
XP_024575039.1	1.000e-117	62.82	lipoyl mitochondrial [Plasmopara halstedii] >CEG38...	[more]
GAX26030.1	8.700e-117	63.46	lipoyl synthase [Fistulifera solaris]	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL086	nonsL086	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR092	ncniR092	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR118	ngnoR118	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK003640	NSK003640	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO05G02260.1	NO05G02260.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584250	gene_3028	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100004g150	gene2396	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO05G02260.1	NO05G02260.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO05G02260 ID=NO05G02260|Name=NO05G02260|organism=Nannochloropsis oceanica|type=gene|length=1800bp
ACCAACAGGAGGTGCAGTCGTACCCACGACGTAAAATCGTTGCCGTCTGC
TTGCTACACCAAGAGCAGCACTCTTCAAGCGTCATGAGAGCTGTTGCTCG
CCATGCACCGTGTCGAAGTCTGCCTTATGGACAGATCCTCACCCGGCCAG
CACCAGCGGCAGCAACATTACCAGAAGCAGCATTACCGCGTAGTTGCAAG
GCCAGGGGCTTGGCTTCTTATTCGTCCGCACGCCTGGAAAACCTGCGCAA
GCAGCTGGAAGAAGAGGACGCCGCGGGGATTGCCATGTCCCTTATCCCAC
CTACCATTCATGTGCCAGAGACTGTCAGTTCCGACGATGTTGCCCCTGCT
CCACGACGACAAAAGCGCATGGAACCGAAGCCTAgtacgtgatgggatca
ttgtggttgcacagcttgatggcatggtgctgaccctcgatgtccccccc
ccaacccctccgacctcctcacttcagGTTGGCTGAAGGCCGTGCCCGCC
GAAGGCGAGAACTACCTCCGGTTGAAGAGTACGgtacgtattgatgaata
tcgaattgagtatgtcattataccctggcttctcaaaatcgccaatcccc
ttctcgtattctcatctcccattctatcccgcgccgcctagGTCCGGAAG
CTTAAGCTGGCAACGGTGTGCGAGGAGGCACGCTGCCCAAACATCGGGGA
GTGTTGGGGAGGTGGTAAGGAGGGCACGGCGACGGCGACGATCATGATTA
TGGGCGACACGTGCACGCGAGGCTGCAGCTTTTGCGCCGTTAAGACAAGC
CGAACACCAGCGGCACTGGgtacgtagatgaaggcgtataaatggacaga
gacgaagaaacgacggatttgtttaccaaattgccttgtttcctcatttt
acttcgaattgacacgatgcagACCCATTGGAGCCGGAGCACGTTGCACA
AGCCATAACAGAGTGGGGCTTGGACTACGTCGTCTTGACCAGgtaaggat
acgccgactctccatttcttttcacgacaccaccccacctccatgtctac
aaaaccaaccattgtctttcattgcaattgtcatcctcacagCGTGGATC
GGGACGACTTGGAAGACCAAGGTTCAGAGCATTTCGCCCAAACCGTTCGA
GGGCTCAAGACCCGCAAGCCCTCGCTGCTCGTGGAATGCCTGACACCTGA
TTTTCGCGGCCAAGCTAATCTCATCGAGCATGTGGCCACCTCGGGCCTGG
ACGTATATGCACACAACCTTGAGACGGTGGAGCGGATGCAGCGCCGCGTG
CGGGACCACCGGGCAGGCTACTCCCAATCACTCTTCGTTCTGGAGCACGC
CAAGAAGTGTGAGCCGACCCTCTTGACCAAAACCTCGCTCATGCTCGGCG
TGGGGGAACGGCCCGAGGACATCCGTGCCACTCTGCGAGATCTGAGGACA
GCAGGCGTGGACGTCGTCACCTTCGGACAGTACCTGCGGCCTACCAAGCG
ACACATGCCTGTTAAAGCTTTCGTCACACCGGAGCGATTCCAGGAGTGGC
AGGTGGAGGCGGAGGGGCTGGGGTTCAAGTATGTCGCCTCGGGACCGCTC
GTCCGCTCTTCCTACAAAGCGGGGGAGTTTTTTTTGAAGGGGCTTCTCAA
GAAGCAAGAAGAAAGATGAAGACGGCGCCCTCCCAGAAGAGGAGCAGTGG
CAAAAGGAGCAGGAGCGTGTTGGCAAAATGTAAACAAATCAAGACTACGA
AATAAGGAATCATAGGTGACATACAAAAACACAACCACACGGTGTATCAT

protein sequence of NO05G02260.1

>NO05G02260.1-protein ID=NO05G02260.1-protein|Name=NO05G02260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MRAVARHAPCRSLPYGQILTRPAPAAATLPEAALPRSCKARGLASYSSAR
LENLRKQLEEEDAAGIAMSLIPPTIHVPETVSSDDVAPAPRRQKRMEPKP
SWLKAVPAEGENYLRLKSTVRKLKLATVCEEARCPNIGECWGGGKEGTAT
ATIMIMGDTCTRGCSFCAVKTSRTPAALDPLEPEHVAQAITEWGLDYVVL
TSVDRDDLEDQGSEHFAQTVRGLKTRKPSLLVECLTPDFRGQANLIEHVA
TSGLDVYAHNLETVERMQRRVRDHRAGYSQSLFVLEHAKKCEPTLLTKTS
LMLGVGERPEDIRATLRDLRTAGVDVVTFGQYLRPTKRHMPVKAFVTPER
FQEWQVEAEGLGFKYVASGPLVRSSYKAGEFFLKGLLKKQEER*

Synonyms

Publications