NO05G02260.1, NO05G02260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02260.1
Unique NameNO05G02260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1396
Alignment locationchr5:600321..602120 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:600321..602120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02260.1 vs.
Match: EWM28169.1 (lipoic acid synthetase [Nannochloropsis gaditana])

HSP 1 Score: 570.1 bits (1468), Expect = 5.400e-159
Identity = 283/344 (82.27%), Postives = 305/344 (88.66%), Query Frame = 0 
Query:   47 SSARLENLRKQLEEEDAAGIAMSLIPPTIHVPETVSSDDVAPAPRRQKRMEPKPSWLKAVPAEGENYLRLKSTVRKLKLATVCEEARCPNIGECWGGGKEGTATATIMIMGDTCTRGCSFCAVKTSRTPAALDPLEPEHVAQAITEWGLDYVVLTSVDRDDLEDQGSEHFAQTVRGLKTRKPSLLVECLTPDFRGQANLIEHVATSGLDVYAHNLETVERMQRRVRDHRAGYSQSLFVLEHAKKCEPTLLTKTSLMLGVGERPEDIRATLRDLRTAGVDVVTFGQYLRPTKRHMPVKAFVTPERFQEWQVEAEGLGFKYVASGPLVRSSYKAGEFFLKGLLKKQ 391
            SS RL+ LR++L+EEDAA       P    +P+        P  RR+KR EPKP WLKAVPAEGENYLRLK+TVRKLKLATVCEEARCPNIGECWGGGK+GTATATIMIMGDTCTRGCSFCAVKTSRTPA LDPLEPEHVA+AI EWGLDYVVLTSVDRDDL DQGSEHFA+TVRGLK RKP+LLVECLTPDFRGQA+LIE VA SGLDVYAHNLETVER+QRRVRDHRAGYSQSLFVLEHAKK  P LLTKTSLMLGVGERPED+RATLRDLRTAGVDVVTFGQYLRPTKRHMPV+A++TP +FQ WQ EAE L FKYVASGPLVRSSYKAGEFFLKG+LK++
Sbjct:   44 SSPRLDRLREKLKEEDAAHAGTC--PTHGALPDKEVPKATFPVARRRKRSEPKPEWLKAVPAEGENYLRLKNTVRKLKLATVCEEARCPNIGECWGGGKDGTATATIMIMGDTCTRGCSFCAVKTSRTPAPLDPLEPEHVARAIAEWGLDYVVLTSVDRDDLVDQGSEHFAKTVRGLKARKPTLLVECLTPDFRGQASLIERVALSGLDVYAHNLETVERLQRRVRDHRAGYSQSLFVLEHAKKRAPKLLTKTSLMLGVGERPEDVRATLRDLRTAGVDVVTFGQYLRPTKRHMPVQAYITPAQFQAWQAEAEALNFKYVASGPLVRSSYKAGEFFLKGVLKQR 385
The following BLAST results are available for this feature:
BLAST of NO05G02260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28169.15.400e-15982.27lipoic acid synthetase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02260NO05G02260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02260.1NO05G02260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02260.1.cds1NO05G02260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02260.1.cds2NO05G02260.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02260.1.cds3NO05G02260.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02260.1.cds4NO05G02260.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02260.1.cds5NO05G02260.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02260.1 ID=NO05G02260.1|Name=NO05G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1396bp
ACCAACAGGAGGTGCAGTCGTACCCACGACGTAAAATCGTTGCCGTCTGC
TTGCTACACCAAGAGCAGCACTCTTCAAGCGTCATGAGAGCTGTTGCTCG
CCATGCACCGTGTCGAAGTCTGCCTTATGGACAGATCCTCACCCGGCCAG
CACCAGCGGCAGCAACATTACCAGAAGCAGCATTACCGCGTAGTTGCAAG
GCCAGGGGCTTGGCTTCTTATTCGTCCGCACGCCTGGAAAACCTGCGCAA
GCAGCTGGAAGAAGAGGACGCCGCGGGGATTGCCATGTCCCTTATCCCAC
CTACCATTCATGTGCCAGAGACTGTCAGTTCCGACGATGTTGCCCCTGCT
CCACGACGACAAAAGCGCATGGAACCGAAGCCTAGTTGGCTGAAGGCCGT
GCCCGCCGAAGGCGAGAACTACCTCCGGTTGAAGAGTACGGTCCGGAAGC
TTAAGCTGGCAACGGTGTGCGAGGAGGCACGCTGCCCAAACATCGGGGAG
TGTTGGGGAGGTGGTAAGGAGGGCACGGCGACGGCGACGATCATGATTAT
GGGCGACACGTGCACGCGAGGCTGCAGCTTTTGCGCCGTTAAGACAAGCC
GAACACCAGCGGCACTGGACCCATTGGAGCCGGAGCACGTTGCACAAGCC
ATAACAGAGTGGGGCTTGGACTACGTCGTCTTGACCAGCGTGGATCGGGA
CGACTTGGAAGACCAAGGTTCAGAGCATTTCGCCCAAACCGTTCGAGGGC
TCAAGACCCGCAAGCCCTCGCTGCTCGTGGAATGCCTGACACCTGATTTT
CGCGGCCAAGCTAATCTCATCGAGCATGTGGCCACCTCGGGCCTGGACGT
ATATGCACACAACCTTGAGACGGTGGAGCGGATGCAGCGCCGCGTGCGGG
ACCACCGGGCAGGCTACTCCCAATCACTCTTCGTTCTGGAGCACGCCAAG
AAGTGTGAGCCGACCCTCTTGACCAAAACCTCGCTCATGCTCGGCGTGGG
GGAACGGCCCGAGGACATCCGTGCCACTCTGCGAGATCTGAGGACAGCAG
GCGTGGACGTCGTCACCTTCGGACAGTACCTGCGGCCTACCAAGCGACAC
ATGCCTGTTAAAGCTTTCGTCACACCGGAGCGATTCCAGGAGTGGCAGGT
GGAGGCGGAGGGGCTGGGGTTCAAGTATGTCGCCTCGGGACCGCTCGTCC
GCTCTTCCTACAAAGCGGGGGAGTTTTTTTTGAAGGGGCTTCTCAAGAAG
CAAGAAGAAAGATGAAGACGGCGCCCTCCCAGAAGAGGAGCAGTGGCAAA
AGGAGCAGGAGCGTGTTGGCAAAATGTAAACAAATCAAGACTACGAAATA
AGGAATCATAGGTGACATACAAAAACACAACCACACGGTGTATCAT
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protein sequence of NO05G02260.1

>NO05G02260.1-protein ID=NO05G02260.1-protein|Name=NO05G02260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MRAVARHAPCRSLPYGQILTRPAPAAATLPEAALPRSCKARGLASYSSAR
LENLRKQLEEEDAAGIAMSLIPPTIHVPETVSSDDVAPAPRRQKRMEPKP
SWLKAVPAEGENYLRLKSTVRKLKLATVCEEARCPNIGECWGGGKEGTAT
ATIMIMGDTCTRGCSFCAVKTSRTPAALDPLEPEHVAQAITEWGLDYVVL
TSVDRDDLEDQGSEHFAQTVRGLKTRKPSLLVECLTPDFRGQANLIEHVA
TSGLDVYAHNLETVERMQRRVRDHRAGYSQSLFVLEHAKKCEPTLLTKTS
LMLGVGERPEDIRATLRDLRTAGVDVVTFGQYLRPTKRHMPVKAFVTPER
FQEWQVEAEGLGFKYVASGPLVRSSYKAGEFFLKGLLKKQEER*
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mRNA from alignment at chr5:600321..602120+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02260.1 ID=NO05G02260.1|Name=NO05G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1800bp|location=Sequence derived from alignment at chr5:600321..602120+ (Nannochloropsis oceanica)
ACCAACAGGAGGTGCAGTCGTACCCACGACGTAAAATCGTTGCCGTCTGC
TTGCTACACCAAGAGCAGCACTCTTCAAGCGTCATGAGAGCTGTTGCTCG
CCATGCACCGTGTCGAAGTCTGCCTTATGGACAGATCCTCACCCGGCCAG
CACCAGCGGCAGCAACATTACCAGAAGCAGCATTACCGCGTAGTTGCAAG
GCCAGGGGCTTGGCTTCTTATTCGTCCGCACGCCTGGAAAACCTGCGCAA
GCAGCTGGAAGAAGAGGACGCCGCGGGGATTGCCATGTCCCTTATCCCAC
CTACCATTCATGTGCCAGAGACTGTCAGTTCCGACGATGTTGCCCCTGCT
CCACGACGACAAAAGCGCATGGAACCGAAGCCTAGTACGTGATGGGATCA
TTGTGGTTGCACAGCTTGATGGCATGGTGCTGACCCTCGATGTCCCCCCC
CCAACCCCTCCGACCTCCTCACTTCAGGTTGGCTGAAGGCCGTGCCCGCC
GAAGGCGAGAACTACCTCCGGTTGAAGAGTACGGTACGTATTGATGAATA
TCGAATTGAGTATGTCATTATACCCTGGCTTCTCAAAATCGCCAATCCCC
TTCTCGTATTCTCATCTCCCATTCTATCCCGCGCCGCCTAGGTCCGGAAG
CTTAAGCTGGCAACGGTGTGCGAGGAGGCACGCTGCCCAAACATCGGGGA
GTGTTGGGGAGGTGGTAAGGAGGGCACGGCGACGGCGACGATCATGATTA
TGGGCGACACGTGCACGCGAGGCTGCAGCTTTTGCGCCGTTAAGACAAGC
CGAACACCAGCGGCACTGGGTACGTAGATGAAGGCGTATAAATGGACAGA
GACGAAGAAACGACGGATTTGTTTACCAAATTGCCTTGTTTCCTCATTTT
ACTTCGAATTGACACGATGCAGACCCATTGGAGCCGGAGCACGTTGCACA
AGCCATAACAGAGTGGGGCTTGGACTACGTCGTCTTGACCAGGTAAGGAT
ACGCCGACTCTCCATTTCTTTTCACGACACCACCCCACCTCCATGTCTAC
AAAACCAACCATTGTCTTTCATTGCAATTGTCATCCTCACAGCGTGGATC
GGGACGACTTGGAAGACCAAGGTTCAGAGCATTTCGCCCAAACCGTTCGA
GGGCTCAAGACCCGCAAGCCCTCGCTGCTCGTGGAATGCCTGACACCTGA
TTTTCGCGGCCAAGCTAATCTCATCGAGCATGTGGCCACCTCGGGCCTGG
ACGTATATGCACACAACCTTGAGACGGTGGAGCGGATGCAGCGCCGCGTG
CGGGACCACCGGGCAGGCTACTCCCAATCACTCTTCGTTCTGGAGCACGC
CAAGAAGTGTGAGCCGACCCTCTTGACCAAAACCTCGCTCATGCTCGGCG
TGGGGGAACGGCCCGAGGACATCCGTGCCACTCTGCGAGATCTGAGGACA
GCAGGCGTGGACGTCGTCACCTTCGGACAGTACCTGCGGCCTACCAAGCG
ACACATGCCTGTTAAAGCTTTCGTCACACCGGAGCGATTCCAGGAGTGGC
AGGTGGAGGCGGAGGGGCTGGGGTTCAAGTATGTCGCCTCGGGACCGCTC
GTCCGCTCTTCCTACAAAGCGGGGGAGTTTTTTTTGAAGGGGCTTCTCAA
GAAGCAAGAAGAAAGATGAAGACGGCGCCCTCCCAGAAGAGGAGCAGTGG
CAAAAGGAGCAGGAGCGTGTTGGCAAAATGTAAACAAATCAAGACTACGA
AATAAGGAATCATAGGTGACATACAAAAACACAACCACACGGTGTATCAT
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Coding sequence (CDS) from alignment at chr5:600321..602120+

>NO05G02260.1 ID=NO05G02260.1|Name=NO05G02260.1|organism=Nannochloropsis oceanica|type=CDS|length=1182bp|location=Sequence derived from alignment at chr5:600321..602120+ (Nannochloropsis oceanica)
ATGAGAGCTGTTGCTCGCCATGCACCGTGTCGAAGTCTGCCTTATGGACA
GATCCTCACCCGGCCAGCACCAGCGGCAGCAACATTACCAGAAGCAGCAT
TACCGCGTAGTTGCAAGGCCAGGGGCTTGGCTTCTTATTCGTCCGCACGC
CTGGAAAACCTGCGCAAGCAGCTGGAAGAAGAGGACGCCGCGGGGATTGC
CATGTCCCTTATCCCACCTACCATTCATGTGCCAGAGACTGTCAGTTCCG
ACGATGTTGCCCCTGCTCCACGACGACAAAAGCGCATGGAACCGAAGCCT
AGTTGGCTGAAGGCCGTGCCCGCCGAAGGCGAGAACTACCTCCGGTTGAA
GAGTACGGTCCGGAAGCTTAAGCTGGCAACGGTGTGCGAGGAGGCACGCT
GCCCAAACATCGGGGAGTGTTGGGGAGGTGGTAAGGAGGGCACGGCGACG
GCGACGATCATGATTATGGGCGACACGTGCACGCGAGGCTGCAGCTTTTG
CGCCGTTAAGACAAGCCGAACACCAGCGGCACTGGACCCATTGGAGCCGG
AGCACGTTGCACAAGCCATAACAGAGTGGGGCTTGGACTACGTCGTCTTG
ACCAGCGTGGATCGGGACGACTTGGAAGACCAAGGTTCAGAGCATTTCGC
CCAAACCGTTCGAGGGCTCAAGACCCGCAAGCCCTCGCTGCTCGTGGAAT
GCCTGACACCTGATTTTCGCGGCCAAGCTAATCTCATCGAGCATGTGGCC
ACCTCGGGCCTGGACGTATATGCACACAACCTTGAGACGGTGGAGCGGAT
GCAGCGCCGCGTGCGGGACCACCGGGCAGGCTACTCCCAATCACTCTTCG
TTCTGGAGCACGCCAAGAAGTGTGAGCCGACCCTCTTGACCAAAACCTCG
CTCATGCTCGGCGTGGGGGAACGGCCCGAGGACATCCGTGCCACTCTGCG
AGATCTGAGGACAGCAGGCGTGGACGTCGTCACCTTCGGACAGTACCTGC
GGCCTACCAAGCGACACATGCCTGTTAAAGCTTTCGTCACACCGGAGCGA
TTCCAGGAGTGGCAGGTGGAGGCGGAGGGGCTGGGGTTCAAGTATGTCGC
CTCGGGACCGCTCGTCCGCTCTTCCTACAAAGCGGGGGAGTTTTTTTTGA
AGGGGCTTCTCAAGAAGCAAGAAGAAAGATGA
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Synonyms
Publications