NO05G01850, NO05G01850 (gene) Nannochloropsis oceanica

Overview
NameNO05G01850
Unique NameNO05G01850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1382
Alignment locationchr5:509991..511372 -

Link to JBrowse

Properties
Property NameValue
Description10 kDa chaperonin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:509991..511372 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0009987cellular process
Vocabulary: INTERPRO
TermDefinition
IPR011032GroES-like
IPR020818Chaperonin_Cpn10
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
Homology
[Close]
BLAST of NO05G01850 vs. NCBI_GenBank
Match: KFX90641.1 (hypothetical protein V490_06349 [Pseudogymnoascus sp. VKM F-3557])

HSP 1 Score: 123.2 bits (308), Expect = 4.400e-25
Identity = 57/95 (60.00%), Postives = 74/95 (77.89%), Query Frame = 0 
Query:    2 SLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGGRKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGK 97
            S++ L PL DR+LVQRI  +TQTAGG+FLPE+ + + NEA+V+AVGPGG   +G  + PSVK GD VL+P+YGG  VK+GE+EY LFRD +LL K
Sbjct:  272 SIKSLAPLLDRVLVQRIKAQTQTAGGIFLPESSVKELNEARVLAVGPGGLDKEGKTVKPSVKAGDKVLIPQYGGSPVKVGEEEYALFRDYELLAK 366
[Close]
BLAST of NO05G01850 vs. NCBI_GenBank
Match: KFY29041.1 (hypothetical protein V491_00210 [Pseudogymnoascus sp. VKM F-3775])

HSP 1 Score: 123.2 bits (308), Expect = 4.400e-25
Identity = 57/95 (60.00%), Postives = 74/95 (77.89%), Query Frame = 0 
Query:    2 SLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGGRKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGK 97
            S++ L PL DR+LVQRI  +TQTAGG+FLPE+ + + NEA+V+AVGPGG   +G  + PSVK GD VL+P+YGG  VK+GE+EY LFRD +LL K
Sbjct:  215 SIKSLAPLLDRVLVQRIKAQTQTAGGIFLPESSVKELNEARVLAVGPGGLDKEGKTVKPSVKAGDKVLIPQYGGSPVKVGEEEYALFRDYELLAK 309
[Close]
BLAST of NO05G01850 vs. NCBI_GenBank
Match: KFY49787.1 (hypothetical protein V495_00461 [Pseudogymnoascus sp. VKM F-4514 (FW-929)])

HSP 1 Score: 123.2 bits (308), Expect = 4.400e-25
Identity = 57/95 (60.00%), Postives = 74/95 (77.89%), Query Frame = 0 
Query:    2 SLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGGRKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGK 97
            S++ L PL DR+LVQRI  +TQTAGG+FLPE+ + + NEA+V+AVGPGG   +G  + PSVK GD VL+P+YGG  VK+GE+EY LFRD +LL K
Sbjct:   56 SIKSLAPLLDRVLVQRIKAQTQTAGGIFLPESSVKELNEARVLAVGPGGLDKEGKTVKPSVKAGDKVLIPQYGGSPVKVGEEEYALFRDYELLAK 150
[Close]
BLAST of NO05G01850 vs. NCBI_GenBank
Match: KFY61562.1 (hypothetical protein V497_02875 [Pseudogymnoascus sp. VKM F-4516 (FW-969)])

HSP 1 Score: 123.2 bits (308), Expect = 4.400e-25
Identity = 57/95 (60.00%), Postives = 74/95 (77.89%), Query Frame = 0 
Query:    2 SLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGGRKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGK 97
            S++ L PL DR+LVQRI  +TQTAGG+FLPE+ + + NEA+V+AVGPGG   +G  + PSVK GD VL+P+YGG  VK+GE+EY LFRD +LL K
Sbjct:   56 SIKSLAPLLDRVLVQRIKAQTQTAGGIFLPESSVKELNEARVLAVGPGGLDKEGKTVKPSVKAGDKVLIPQYGGSPVKVGEEEYALFRDYELLAK 150
[Close]
BLAST of NO05G01850 vs. NCBI_GenBank
Match: XP_008614536.1 (chaperonin GroS [Saprolegnia diclina VS20] >EQC32134.1 chaperonin GroS [Saprolegnia diclina VS20])

HSP 1 Score: 122.9 bits (307), Expect = 5.700e-25
Identity = 55/96 (57.29%), Postives = 75/96 (78.12%), Query Frame = 0 
Query:    2 SLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGGRKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGKF 98
            SLRKL+PL +R+L+++  P  +TAGG++LP++     NE +V+AVGPG R  +G++IP +V  GD VLLPEYGG  +KLGEDE+ LFRDED+LGKF
Sbjct:    3 SLRKLLPLGNRVLIKKAEPVLKTAGGIYLPDSAKSTQNEGEVVAVGPGARNHEGTIIPMNVAVGDKVLLPEYGGSLLKLGEDEFHLFRDEDILGKF 98
[Close]
BLAST of NO05G01850 vs. NCBI_GenBank
Match: OQR82956.1 (10 kDa chaperonin [Achlya hypogyna])

HSP 1 Score: 122.9 bits (307), Expect = 5.700e-25
Identity = 55/96 (57.29%), Postives = 75/96 (78.12%), Query Frame = 0 
Query:    2 SLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGGRKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGKF 98
            SLRKL+PL +R+L+++  P  +TAGG++LP++     NE +V+AVGPG R  +G++IP SV  GD VLLPEYGG  +KLG+DE+ LFRDED+LGKF
Sbjct:    3 SLRKLLPLGNRVLIKKAEPVLKTAGGIYLPDSAKTTQNEGEVVAVGPGARNHEGTIIPVSVAVGDKVLLPEYGGSVLKLGDDEFHLFRDEDILGKF 98
[Close]
BLAST of NO05G01850 vs. NCBI_GenBank
Match: XP_007805696.1 (heat shock protein [Endocarpon pusillum Z07020] >ERF68712.1 heat shock protein [Endocarpon pusillum Z07020])

HSP 1 Score: 122.5 bits (306), Expect = 7.500e-25
Identity = 56/95 (58.95%), Postives = 74/95 (77.89%), Query Frame = 0 
Query:    2 SLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGGRKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGK 97
            S++ L+PL DR+LVQR+  + +TAGG+FLPE+ + + NEAKV+AVGPGG   +G  IP SV EGD VL+P+YGG  VK+GE+EY LFRD +LL K
Sbjct:    9 SIKSLVPLLDRVLVQRVKAEAKTAGGIFLPESSVKELNEAKVLAVGPGGLDKEGKRIPMSVGEGDKVLIPQYGGSPVKVGEEEYSLFRDHELLAK 103
[Close]
BLAST of NO05G01850 vs. NCBI_GenBank
Match: KFY83697.1 (hypothetical protein V500_09965 [Pseudogymnoascus sp. VKM F-4518 (FW-2643)])

HSP 1 Score: 122.5 bits (306), Expect = 7.500e-25
Identity = 57/95 (60.00%), Postives = 74/95 (77.89%), Query Frame = 0 
Query:    2 SLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGGRKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGK 97
            S++ L PL DR+LVQRI  +TQTAGG+FLPE+ + + NEA+V+AVGPGG   +G  + PSVK GD VL+P+YGG  VK+GE+EY LFRD +LL K
Sbjct:  262 SIKSLAPLLDRVLVQRIKAQTQTAGGIFLPESSVKELNEARVLAVGPGGLDKEGKNVKPSVKAGDKVLIPQYGGSPVKVGEEEYALFRDYELLAK 356
[Close]
BLAST of NO05G01850 vs. NCBI_GenBank
Match: KFZ04004.1 (hypothetical protein V502_10486 [Pseudogymnoascus sp. VKM F-4520 (FW-2644)])

HSP 1 Score: 122.5 bits (306), Expect = 7.500e-25
Identity = 57/95 (60.00%), Postives = 74/95 (77.89%), Query Frame = 0 
Query:    2 SLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGGRKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGK 97
            S++ L PL DR+LVQRI  +TQTAGG+FLPE+ + + NEA+V+AVGPGG   +G  + PSVK GD VL+P+YGG  VK+GE+EY LFRD +LL K
Sbjct:   70 SIKSLAPLLDRVLVQRIKAQTQTAGGIFLPESSVKELNEARVLAVGPGGLDKEGKNVKPSVKAGDKVLIPQYGGSPVKVGEEEYALFRDYELLAK 164
[Close]
BLAST of NO05G01850 vs. NCBI_GenBank
Match: XP_013901832.1 (chaperonin [Monoraphidium neglectum] >KIZ02813.1 chaperonin [Monoraphidium neglectum])

HSP 1 Score: 122.5 bits (306), Expect = 7.500e-25
Identity = 58/95 (61.05%), Postives = 74/95 (77.89%), Query Frame = 0 
Query:    1 MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGGRKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLG 96
            M+ R+LIPL DR+L++RI+  T++AGGV LPE+ + K NE  V+AVGPG R  DG L+PPSVKEGD VLLPEYGG  VKL + E  L+RD++LLG
Sbjct:    1 MAARRLIPLLDRVLIERIIAPTKSAGGVLLPESAVTKVNEGVVLAVGPGRRTKDGDLLPPSVKEGDKVLLPEYGGSLVKLNDKELFLYRDDELLG 95
The following BLAST results are available for this feature:
BLAST of NO05G01850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
KFX90641.14.400e-2560.00hypothetical protein V490_06349 [Pseudogymnoascus ... [more]
KFY29041.14.400e-2560.00hypothetical protein V491_00210 [Pseudogymnoascus ... [more]
KFY49787.14.400e-2560.00hypothetical protein V495_00461 [Pseudogymnoascus ... [more]
KFY61562.14.400e-2560.00hypothetical protein V497_02875 [Pseudogymnoascus ... [more]
XP_008614536.15.700e-2557.29chaperonin GroS [Saprolegnia diclina VS20] >EQC321... [more]
OQR82956.15.700e-2557.2910 kDa chaperonin [Achlya hypogyna][more]
XP_007805696.17.500e-2558.95heat shock protein [Endocarpon pusillum Z07020] >E... [more]
KFY83697.17.500e-2560.00hypothetical protein V500_09965 [Pseudogymnoascus ... [more]
KFZ04004.17.500e-2560.00hypothetical protein V502_10486 [Pseudogymnoascus ... [more]
XP_013901832.17.500e-2561.05chaperonin [Monoraphidium neglectum] >KIZ02813.1 c... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003682NSK003682Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01850.1NO05G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584046gene_2976Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g110gene2362Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01850.1NO05G01850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01850 ID=NO05G01850|Name=NO05G01850|organism=Nannochloropsis oceanica|type=gene|length=1382bp
GTGTGCGACCGCGATGCGAGGAGGATTTGCGAGGCAATGCTTCCTTGAGG
GTCGCAACCGATCATCCTTCTTAGCGATTCTAATATTACAACGCCCACCA
CAAGAAGAACAATCGAGAAAGAGAGCGGAGGCAAGTGCGCCGCTTAGGTC
TGATCTCGAGTGAAAGAGAACGTACAGGAGGATGAGATGGTGTAGCCAGC
TACTGAATTGATCTCTCACCATTTTTCACTCCGCTCTGCCCTACAACACA
CAGCCTCTCACCCGAGACTCCCCCTTTAGACGACCTCCCCAGCTCCACTC
AGTCAGCCATGgtaggtacttttagggggggtcagagactggaataaata
acttgtgagtgaatagtttataacatgagcaacgttcagggaaagaggag
ggctggacacttgtacggttcgaggagggattgatacagcgcgagaatgt
tgtgcgtgagacctaggatagaggaggctggggctgatgcatgacgatga
gtatgcacagatggagagccgagagacaactcactgcagctcgacaatga
gcaccaatgtcgctctcagcgccagcttatacgagtgctgtgtctgcgag
gtgccaggcttgtcttgtccgccccttgccttcgccctccccagtacgcg
actccatgtcgtatgcctttccccggtttaccttagtgcctttcaagcgc
tactatcactcccgtgccttcatcacttatgctcaatcacgttctccatc
atctctacctgctccccttccaccatactcacccacagTCTTTGCGTAAG
CTTATCCCCCTGGCAGACCGCATTCTTGTGCAGCGCATCCTGCCGAAGAC
CCAAACGGCCGGCGGTGTCTTCCTCCCCGAAACCAAACTCGACAAGCCGA
ATGAAGCCAAAGTGATCGCCGTGGGTCCCGGTGGACGGAAGGCAGACGGG
TCGCTGATTCCCCCGAGCGTGAAGGAAGGGGACACGGTGTTGTTGCCCGA
GTACGGAGGGCACACGGTTAAGCTGGGAGAGGATGAGTACCAGTTGTTTA
GGGATGAGGATTTGCTGGGGAAGTTTACGTAGATCTGAGTAAGGGTAAAA
GGGAAAGAGGAAATGAAGGATGATGATATCCGGAGGGATAGCGCAGTGTT
TGGGGCCGATTTTAAGGACAAGGTCGAAGACAATGGGAGCACGGACATAG
GGAGCGATGGACGGGGGCATGGAGGGTCGGGAATCGAGAAGGAGGAGGAG
GAGGGGGAAGATGAGGAGGAGGTGAAGGAGAAGATGATTGACGGAATGTA
GTATACCTTCGAACATGATGGCCCATATTTCTTCGAAAGAAACAAACTTA
CCATCGACCCACACCCCGAAACCGAATCCAAT
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protein sequence of NO05G01850.1

>NO05G01850.1-protein ID=NO05G01850.1-protein|Name=NO05G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGG
RKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGKFT*
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Synonyms
Publications