NO05G01850.1, NO05G01850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01850.1
Unique NameNO05G01850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length905
Alignment locationchr5:509991..511372 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:509991..511372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G01850.1 vs.
Match: XP_005852745.1 (chaperonin 10 [Nannochloropsis gaditana CCMP526]; EKU23088.1 chaperonin 10 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 190.3 bits (482), Expect = 2.900e-45
Identity = 93/98 (94.90%), Postives = 96/98 (97.96%), Query Frame = 0
Query:    1 MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGGRKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGKFT 99
            MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNE KVIAVG GGRKADG+LIPPSVKEGDTVLLPEYGGHTVKLG++EYQLFRDEDLLGKFT
Sbjct:    1 MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKFT 98          
The following BLAST results are available for this feature:
BLAST of NO05G01850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852745.12.900e-4594.90chaperonin 10 [Nannochloropsis gaditana CCMP526]; ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01850NO05G01850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01850.1NO05G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01850.1.cds1NO05G01850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01850.1.cds2NO05G01850.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01850.1 ID=NO05G01850.1|Name=NO05G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=905bp
GTGTGCGACCGCGATGCGAGGAGGATTTGCGAGGCAATGCTTCCTTGAGG
GTCGCAACCGATCATCCTTCTTAGCGATTCTAATATTACAACGCCCACCA
CAAGAAGAACAATCGAGAAAGAGAGCGGAGGCAAGTGCGCCGCTTAGGTC
TGATCTCGAGTGAAAGAGAACGTACAGGAGGATGAGATGGTGTAGCCAGC
TACTGAATTGATCTCTCACCATTTTTCACTCCGCTCTGCCCTACAACACA
CAGCCTCTCACCCGAGACTCCCCCTTTAGACGACCTCCCCAGCTCCACTC
AGTCAGCCATGTCTTTGCGTAAGCTTATCCCCCTGGCAGACCGCATTCTT
GTGCAGCGCATCCTGCCGAAGACCCAAACGGCCGGCGGTGTCTTCCTCCC
CGAAACCAAACTCGACAAGCCGAATGAAGCCAAAGTGATCGCCGTGGGTC
CCGGTGGACGGAAGGCAGACGGGTCGCTGATTCCCCCGAGCGTGAAGGAA
GGGGACACGGTGTTGTTGCCCGAGTACGGAGGGCACACGGTTAAGCTGGG
AGAGGATGAGTACCAGTTGTTTAGGGATGAGGATTTGCTGGGGAAGTTTA
CGTAGATCTGAGTAAGGGTAAAAGGGAAAGAGGAAATGAAGGATGATGAT
ATCCGGAGGGATAGCGCAGTGTTTGGGGCCGATTTTAAGGACAAGGTCGA
AGACAATGGGAGCACGGACATAGGGAGCGATGGACGGGGGCATGGAGGGT
CGGGAATCGAGAAGGAGGAGGAGGAGGGGGAAGATGAGGAGGAGGTGAAG
GAGAAGATGATTGACGGAATGTAGTATACCTTCGAACATGATGGCCCATA
TTTCTTCGAAAGAAACAAACTTACCATCGACCCACACCCCGAAACCGAAT
CCAAT
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protein sequence of NO05G01850.1

>NO05G01850.1-protein ID=NO05G01850.1-protein|Name=NO05G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGG
RKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGKFT*
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mRNA from alignment at chr5:509991..511372-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01850.1 ID=NO05G01850.1|Name=NO05G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1382bp|location=Sequence derived from alignment at chr5:509991..511372- (Nannochloropsis oceanica)
GTGTGCGACCGCGATGCGAGGAGGATTTGCGAGGCAATGCTTCCTTGAGG GTCGCAACCGATCATCCTTCTTAGCGATTCTAATATTACAACGCCCACCA CAAGAAGAACAATCGAGAAAGAGAGCGGAGGCAAGTGCGCCGCTTAGGTC TGATCTCGAGTGAAAGAGAACGTACAGGAGGATGAGATGGTGTAGCCAGC TACTGAATTGATCTCTCACCATTTTTCACTCCGCTCTGCCCTACAACACA CAGCCTCTCACCCGAGACTCCCCCTTTAGACGACCTCCCCAGCTCCACTC AGTCAGCCATGGTAGGTACTTTTAGGGGGGGTCAGAGACTGGAATAAATA ACTTGTGAGTGAATAGTTTATAACATGAGCAACGTTCAGGGAAAGAGGAG GGCTGGACACTTGTACGGTTCGAGGAGGGATTGATACAGCGCGAGAATGT TGTGCGTGAGACCTAGGATAGAGGAGGCTGGGGCTGATGCATGACGATGA GTATGCACAGATGGAGAGCCGAGAGACAACTCACTGCAGCTCGACAATGA GCACCAATGTCGCTCTCAGCGCCAGCTTATACGAGTGCTGTGTCTGCGAG GTGCCAGGCTTGTCTTGTCCGCCCCTTGCCTTCGCCCTCCCCAGTACGCG ACTCCATGTCGTATGCCTTTCCCCGGTTTACCTTAGTGCCTTTCAAGCGC TACTATCACTCCCGTGCCTTCATCACTTATGCTCAATCACGTTCTCCATC ATCTCTACCTGCTCCCCTTCCACCATACTCACCCACAGTCTTTGCGTAAG CTTATCCCCCTGGCAGACCGCATTCTTGTGCAGCGCATCCTGCCGAAGAC CCAAACGGCCGGCGGTGTCTTCCTCCCCGAAACCAAACTCGACAAGCCGA ATGAAGCCAAAGTGATCGCCGTGGGTCCCGGTGGACGGAAGGCAGACGGG TCGCTGATTCCCCCGAGCGTGAAGGAAGGGGACACGGTGTTGTTGCCCGA GTACGGAGGGCACACGGTTAAGCTGGGAGAGGATGAGTACCAGTTGTTTA GGGATGAGGATTTGCTGGGGAAGTTTACGTAGATCTGAGTAAGGGTAAAA GGGAAAGAGGAAATGAAGGATGATGATATCCGGAGGGATAGCGCAGTGTT TGGGGCCGATTTTAAGGACAAGGTCGAAGACAATGGGAGCACGGACATAG GGAGCGATGGACGGGGGCATGGAGGGTCGGGAATCGAGAAGGAGGAGGAG GAGGGGGAAGATGAGGAGGAGGTGAAGGAGAAGATGATTGACGGAATGTA GTATACCTTCGAACATGATGGCCCATATTTCTTCGAAAGAAACAAACTTA CCATCGACCCACACCCCGAAACCGAATCCAAT
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Coding sequence (CDS) from alignment at chr5:509991..511372-

>NO05G01850.1 ID=NO05G01850.1|Name=NO05G01850.1|organism=Nannochloropsis oceanica|type=CDS|length=297bp|location=Sequence derived from alignment at chr5:509991..511372- (Nannochloropsis oceanica)
ATGTCTTTGCGTAAGCTTATCCCCCTGGCAGACCGCATTCTTGTGCAGCG
CATCCTGCCGAAGACCCAAACGGCCGGCGGTGTCTTCCTCCCCGAAACCA
AACTCGACAAGCCGAATGAAGCCAAAGTGATCGCCGTGGGTCCCGGTGGA
CGGAAGGCAGACGGGTCGCTGATTCCCCCGAGCGTGAAGGAAGGGGACAC
GGTGTTGTTGCCCGAGTACGGAGGGCACACGGTTAAGCTGGGAGAGGATG
AGTACCAGTTGTTTAGGGATGAGGATTTGCTGGGGAAGTTTACGTAG
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Synonyms
Publications