NO05G01850, NO05G01850 (gene) Nannochloropsis oceanica

Overview
NameNO05G01850
Unique NameNO05G01850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1382
Alignment locationchr5:509991..511372 -

Link to JBrowse

Properties
Property NameValue
Description10 kDa chaperonin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:509991..511372 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0009987cellular process
Vocabulary: INTERPRO
TermDefinition
IPR011032GroES-like
IPR020818Chaperonin_Cpn10
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
Homology
[Close]
BLAST of NO05G01850 vs. NCBI_GenBank
Match: XP_005852745.1 (chaperonin 10 [Nannochloropsis gaditana CCMP526] >EKU23088.1 chaperonin 10 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 190.3 bits (482), Expect = 2.900e-45
Identity = 93/98 (94.90%), Postives = 96/98 (97.96%), Query Frame = 0 
Query:    1 MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGGRKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGKFT 99
            MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNE KVIAVG GGRKADG+LIPPSVKEGDTVLLPEYGGHTVKLG++EYQLFRDEDLLGKFT
Sbjct:    1 MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKFT 98
[Close]
BLAST of NO05G01850 vs. NCBI_GenBank
Match: EWM28310.1 (10 kda chaperonin [Nannochloropsis gaditana])

HSP 1 Score: 190.3 bits (482), Expect = 2.900e-45
Identity = 93/98 (94.90%), Postives = 96/98 (97.96%), Query Frame = 0 
Query:    1 MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGGRKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGKFT 99
            MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNE KVIAVG GGRKADG+LIPPSVKEGDTVLLPEYGGHTVKLG++EYQLFRDEDLLGKFT
Sbjct:   64 MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKFT 161
[Close]
BLAST of NO05G01850 vs. NCBI_GenBank
Match: GBG31382.1 (10 kDa chaperonin [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 129.0 bits (323), Expect = 8.000e-27
Identity = 59/95 (62.11%), Postives = 79/95 (83.16%), Query Frame = 0 
Query:    3 LRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGGRKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGKF 98
            LRKLIPLADR+LV+R +P TQTAGGVFLPE+   K  EA+V+AVGPG R  +G+++P +V+ GD VLLPEYGG  V+ G++E+QLFR++D+LGK+
Sbjct:    4 LRKLIPLADRVLVKRAVPVTQTAGGVFLPESSTKKEPEAEVVAVGPGRRDQNGNIVPMTVEVGDKVLLPEYGGQAVQFGDEEFQLFRNDDILGKY 98
[Close]
BLAST of NO05G01850 vs. NCBI_GenBank
Match: CBN76655.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 125.2 bits (313), Expect = 1.200e-25
Identity = 60/94 (63.83%), Postives = 75/94 (79.79%), Query Frame = 0 
Query:    4 RKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGGRKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGKF 98
            RK  PLADRILV+R++ KTQTAGGV+LP++KL K NE +V+AVGPG     G+ I  +VK G+TVLLPEYGG T+ LG++E  LFRDED+LGKF
Sbjct:    6 RKFAPLADRILVRRLVAKTQTAGGVYLPDSKLGKTNEGEVVAVGPGRVTGSGTKIEVNVKVGETVLLPEYGGTTLTLGDEELSLFRDEDILGKF 99
[Close]
BLAST of NO05G01850 vs. NCBI_GenBank
Match: XP_002162621.1 (PREDICTED: 10 kDa heat shock protein, mitochondrial-like [Hydra vulgaris])

HSP 1 Score: 124.8 bits (312), Expect = 1.500e-25
Identity = 55/95 (57.89%), Postives = 75/95 (78.95%), Query Frame = 0 
Query:    3 LRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGGRKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGKF 98
            LRKL+PL DR++VQR++ +T++ GG+ LPE  + K NEA V++VGPGGR   G ++P SVK GD+VLLPEYGG  ++LG+ EY +FRD +LLGKF
Sbjct:    4 LRKLVPLFDRVIVQRVVAETKSTGGILLPEKSVGKVNEATVVSVGPGGRDQSGKIVPVSVKPGDSVLLPEYGGTKIELGDKEYVIFRDSELLGKF 98
[Close]
BLAST of NO05G01850 vs. NCBI_GenBank
Match: KFY75033.1 (hypothetical protein V499_04955 [Pseudogymnoascus sp. VKM F-103])

HSP 1 Score: 124.4 bits (311), Expect = 2.000e-25
Identity = 57/95 (60.00%), Postives = 75/95 (78.95%), Query Frame = 0 
Query:    2 SLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGGRKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGK 97
            S++ L PL DR+LVQRI  +TQTAGG+FLPE+ + + NEA+V+AVGPGG   +G ++ PSVK GD VL+P+YGG  VK+GE+EY LFRD +LL K
Sbjct:  215 SIKSLAPLLDRVLVQRIKAQTQTAGGIFLPESSVKELNEARVLAVGPGGLDKEGKIVKPSVKAGDKVLIPQYGGSPVKVGEEEYALFRDYELLAK 309
[Close]
BLAST of NO05G01850 vs. NCBI_GenBank
Match: OBT44109.1 (hypothetical protein VE00_04456 [Pseudogymnoascus sp. WSF 3629])

HSP 1 Score: 124.4 bits (311), Expect = 2.000e-25
Identity = 57/95 (60.00%), Postives = 75/95 (78.95%), Query Frame = 0 
Query:    2 SLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGGRKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGK 97
            S++ L PL DR+LVQRI  +TQTAGG+FLPE+ + + NEA+V+AVGPGG   +G ++ PSVK GD VL+P+YGG  VK+GE+EY LFRD +LL K
Sbjct:   91 SIKSLAPLLDRVLVQRIKAQTQTAGGIFLPESSVKELNEARVLAVGPGGLDKEGKIVKPSVKAGDKVLIPQYGGSPVKVGEEEYALFRDYELLAK 185
[Close]
BLAST of NO05G01850 vs. NCBI_GenBank
Match: XP_018134146.1 (hypothetical protein VE01_01606 [Pseudogymnoascus verrucosus] >OBU00414.1 10 kDa heat shock protein [Pseudogymnoascus verrucosus])

HSP 1 Score: 124.4 bits (311), Expect = 2.000e-25
Identity = 57/95 (60.00%), Postives = 75/95 (78.95%), Query Frame = 0 
Query:    2 SLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGGRKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGK 97
            S++ L PL DR+LVQRI  +TQTAGG+FLPE+ + + NEA+V+AVGPGG   +G ++ PSVK GD VL+P+YGG  VK+GE+EY LFRD +LL K
Sbjct:   91 SIKSLAPLLDRVLVQRIKAQTQTAGGIFLPESSVKELNEARVLAVGPGGLDKEGKIVKPSVKAGDKVLIPQYGGSPVKVGEEEYALFRDYELLAK 185
[Close]
BLAST of NO05G01850 vs. NCBI_GenBank
Match: XP_024323066.1 (10 kDa heat shock protein [Pseudogymnoascus destructans] >ELR09599.1 chaperonin GroES [Pseudogymnoascus destructans 20631-21] >KFX99757.1 hypothetical protein O988_03665 [Pseudogymnoascus sp. VKM F-3808] >OAF57780.1 10 kDa heat shock protein [Pseudogymnoascus destructans])

HSP 1 Score: 123.2 bits (308), Expect = 4.400e-25
Identity = 57/95 (60.00%), Postives = 74/95 (77.89%), Query Frame = 0 
Query:    2 SLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGGRKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGK 97
            S++ L PL DR+LVQRI  +TQTAGG+FLPE+ + + NEA+V+AVGPGG   +G  + PSVK GD VL+P+YGG  VK+GE+EY LFRD +LL K
Sbjct:    7 SIKSLAPLLDRVLVQRIKAQTQTAGGIFLPESSVKELNEARVLAVGPGGLDKEGKTVKPSVKAGDKVLIPQYGGSPVKVGEEEYALFRDYELLAK 101
[Close]
BLAST of NO05G01850 vs. NCBI_GenBank
Match: XP_012200381.1 (chaperonin GroS [Saprolegnia parasitica CBS 223.65] >KDO28773.1 chaperonin GroS [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 123.2 bits (308), Expect = 4.400e-25
Identity = 55/96 (57.29%), Postives = 76/96 (79.17%), Query Frame = 0 
Query:    2 SLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGGRKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGKF 98
            SLRKL+PL +R+L+++  P  +TAGG++LP++  +  NE +V+AVGPG R  +G++IP +V  GD VLLPEYGG  +KLGEDE+ LFRDED+LGKF
Sbjct:    3 SLRKLLPLGNRVLIKKAEPVLKTAGGIYLPDSAKNTQNEGEVVAVGPGARNHEGTIIPMNVAVGDKVLLPEYGGSLLKLGEDEFHLFRDEDILGKF 98
The following BLAST results are available for this feature:
BLAST of NO05G01850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005852745.12.900e-4594.90chaperonin 10 [Nannochloropsis gaditana CCMP526] >... [more]
EWM28310.12.900e-4594.9010 kda chaperonin [Nannochloropsis gaditana][more]
GBG31382.18.000e-2762.1110 kDa chaperonin [Aurantiochytrium sp. FCC1311][more]
CBN76655.11.200e-2563.83conserved unknown protein [Ectocarpus siliculosus][more]
XP_002162621.11.500e-2557.89PREDICTED: 10 kDa heat shock protein, mitochondria... [more]
KFY75033.12.000e-2560.00hypothetical protein V499_04955 [Pseudogymnoascus ... [more]
OBT44109.12.000e-2560.00hypothetical protein VE00_04456 [Pseudogymnoascus ... [more]
XP_018134146.12.000e-2560.00hypothetical protein VE01_01606 [Pseudogymnoascus ... [more]
XP_024323066.14.400e-2560.0010 kDa heat shock protein [Pseudogymnoascus destru... [more]
XP_012200381.14.400e-2557.29chaperonin GroS [Saprolegnia parasitica CBS 223.65... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003682NSK003682Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01850.1NO05G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584046gene_2976Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g110gene2362Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01850.1NO05G01850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01850 ID=NO05G01850|Name=NO05G01850|organism=Nannochloropsis oceanica|type=gene|length=1382bp
GTGTGCGACCGCGATGCGAGGAGGATTTGCGAGGCAATGCTTCCTTGAGG
GTCGCAACCGATCATCCTTCTTAGCGATTCTAATATTACAACGCCCACCA
CAAGAAGAACAATCGAGAAAGAGAGCGGAGGCAAGTGCGCCGCTTAGGTC
TGATCTCGAGTGAAAGAGAACGTACAGGAGGATGAGATGGTGTAGCCAGC
TACTGAATTGATCTCTCACCATTTTTCACTCCGCTCTGCCCTACAACACA
CAGCCTCTCACCCGAGACTCCCCCTTTAGACGACCTCCCCAGCTCCACTC
AGTCAGCCATGgtaggtacttttagggggggtcagagactggaataaata
acttgtgagtgaatagtttataacatgagcaacgttcagggaaagaggag
ggctggacacttgtacggttcgaggagggattgatacagcgcgagaatgt
tgtgcgtgagacctaggatagaggaggctggggctgatgcatgacgatga
gtatgcacagatggagagccgagagacaactcactgcagctcgacaatga
gcaccaatgtcgctctcagcgccagcttatacgagtgctgtgtctgcgag
gtgccaggcttgtcttgtccgccccttgccttcgccctccccagtacgcg
actccatgtcgtatgcctttccccggtttaccttagtgcctttcaagcgc
tactatcactcccgtgccttcatcacttatgctcaatcacgttctccatc
atctctacctgctccccttccaccatactcacccacagTCTTTGCGTAAG
CTTATCCCCCTGGCAGACCGCATTCTTGTGCAGCGCATCCTGCCGAAGAC
CCAAACGGCCGGCGGTGTCTTCCTCCCCGAAACCAAACTCGACAAGCCGA
ATGAAGCCAAAGTGATCGCCGTGGGTCCCGGTGGACGGAAGGCAGACGGG
TCGCTGATTCCCCCGAGCGTGAAGGAAGGGGACACGGTGTTGTTGCCCGA
GTACGGAGGGCACACGGTTAAGCTGGGAGAGGATGAGTACCAGTTGTTTA
GGGATGAGGATTTGCTGGGGAAGTTTACGTAGATCTGAGTAAGGGTAAAA
GGGAAAGAGGAAATGAAGGATGATGATATCCGGAGGGATAGCGCAGTGTT
TGGGGCCGATTTTAAGGACAAGGTCGAAGACAATGGGAGCACGGACATAG
GGAGCGATGGACGGGGGCATGGAGGGTCGGGAATCGAGAAGGAGGAGGAG
GAGGGGGAAGATGAGGAGGAGGTGAAGGAGAAGATGATTGACGGAATGTA
GTATACCTTCGAACATGATGGCCCATATTTCTTCGAAAGAAACAAACTTA
CCATCGACCCACACCCCGAAACCGAATCCAAT
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protein sequence of NO05G01850.1

>NO05G01850.1-protein ID=NO05G01850.1-protein|Name=NO05G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MSLRKLIPLADRILVQRILPKTQTAGGVFLPETKLDKPNEAKVIAVGPGG
RKADGSLIPPSVKEGDTVLLPEYGGHTVKLGEDEYQLFRDEDLLGKFT*
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Synonyms
Publications