NO05G01720, NO05G01720 (gene) Nannochloropsis oceanica

Overview
NameNO05G01720
Unique NameNO05G01720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length731
Alignment locationchr5:470212..470942 -

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Properties
Property NameValue
DescriptionDNA-directed RNA polymerase subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:470212..470942 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0006379mRNA cleavage
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0046872metal ion binding
GO:0008270zinc ion binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
GO:0005634nucleus
Homology
[Close]
BLAST of NO05G01720 vs. NCBI_GenBank
Match: GAX94923.1 (Hypothetical protein PINS_002792 [Pythium insidiosum])

HSP 1 Score: 124.8 bits (312), Expect = 2.000e-25
Identity = 60/122 (49.18%), Postives = 78/122 (63.93%), Query Frame = 0 
Query:    9 FCDECHALLDLPDEDPIVCRICKFSTTFDELGQVEIITTSAEKPAPRWYQELAAAAKPDGVCEDGNDEGGDSRHAKVDEPCPKCGHPEMSFYTMQLRSADEGSTVFYECLSKKCGHKYSQNN 131
            FC  C  +LD PD + IVC  C++  T++ L  + ++T S EKP P+W +   +           N+  G +R A V+E CPKCG+PEM +YTMQLRSADEG TVFYEC  KKCGHK+S NN
Sbjct:   14 FCPHCGTILDHPDTNNIVCSSCEYRCTYENLPSLSVVTCSEEKPVPKWLKTEQSV----------NEVKGPAR-ATVEETCPKCGNPEMDYYTMQLRSADEGQTVFYEC--KKCGHKFSVNN 122
[Close]
BLAST of NO05G01720 vs. NCBI_GenBank
Match: CBN76141.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 124.0 bits (310), Expect = 3.400e-25
Identity = 56/123 (45.53%), Postives = 74/123 (60.16%), Query Frame = 0 
Query:    8 PFCDECHALLDLPDEDPIVCRICKFSTTFDELGQVEIITTSAEKPAPRWYQELAAAAKPDGVCEDGNDEGGDSRHAKVDEPCPKCGHPEMSFYTMQLRSADEGSTVFYECLSKKCGHKYSQNN 131
            PFC  C ++LD P+   I+C  C    +++  G+VE++T S  +  P W  ++               E  + + A V+E CPKCGHP+M FYTMQLRSADEG TVFYECLSK C HKY+ NN
Sbjct:    4 PFCPSCGSVLDPPESGDILCDHCHLRISYESFGEVEVVTRSQNRAEPEWLVQI-----------QRKGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVNN 115
[Close]
BLAST of NO05G01720 vs. NCBI_GenBank
Match: XP_009520598.1 (hypothetical protein PHYSODRAFT_487107 [Phytophthora sojae] >EGZ25310.1 hypothetical protein PHYSODRAFT_487107 [Phytophthora sojae])

HSP 1 Score: 124.0 bits (310), Expect = 3.400e-25
Identity = 57/122 (46.72%), Postives = 75/122 (61.48%), Query Frame = 0 
Query:    9 FCDECHALLDLPDEDPIVCRICKFSTTFDELGQVEIITTSAEKPAPRWYQELAAAAKPDGVCEDGNDEGGDSRHAKVDEPCPKCGHPEMSFYTMQLRSADEGSTVFYECLSKKCGHKYSQNN 131
            FC  C  +LD PD + IVC  C++   + +L  + ++T S +KPAP+W       ++  G              A V+EPCPKCG+PEM +YT+QLRSADEG TVFYEC  KKCGHK+S NN
Sbjct:   17 FCPHCGTILDHPDTNSIVCSACEYRCRYQDLPSLTVVTRSEDKPAPKWLDAEKVMSEVTG-----------PARATVEEPCPKCGNPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 125
[Close]
BLAST of NO05G01720 vs. NCBI_GenBank
Match: XP_008875582.1 (hypothetical protein H310_10875 [Aphanomyces invadans] >ETV95831.1 hypothetical protein H310_10875 [Aphanomyces invadans])

HSP 1 Score: 123.2 bits (308), Expect = 5.800e-25
Identity = 61/129 (47.29%), Postives = 79/129 (61.24%), Query Frame = 0 
Query:    2 ASGGAVP-FCDECHALLDLPDEDPIVCRICKFSTTFDELGQVEIITTSAEKPAPRWYQELAAAAKPDGVCEDGNDEGGDSRHAKVDEPCPKCGHPEMSFYTMQLRSADEGSTVFYECLSKKCGHKYSQN 130
            A+  A P FC  C ++LDLP+ + IVC  C F+  + +L  +  IT S ++P P+W +E   + +  G              A V+E CPKCGHPEM FYT+QLRSADEG TVFYEC  KKCGH+YS N
Sbjct:    8 ANAAAGPSFCKHCGSILDLPETNSIVCSSCGFTCRYTDLPSLTTITYSQDRPEPKWVKENVQSQEVTG-----------PSRATVEETCPKCGHPEMEFYTLQLRSADEGQTVFYEC--KKCGHRYSVN 123
[Close]
BLAST of NO05G01720 vs. NCBI_GenBank
Match: OQR90068.1 (hypothetical protein ACHHYP_05838 [Achlya hypogyna])

HSP 1 Score: 122.1 bits (305), Expect = 1.300e-24
Identity = 57/128 (44.53%), Postives = 77/128 (60.16%), Query Frame = 0 
Query:    2 ASGGAVPFCDECHALLDLPDEDPIVCRICKFSTTFDELGQVEIITTSAEKPAPRWYQELAAAAKPDGVCEDGNDEGGDSRHAKVDEPCPKCGHPEMSFYTMQLRSADEGSTVFYECLSKKCGHKYSQN 130
            A+ G   FC  C  +LDLP+ + IVC  C ++  + +L  +  +T S ++P P+W +    + +  G              A V+EPCPKCG+P+M FYTMQLRSADEG TVFYEC  KKCGH+YS N
Sbjct:    9 ATAGGPSFCPHCGTILDLPETNNIVCSSCGYTCQYQDLPSLCTVTFSEDRPEPKWVKNAIVSQEVTG-----------PARATVEEPCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123
[Close]
BLAST of NO05G01720 vs. NCBI_GenBank
Match: XP_008609236.1 (DNA-directed RNA polymerase I subunit RPA12 [Saprolegnia diclina VS20] >XP_012197455.1 hypothetical protein SPRG_03477 [Saprolegnia parasitica CBS 223.65] >EQC37074.1 DNA-directed RNA polymerase I subunit RPA12 [Saprolegnia diclina VS20] >KDO31548.1 hypothetical protein SPRG_03477 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 119.4 bits (298), Expect = 8.400e-24
Identity = 56/128 (43.75%), Postives = 76/128 (59.38%), Query Frame = 0 
Query:    2 ASGGAVPFCDECHALLDLPDEDPIVCRICKFSTTFDELGQVEIITTSAEKPAPRWYQELAAAAKPDGVCEDGNDEGGDSRHAKVDEPCPKCGHPEMSFYTMQLRSADEGSTVFYECLSKKCGHKYSQN 130
            A+ G   FC  C  +LDLP+ + IVC  C ++  + +L  +  +T S ++P P+W +    + +  G              A V+EPCPKC +P+M FYTMQLRSADEG TVFYEC  KKCGH+YS N
Sbjct:    9 ATAGGPSFCPHCGTILDLPETNNIVCSSCGYTCQYQDLPTLCTVTFSEDRPEPKWVKNAIVSQEVTG-----------PARATVEEPCPKCNNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123
[Close]
BLAST of NO05G01720 vs. NCBI_GenBank
Match: XP_002904701.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >XP_008905582.1 hypothetical protein PPTG_11085 [Phytophthora parasitica INRA-310] >EEY53083.1 conserved hypothetical protein [Phytophthora infestans T30-4] >ETI46933.1 hypothetical protein F443_08740 [Phytophthora parasitica P1569] >ETK86878.1 hypothetical protein L915_08568 [Phytophthora parasitica] >ETL40291.1 hypothetical protein L916_08498 [Phytophthora parasitica] >ETL93439.1 hypothetical protein L917_08397 [Phytophthora parasitica] >ETM46694.1 hypothetical protein L914_08455 [Phytophthora parasitica] >ETN09021.1 hypothetical protein PPTG_11085 [Phytophthora parasitica INRA-310] >ETO75665.1 hypothetical protein F444_08795 [Phytophthora parasitica P1976] >ETP16733.1 hypothetical protein F441_08717 [Phytophthora parasitica CJ01A1] >ETP44796.1 hypothetical protein F442_08674 [Phytophthora parasitica P10297] >KUG01541.1 DNA-directed RNA polymerase I subunit RPA12 [Phytophthora nicotianae] >POM73758.1 DNA-directed RNA polymerase I [Phytophthora palmivora var. palmivora])

HSP 1 Score: 119.4 bits (298), Expect = 8.400e-24
Identity = 55/122 (45.08%), Postives = 73/122 (59.84%), Query Frame = 0 
Query:    9 FCDECHALLDLPDEDPIVCRICKFSTTFDELGQVEIITTSAEKPAPRWYQELAAAAKPDGVCEDGNDEGGDSRHAKVDEPCPKCGHPEMSFYTMQLRSADEGSTVFYECLSKKCGHKYSQNN 131
            FC  C  +LD PD + IVC  C++   + +L  + ++T S +KP P+W       ++  G              A V+E CPKCG+PEM +YT+QLRSADEG TVFYEC  KKCGHK+S NN
Sbjct:   17 FCPHCGTILDHPDTNSIVCSACEYRCRYQDLPSLTVVTRSEDKPTPKWLDAEKVMSEVTG-----------PARATVEETCPKCGNPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 125
[Close]
BLAST of NO05G01720 vs. NCBI_GenBank
Match: XP_009835507.1 (transcription factor S [Aphanomyces astaci] >ETV75003.1 transcription factor S [Aphanomyces astaci])

HSP 1 Score: 117.9 bits (294), Expect = 2.400e-23
Identity = 56/121 (46.28%), Postives = 74/121 (61.16%), Query Frame = 0 
Query:    9 FCDECHALLDLPDEDPIVCRICKFSTTFDELGQVEIITTSAEKPAPRWYQELAAAAKPDGVCEDGNDEGGDSRHAKVDEPCPKCGHPEMSFYTMQLRSADEGSTVFYECLSKKCGHKYSQN 130
            FC  C ++LDLP+ + IVC  C F+  + +L  +  +T S ++  P+W +E   + +  G              A V+E CPKCGHPEM FYT+QLRSADEG TVFYEC  KKCGH+YS N
Sbjct:   16 FCPHCGSILDLPETNSIVCSSCGFTCRYTDLPSLTTVTYSQDRREPKWVKEDIQSQEVTG-----------PSRATVEETCPKCGHPEMEFYTLQLRSADEGQTVFYEC--KKCGHRYSVN 123
[Close]
BLAST of NO05G01720 vs. NCBI_GenBank
Match: OQS06232.1 (hypothetical protein THRCLA_20417 [Thraustotheca clavata])

HSP 1 Score: 117.9 bits (294), Expect = 2.400e-23
Identity = 55/121 (45.45%), Postives = 74/121 (61.16%), Query Frame = 0 
Query:    9 FCDECHALLDLPDEDPIVCRICKFSTTFDELGQVEIITTSAEKPAPRWYQELAAAAKPDGVCEDGNDEGGDSRHAKVDEPCPKCGHPEMSFYTMQLRSADEGSTVFYECLSKKCGHKYSQN 130
            FC  C  +LDLP+ + IVC  C ++  + +L  +  +T S ++P P+W +    + +  G              A V+EPCPKCG+P+M FYTMQLRSADEG TVFYEC  KKCGH+YS N
Sbjct:   16 FCPHCGTILDLPETNSIVCSSCGYTCRYQDLPTLCTVTYSEDRPEPKWVRNQIVSHEVTG-----------PARATVEEPCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123
[Close]
BLAST of NO05G01720 vs. NCBI_GenBank
Match: OWZ04866.1 (Transcription factor S [Phytophthora megakarya])

HSP 1 Score: 117.1 bits (292), Expect = 4.100e-23
Identity = 54/122 (44.26%), Postives = 72/122 (59.02%), Query Frame = 0 
Query:    9 FCDECHALLDLPDEDPIVCRICKFSTTFDELGQVEIITTSAEKPAPRWYQELAAAAKPDGVCEDGNDEGGDSRHAKVDEPCPKCGHPEMSFYTMQLRSADEGSTVFYECLSKKCGHKYSQNN 131
            FC  C  +LD PD + IVC  C++   + +L  + ++T S +KP P+W       ++  G              A V+E CPKC +PEM +YT+QLRSADEG TVFYEC  KKCGHK+S NN
Sbjct:   17 FCPHCGTILDHPDTNSIVCSACEYRCRYQDLPSLTVVTRSEDKPTPKWLDAEKVMSEVTG-----------PARATVEETCPKCNNPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 125
The following BLAST results are available for this feature:
BLAST of NO05G01720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
GAX94923.12.000e-2549.18Hypothetical protein PINS_002792 [Pythium insidios... [more]
CBN76141.13.400e-2545.53conserved unknown protein [Ectocarpus siliculosus][more]
XP_009520598.13.400e-2546.72hypothetical protein PHYSODRAFT_487107 [Phytophtho... [more]
XP_008875582.15.800e-2547.29hypothetical protein H310_10875 [Aphanomyces invad... [more]
OQR90068.11.300e-2444.53hypothetical protein ACHHYP_05838 [Achlya hypogyna... [more]
XP_008609236.18.400e-2443.75DNA-directed RNA polymerase I subunit RPA12 [Sapro... [more]
XP_002904701.18.400e-2445.08conserved hypothetical protein [Phytophthora infes... [more]
XP_009835507.12.400e-2346.28transcription factor S [Aphanomyces astaci] >ETV75... [more]
OQS06232.12.400e-2345.45hypothetical protein THRCLA_20417 [Thraustotheca c... [more]
OWZ04866.14.100e-2344.26Transcription factor S [Phytophthora megakarya][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01720.1NO05G01720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622927gene_2960Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01720.1NO05G01720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01720 ID=NO05G01720|Name=NO05G01720|organism=Nannochloropsis oceanica|type=gene|length=731bp
CAGTTGGAATCTCCGACGATCCATCCCTCCACGCCTATGGCCTCAGGCGG
AGCCGTGCCTTTTTGCGATGAATGCCATGCACTACTGGATCTGCCGGATG
AGGACCCAATTGTCTGCCGCATCTGTAAATTTTCCACGACCTTTGACGgt
acgtttcccgcctcaaaactccgtcaactccatacccgttgcttcccacc
ccgccacatcgaagccaaacagctcactacatacatctattcatcttctt
tcaaacaaagAGTTGGGTCAAGTAGAAATAATCACCACCAGTGCCGAGAA
ACCTGCGCCGCGCTGGTACCAGGAGCTGGCAGCGGCTGCCAAACCAGATG
GGGTATGCGAGGATGGAAACGACGAGGGAGGGGACAGCCGGCATGCCAAG
GTAGACGAGCCTTGCCCGAAGTGTGGCCATCCAGAGATGAGCTTTTACAC
CATGCAGCTGCGTTCGGCGGATGAGGGGTCGACGGTGTTTTATGAGTGTC
TAAGCAAGAAGTGTGGACACAAGTATTCACAAAATAACTAATTGTGAGTA
TAGTTGCGGGCCGGGCGGGTGAGAGAGTTTGGTTTGAGGGGTTTTGTAGA
GTCAGAGAAACTCCGTAAGAGTGGAAATTGTAATTTGATGGAACGTTTTC
CTTCACTCAAGGTTAGTGGGAAAGCCCAACAAAGTAAAAAGCGAGCGCAA
TGAATGAAGATAGAGCTAAGCGTACATGGAG
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protein sequence of NO05G01720.1

>NO05G01720.1-protein ID=NO05G01720.1-protein|Name=NO05G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MASGGAVPFCDECHALLDLPDEDPIVCRICKFSTTFDELGQVEIITTSAE
KPAPRWYQELAAAAKPDGVCEDGNDEGGDSRHAKVDEPCPKCGHPEMSFY
TMQLRSADEGSTVFYECLSKKCGHKYSQNN*
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Synonyms
Publications