NO05G01720.1, NO05G01720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01720.1
Unique NameNO05G01720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length619
Alignment locationchr5:470212..470942 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:470212..470942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO05G01720.1 vs.
Match: GAX94923.1 (Hypothetical protein PINS_002792 [Pythium insidiosum])

HSP 1 Score: 124.8 bits (312), Expect = 2.000e-25
Identity = 60/122 (49.18%), Postives = 78/122 (63.93%), Query Frame = 0 
Query:    9 FCDECHALLDLPDEDPIVCRICKFSTTFDELGQVEIITTSAEKPAPRWYQELAAAAKPDGVCEDGNDEGGDSRHAKVDEPCPKCGHPEMSFYTMQLRSADEGSTVFYECLSKKCGHKYSQNN 131
            FC  C  +LD PD + IVC  C++  T++ L  + ++T S EKP P+W +   +           N+  G +R A V+E CPKCG+PEM +YTMQLRSADEG TVFYEC  KKCGHK+S NN
Sbjct:   14 FCPHCGTILDHPDTNNIVCSSCEYRCTYENLPSLSVVTCSEEKPVPKWLKTEQSV----------NEVKGPAR-ATVEETCPKCGNPEMDYYTMQLRSADEGQTVFYEC--KKCGHKFSVNN 122
The following BLAST results are available for this feature:
BLAST of NO05G01720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
GAX94923.12.000e-2549.18Hypothetical protein PINS_002792 [Pythium insidios... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01720NO05G01720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01720.1NO05G01720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01720.1.cds1NO05G01720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01720.1.cds2NO05G01720.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01720.1 ID=NO05G01720.1|Name=NO05G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=619bp
CAGTTGGAATCTCCGACGATCCATCCCTCCACGCCTATGGCCTCAGGCGG
AGCCGTGCCTTTTTGCGATGAATGCCATGCACTACTGGATCTGCCGGATG
AGGACCCAATTGTCTGCCGCATCTGTAAATTTTCCACGACCTTTGACGAG
TTGGGTCAAGTAGAAATAATCACCACCAGTGCCGAGAAACCTGCGCCGCG
CTGGTACCAGGAGCTGGCAGCGGCTGCCAAACCAGATGGGGTATGCGAGG
ATGGAAACGACGAGGGAGGGGACAGCCGGCATGCCAAGGTAGACGAGCCT
TGCCCGAAGTGTGGCCATCCAGAGATGAGCTTTTACACCATGCAGCTGCG
TTCGGCGGATGAGGGGTCGACGGTGTTTTATGAGTGTCTAAGCAAGAAGT
GTGGACACAAGTATTCACAAAATAACTAATTGTGAGTATAGTTGCGGGCC
GGGCGGGTGAGAGAGTTTGGTTTGAGGGGTTTTGTAGAGTCAGAGAAACT
CCGTAAGAGTGGAAATTGTAATTTGATGGAACGTTTTCCTTCACTCAAGG
TTAGTGGGAAAGCCCAACAAAGTAAAAAGCGAGCGCAATGAATGAAGATA
GAGCTAAGCGTACATGGAG
back to top

protein sequence of NO05G01720.1

>NO05G01720.1-protein ID=NO05G01720.1-protein|Name=NO05G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MASGGAVPFCDECHALLDLPDEDPIVCRICKFSTTFDELGQVEIITTSAE
KPAPRWYQELAAAAKPDGVCEDGNDEGGDSRHAKVDEPCPKCGHPEMSFY
TMQLRSADEGSTVFYECLSKKCGHKYSQNN*
back to top

mRNA from alignment at chr5:470212..470942-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01720.1 ID=NO05G01720.1|Name=NO05G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=731bp|location=Sequence derived from alignment at chr5:470212..470942- (Nannochloropsis oceanica)
CAGTTGGAATCTCCGACGATCCATCCCTCCACGCCTATGGCCTCAGGCGG
AGCCGTGCCTTTTTGCGATGAATGCCATGCACTACTGGATCTGCCGGATG
AGGACCCAATTGTCTGCCGCATCTGTAAATTTTCCACGACCTTTGACGGT
ACGTTTCCCGCCTCAAAACTCCGTCAACTCCATACCCGTTGCTTCCCACC
CCGCCACATCGAAGCCAAACAGCTCACTACATACATCTATTCATCTTCTT
TCAAACAAAGAGTTGGGTCAAGTAGAAATAATCACCACCAGTGCCGAGAA
ACCTGCGCCGCGCTGGTACCAGGAGCTGGCAGCGGCTGCCAAACCAGATG
GGGTATGCGAGGATGGAAACGACGAGGGAGGGGACAGCCGGCATGCCAAG
GTAGACGAGCCTTGCCCGAAGTGTGGCCATCCAGAGATGAGCTTTTACAC
CATGCAGCTGCGTTCGGCGGATGAGGGGTCGACGGTGTTTTATGAGTGTC
TAAGCAAGAAGTGTGGACACAAGTATTCACAAAATAACTAATTGTGAGTA
TAGTTGCGGGCCGGGCGGGTGAGAGAGTTTGGTTTGAGGGGTTTTGTAGA
GTCAGAGAAACTCCGTAAGAGTGGAAATTGTAATTTGATGGAACGTTTTC
CTTCACTCAAGGTTAGTGGGAAAGCCCAACAAAGTAAAAAGCGAGCGCAA
TGAATGAAGATAGAGCTAAGCGTACATGGAG
back to top

Coding sequence (CDS) from alignment at chr5:470212..470942-

>NO05G01720.1 ID=NO05G01720.1|Name=NO05G01720.1|organism=Nannochloropsis oceanica|type=CDS|length=393bp|location=Sequence derived from alignment at chr5:470212..470942- (Nannochloropsis oceanica)
ATGGCCTCAGGCGGAGCCGTGCCTTTTTGCGATGAATGCCATGCACTACT
GGATCTGCCGGATGAGGACCCAATTGTCTGCCGCATCTGTAAATTTTCCA
CGACCTTTGACGAGTTGGGTCAAGTAGAAATAATCACCACCAGTGCCGAG
AAACCTGCGCCGCGCTGGTACCAGGAGCTGGCAGCGGCTGCCAAACCAGA
TGGGGTATGCGAGGATGGAAACGACGAGGGAGGGGACAGCCGGCATGCCA
AGGTAGACGAGCCTTGCCCGAAGTGTGGCCATCCAGAGATGAGCTTTTAC
ACCATGCAGCTGCGTTCGGCGGATGAGGGGTCGACGGTGTTTTATGAGTG
TCTAAGCAAGAAGTGTGGACACAAGTATTCACAAAATAACTAA
back to top
Synonyms
Publications