NO05G01650, NO05G01650 (gene) Nannochloropsis oceanica

Overview
NameNO05G01650
Unique NameNO05G01650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1209
Alignment locationchr5:454598..455806 +

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Properties
Property NameValue
Description3-5 exonuclease domain-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:454598..455806 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00084083'-5' exonuclease activity
GO:0003676nucleic acid binding
GO:0004518nuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR0025623'-5'_exonuclease_dom
Homology
BLAST of NO05G01650 vs. NCBI_GenBank
Match: ADP86164.1 (3'-5' exonuclease [Desulfovibrio vulgaris RCH1])

HSP 1 Score: 96.3 bits (238), Expect = 2.300e-16
Identity = 59/152 (38.82%), Postives = 86/152 (56.58%), Query Frame = 0
Query:  141 VLKGGGVLGMDAEWQPEIARFERNPVALLQLAWEEDVFLVRLQHLQ-GEVPASLHKLMSDVSIVKVGCNIGGDAKRLLQDYALDTRGHVDLKEVTSGLGLVRCKRRSMAWLAKEFLSIEMDKSQQCSDWGNVELSPEQIKYSSIDAWVAGAI 292
            VL+   VLG D E +P   + + N  +L+QLA  + V+L++L  +  GE+   L  L+SD +I+K G  +  D + L + YA    G VDL EV   LGL   +   +  LA  FL I + K  QCS+W N EL P+Q+ Y++ DAWV+  I
Sbjct:   44 VLRSDSVLGFDTETRPTFRKGKVNLPSLVQLACADVVYLIQLNWVPLGEM---LADLLSDPAIIKTGVAVRDDIRDLQKLYAFRDGGVVDLGEVARDLGL---ETHGLRNLAANFLGIRISKGAQCSNWSNRELGPQQVVYAATDAWVSREI 189          
BLAST of NO05G01650 vs. NCBI_GenBank
Match: WP_010938381.1 (3'-5' exonuclease domain-containing protein 2 [Desulfovibrio vulgaris] >YP_010303.1 3' exoribonuclease [Desulfovibrio vulgaris str. Hildenborough] >AAS95562.1 3'- 5' exonuclease domain protein [Desulfovibrio vulgaris str. Hildenborough] >ABM28928.1 3'-5' exonuclease [Desulfovibrio vulgaris DP4])

HSP 1 Score: 96.3 bits (238), Expect = 2.300e-16
Identity = 59/152 (38.82%), Postives = 86/152 (56.58%), Query Frame = 0
Query:  141 VLKGGGVLGMDAEWQPEIARFERNPVALLQLAWEEDVFLVRLQHLQ-GEVPASLHKLMSDVSIVKVGCNIGGDAKRLLQDYALDTRGHVDLKEVTSGLGLVRCKRRSMAWLAKEFLSIEMDKSQQCSDWGNVELSPEQIKYSSIDAWVAGAI 292
            VL+   VLG D E +P   + + N  +L+QLA  + V+L++L  +  GE+   L  L+SD +I+K G  +  D + L + YA    G VDL EV   LGL   +   +  LA  FL I + K  QCS+W N EL P+Q+ Y++ DAWV+  I
Sbjct:   45 VLRSDSVLGFDTETRPTFRKGKVNLPSLVQLACADVVYLIQLNWVPLGEM---LADLLSDPAIIKTGVAVRDDIRDLQKLYAFRDGGVVDLGEVARDLGL---ETHGLRNLAANFLGIRISKGAQCSNWSNRELGPQQVVYAATDAWVSREI 190          
BLAST of NO05G01650 vs. NCBI_GenBank
Match: XP_015750050.1 (PREDICTED: exonuclease 3'-5' domain-containing protein 2-like isoform X1 [Acropora digitifera])

HSP 1 Score: 95.9 bits (237), Expect = 3.000e-16
Identity = 62/173 (35.84%), Postives = 94/173 (54.34%), Query Frame = 0
Query:  148 LGMDAEWQPEIARFERNPVALLQLAWEE-DVFLVRLQHLQGEVPASLHKLMSDVSIVKVGCNIGGDAKRLLQDYALDTRGHVDLKEVTSGLGLVR----CKRRSMAWLAKEFLSIEMDKSQ--QCSDWGNVELSPEQIKYSSIDAWVAGAIAGNLFRTYKGQVGQPTCVSSFC 314
            +G+D EW  +  +    PVALLQ+A    D FLVRL  +  ++P  + +++ D +++K G  I  DAKRLL+ +A+  RG VDL+ V            C++ S+  LAK  L ++++KS   QCS+W   +LS +QI+Y+  DA VA  I     R  K +  Q      FC
Sbjct:  122 IGIDCEWVNKEGQVNA-PVALLQIATPLCDCFLVRLCKMDSQMPQIVKEILEDKTVLKFGVGIQNDAKRLLEMFAIHVRGCVDLRHVAQRTQSQNRDESCQKMSLDALAKRILGVKLNKSWKIQCSNWEEEKLSAQQIEYAMNDALVASHI---FLRLVKEKAKQSLDSEDFC 290          
BLAST of NO05G01650 vs. NCBI_GenBank
Match: XP_015750051.1 (PREDICTED: exonuclease 3'-5' domain-containing protein 2-like isoform X2 [Acropora digitifera])

HSP 1 Score: 95.9 bits (237), Expect = 3.000e-16
Identity = 62/173 (35.84%), Postives = 94/173 (54.34%), Query Frame = 0
Query:  148 LGMDAEWQPEIARFERNPVALLQLAWEE-DVFLVRLQHLQGEVPASLHKLMSDVSIVKVGCNIGGDAKRLLQDYALDTRGHVDLKEVTSGLGLVR----CKRRSMAWLAKEFLSIEMDKSQ--QCSDWGNVELSPEQIKYSSIDAWVAGAIAGNLFRTYKGQVGQPTCVSSFC 314
            +G+D EW  +  +    PVALLQ+A    D FLVRL  +  ++P  + +++ D +++K G  I  DAKRLL+ +A+  RG VDL+ V            C++ S+  LAK  L ++++KS   QCS+W   +LS +QI+Y+  DA VA  I     R  K +  Q      FC
Sbjct:  103 IGIDCEWVNKEGQVNA-PVALLQIATPLCDCFLVRLCKMDSQMPQIVKEILEDKTVLKFGVGIQNDAKRLLEMFAIHVRGCVDLRHVAQRTQSQNRDESCQKMSLDALAKRILGVKLNKSWKIQCSNWEEEKLSAQQIEYAMNDALVASHI---FLRLVKEKAKQSLDSEDFC 271          
BLAST of NO05G01650 vs. NCBI_GenBank
Match: PIE57530.1 (3'-5' exonuclease [Desulfobulbus propionicus])

HSP 1 Score: 95.5 bits (236), Expect = 4.000e-16
Identity = 56/188 (29.79%), Postives = 101/188 (53.72%), Query Frame = 0
Query:  120 VHVMPLESNKLEMLLAQVYARVLKGGGVLGMDAEWQPEIARFERNPVALLQLAWEEDVFLVRLQHLQGEVPASLHKLMSDVSIVKVGCNIGGDAKRLLQDYALDTRGHVDLKEVTSGLGLVRCKRRSMAWLAKEFLSIEMDKSQQCSDWGNVELSPEQIKYSSIDAWVAGAIAGNLFRTYKGQVGQPT 308
            +H++   SN+ ++   Q   + L+   +LG D E +P   + +  P ALLQLA  + VFL +L  L   +P +L  ++S+   +KVG  +G D  +L Q +    +G +DL +++  LG+   +   +  LA   L I + KS + ++W   +LS +QI+Y++ DAW++ A+   L   + G +   T
Sbjct:   38 IHIV---SNQTQL---QAAVKTLRTTNLLGFDTETRPTFRKGQSYPPALLQLADGQSVFLFKLYQL--GIPKALTDILSNQQTIKVGVAVGFDTVQLQQIHPFLPQGFIDLADISRHLGM---QHHGLRGLAAVTLGIRISKSVRTTNWAAPDLSAKQIRYAATDAWISRAVYSRLMEIHHGDIADDT 214          
BLAST of NO05G01650 vs. NCBI_GenBank
Match: XP_009056337.1 (hypothetical protein LOTGIDRAFT_119943, partial [Lottia gigantea] >ESO93138.1 hypothetical protein LOTGIDRAFT_119943, partial [Lottia gigantea])

HSP 1 Score: 95.1 bits (235), Expect = 5.200e-16
Identity = 56/156 (35.90%), Postives = 88/156 (56.41%), Query Frame = 0
Query:  147 VLGMDAEWQPEIARFERNPVALLQLAWEEDV-FLVRLQHLQGEVPASLHKLMSDVSIVKVGCNIGGDAKRLLQDYALDTRGHVDLKEVTSGL-GLVRCKRRSMAWLAKEFL--SIEMDKSQQCSDWGNVELSPEQIKYSSIDAWVAGAIAGNLFRT 299
            VLG+D EW  +       PVALLQLA  + +  L+RL  ++  +P SL K++SD SI+K G  +  D  +L +DY +   G VDL+ +   + G+ +CK + +  L++  L  SI  D + +C +W    LS +Q+KY+++DA V   I   L  T
Sbjct:    1 VLGLDCEWVMDRENNITYPVALLQLATYQGLCILIRLNLMENNIPKSLLKILSDRSILKCGVAVNDDGNKLYKDYGITVSGCVDLRHILPRVRGMYQCKSKGLKGLSEAILGFSIYKDSTIRCGNWEADVLSEKQVKYAALDALVGIDIYTKLVMT 156          
BLAST of NO05G01650 vs. NCBI_GenBank
Match: XP_015770404.1 (PREDICTED: exonuclease 3'-5' domain-containing protein 2-like [Acropora digitifera])

HSP 1 Score: 95.1 bits (235), Expect = 5.200e-16
Identity = 57/148 (38.51%), Postives = 87/148 (58.78%), Query Frame = 0
Query:  148 LGMDAEWQPEIARFERNPVALLQLAWEE-DVFLVRLQHLQGEVPASLHKLMSDVSIVKVGCNIGGDAKRLLQDYALDTRGHVDLKEVTSGLGLVR----CKRRSMAWLAKEFLSIEMDKSQ--QCSDWGNVELSPEQIKYSSIDAWVA 289
            +G+D EW     + +  PVALLQ+A    D FLVRL  + G++P  + +++ D +++K G  I  DAKRLL+ + +  RG VDL+ V     L      C + S+  LAK  L ++++KS   QCS+W   +LS +QI+Y+  DA VA
Sbjct:  113 IGIDCEWVNNEGQ-QNMPVALLQIATPLCDCFLVRLCKMDGQMPQIVKEILEDKTVLKFGVGIQNDAKRLLEMFGIHVRGCVDLRHVAQRTQLKNGDQSCPKMSLDALAKRILGVKLNKSWRIQCSNWEEEKLSTQQIEYAMNDALVA 259          
BLAST of NO05G01650 vs. NCBI_GenBank
Match: PRD33626.1 (Exonuclease 3'-5' domain-containing protein 2 [Nephila clavipes])

HSP 1 Score: 95.1 bits (235), Expect = 5.200e-16
Identity = 56/149 (37.58%), Postives = 86/149 (57.72%), Query Frame = 0
Query:  147 VLGMDAEWQPEIARFERNPVALLQLAWEED-VFLVRLQHLQ-GEVPASLHKLMSDVSIVKVGCNIGGDAKRLLQDYALDTRGHVDLKEVTSGLGLVRCKRRSMAWLAKEFLSIEMDKSQQ--CSDWGNVELSPEQIKYSSIDAWVAGAI 292
            +LG+D EW       +R PV+LLQLA +     LVRL +     +P  L  ++S+ +++KVG  +  DA +L  DY L+ RG +DL+ +   L  ++ K  S+  L  E L I ++KS++  CSDW    LS EQ+KY++ DA +A  I
Sbjct:   63 ILGIDCEW--VTVENKRKPVSLLQLATDSGFCVLVRLSYFPVWLIPPVLIDILSNETLLKVGVGVAEDANKLFNDYGLEVRGFIDLRYLAKDLKELQGKNMSLKSLGVELLGINLNKSKELRCSDWNAPHLSEEQVKYAANDAIIAAKI 209          
BLAST of NO05G01650 vs. NCBI_GenBank
Match: KDR07728.1 (Exonuclease 3'-5' domain-containing protein 2 [Zootermopsis nevadensis])

HSP 1 Score: 94.7 bits (234), Expect = 6.800e-16
Identity = 59/159 (37.11%), Postives = 91/159 (57.23%), Query Frame = 0
Query:  133 LLAQVYARVLKGGGVLGMDAEWQPEIARFERNPVALLQLAWEED-VFLVRLQHLQGEVPASLHKLMSDVSIVKVGCNIGGDAKRLLQDYALDTRGHVDLKEVTSGLGLVRCKRRSMAWLAKEFLSIEMDKSQ--QCSDWGNVELSPEQIKYSSIDAWVA 289
            ++A+   R      VLG D EW  +  +  R PVAL+QLA  +    LVRL HL+ ++P  L +++ D ++ KVG     DA  L++DY +  RG +DL+ + +  G V   R  +A +A+  L I++DK+   +CSDW    L P Q++Y+S DA VA
Sbjct:   85 IVARTLQRKCANFRVLGFDCEWVTDFGK--RRPVALMQLATGDGFCALVRLCHLK-QLPHCLQEILEDATVFKVGVVPSDDASYLMKDYGITVRGCLDLRHLMAQSGTV--SRGGLAGMAQNLLGIKLDKNWRIRCSDWEAPVLEPHQVRYASQDALVA 238          
BLAST of NO05G01650 vs. NCBI_GenBank
Match: WP_035065558.1 (3'-5' exonuclease domain-containing protein 2 [Desulfovibrio termitidis])

HSP 1 Score: 94.7 bits (234), Expect = 6.800e-16
Identity = 58/151 (38.41%), Postives = 85/151 (56.29%), Query Frame = 0
Query:  142 LKGGGVLGMDAEWQPEIARFERNPVALLQLAWEEDVFLVRLQHLQ-GEVPASLHKLMSDVSIVKVGCNIGGDAKRLLQDYALDTRGHVDLKEVTSGLGLVRCKRRSMAWLAKEFLSIEMDKSQQCSDWGNVELSPEQIKYSSIDAWVAGAI 292
            L+   VLG D E +P   + + N  +L+QLA  + V+L +L  L  GE  AS   ++SD  IVK G  +  D + L + +A +  G VDL EV   LGL   +   +  LA  FL + + K  QCS+W N EL+P+Q+ Y++ DAWV+  I
Sbjct:   45 LRDEDVLGFDTETRPTFRKGKVNLPSLVQLACSDVVYLFQLNWLPFGEALAS---VLSDADIVKTGVAVRDDIRDLQKLFAFNDAGVVDLGEVARDLGL---ETHGLRNLAANFLEVRISKGAQCSNWSNRELAPQQVLYAATDAWVSREI 189          
The following BLAST results are available for this feature:
BLAST of NO05G01650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
ADP86164.12.300e-1638.823'-5' exonuclease [Desulfovibrio vulgaris RCH1][more]
WP_010938381.12.300e-1638.823'-5' exonuclease domain-containing protein 2 [Des... [more]
XP_015750050.13.000e-1635.84PREDICTED: exonuclease 3'-5' domain-containing pro... [more]
XP_015750051.13.000e-1635.84PREDICTED: exonuclease 3'-5' domain-containing pro... [more]
PIE57530.14.000e-1629.793'-5' exonuclease [Desulfobulbus propionicus][more]
XP_009056337.15.200e-1635.90hypothetical protein LOTGIDRAFT_119943, partial [L... [more]
XP_015770404.15.200e-1638.51PREDICTED: exonuclease 3'-5' domain-containing pro... [more]
PRD33626.15.200e-1637.58Exonuclease 3'-5' domain-containing protein 2 [Nep... [more]
KDR07728.16.800e-1637.11Exonuclease 3'-5' domain-containing protein 2 [Zoo... [more]
WP_035065558.16.800e-1638.413'-5' exonuclease domain-containing protein 2 [Des... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003704NSK003704Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01650.1NO05G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583950gene_2953Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g89gene2346Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01650.1NO05G01650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01650 ID=NO05G01650|Name=NO05G01650|organism=Nannochloropsis oceanica|type=gene|length=1209bp
ATGAAGATGTTGCCTCTGATTGGTTGGGTCCTGACGCTTAGCCGGCAGCA
AACTGCCTCGGCCGCCGCCATGTCGTCACTCAATGCCTTTGTTTTGGCGC
CGCGGCTGGCAGGATGCATGCGACCCGTCGTCGCGAAATCTGCCGCGAGC
GGGGCAAGGAGGACTGCCGCCACTCACGTCACTGTGACCTCCACCGACAC
AAACCCTCCTCTCACTTCCAGTGCCAGCCCTTCAATCACAAGAGAGGTAT
CCACCACCACTATTACGGCTAGGCCAACTGCCACACCGTTGTTGGACATG
CACGATGTGACCGTCCAGTCGAACCCCAGCAAAGGCCCTATGATGCAGCG
CCTCCGTGTCCACGTCATGCCCCTGGAGTCGAATAAGCTCGAGATGCTGC
TCGCACAGGTCTATGCCCGCGTCCTTAAGGGAGGCGGCGTGTTAGGGATG
GATGCCGAGTGGCAGCCGGAGATTGCACGCTTTGAAAGAAATCCTGTGGC
GTTGCTACAGCTTGCGTGGGAGGAAGATGTCTTTTTGGTGCGTCTCCAGC
ATTTACAAGGAGAGGTGCCCGCCTCCTTGCACAAATTAATGTCCGATGTA
AGTATTGTTAAGGTAGGATGTAATATTGGGGGGGATGCGAAGCGGCTACT
TCAAGACTATGCGCTCGATACCCGCGGACACGTGGACCTTAAGGAAGTCA
CTTCCGGGTTGGGTCTTGTGCGATGCAAACGACGGAGCATGGCCTGGCTT
GCCAAGGAGTTTTTGAGCATCGAAATGGACAAGTCGCAACAGTGTTCGGA
CTGGGGTAATGTAGAACTGTCTCCAGAACAGATAAAATATTCGAGTATCG
ATGCCTGGGTTGCCGGAGCAATAGCGGGGAATCTTTTTAGGACGTATAAA
GGTCAGGTAGGACAGCCCACATGCGTATCCTCTTTTTGCAAGCGCCTTGT
GCCCCAGCATGTGAATCGACGGGCCCACAGTGGGAGTGACGGGCGGGCTA
AATACGATAGGAAGGGAGGGAAGAAGTGGCGGCGGCTACAGAAGCAGGAG
GAGCCAGAACCGCAGCAACAGCAAAGAGTCCAGCAACAGCAGCTGCAGTC
GATGCAGCAACAGCAGCAACAGCAGCTGCAGTCGATGCAGCAACAGCAGC
AACAGCAGCAAGTGCAGCAGCAACAACAGCCACAGGCGCAGGTTTGTAAC
ATTATGTGA
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protein sequence of NO05G01650.1

>NO05G01650.1-protein ID=NO05G01650.1-protein|Name=NO05G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MKMLPLIGWVLTLSRQQTASAAAMSSLNAFVLAPRLAGCMRPVVAKSAAS
GARRTAATHVTVTSTDTNPPLTSSASPSITREVSTTTITARPTATPLLDM
HDVTVQSNPSKGPMMQRLRVHVMPLESNKLEMLLAQVYARVLKGGGVLGM
DAEWQPEIARFERNPVALLQLAWEEDVFLVRLQHLQGEVPASLHKLMSDV
SIVKVGCNIGGDAKRLLQDYALDTRGHVDLKEVTSGLGLVRCKRRSMAWL
AKEFLSIEMDKSQQCSDWGNVELSPEQIKYSSIDAWVAGAIAGNLFRTYK
GQVGQPTCVSSFCKRLVPQHVNRRAHSGSDGRAKYDRKGGKKWRRLQKQE
EPEPQQQQRVQQQQLQSMQQQQQQQLQSMQQQQQQQQVQQQQQPQAQVCN
IM*
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Synonyms
Publications