NO05G01650.1, NO05G01650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01650.1
Unique NameNO05G01650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1209
Alignment locationchr5:454598..455806 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:454598..455806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G01650.1 vs.
Match: EWM28163.1 (3 -5 exonuclease domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 408.7 bits (1049), Expect = 2.100e-110
Identity = 222/360 (61.67%), Postives = 273/360 (75.83%), Query Frame = 0
Query:    2 KMLPLIGWVLTLSRQQTASAAAMSSLNAFVLAPRLAGCMRPVVAKSAASGA---RRTAATHVTVTSTDTNPPLTSSASPSITREVSTTTITARPTATPLLDMHDVTVQSNPSKGPMMQRLRVHVMPLESNKLEMLLAQVYARVLKGGGVLGMDAEWQPEIARFERNPVALLQLAWEEDVFLVRLQHLQGEVPASLHKLMSDVSIVKVGCNIGGDAKRLLQDYALDTRGHVDLKEVTSGLGLVRCKRRSMAWLAKEFLSIEMDKSQQCSDWGNVELSPEQIKYSSIDAWVAGAIAGNLFRTYKGQVGQPTCVSSFCKRLVPQHVNRRAHSGSDGRAKYDRKGGKKWRRLQKQEEPEPQQQQ 359
            ++ PL+GWVL  SRQ T SAA +SSL A V  PR+  C+RPVV  +A S     RR+  T  TV +       T S+       V+T +     + +P ++ HDVTV+ +  +GP +QRLRVHV+PLES+KLE+LL+QVY RV + GG++GMDAEWQPE+ RFERNPVALLQLAWEED+FLVRLQH++G+VPASLH+L++D  I+KVGCNIGGDAKRLL+DYALDTRGHVDL+EVT GLGLV+CKRRSMAWLAKEFL ++MDKSQQCSDWGN+ELS EQIKYSSIDAWVA AI G+LFR YK QVGQP C SSFCKRLVPQ+  RR   G   + K     G +W  +Q+Q+E E Q+Q+
Sbjct:    3 RVSPLLGWVLAQSRQWTGSAAFVSSLRALVSYPRV--CLRPVVPHAAVSSTCLRRRSTTTSSTVMAAFEADKSTVSSGTGTPPTVATIS-----SISPFINRHDVTVEVHSGRGPSLQRLRVHVLPLESDKLEVLLSQVYDRVAQRGGIVGMDAEWQPEVLRFERNPVALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREVTQGLGLVQCKRRSMAWLAKEFLRMDMDKSQQCSDWGNLELSAEQIKYSSIDAWVAPAIVGHLFRRYKSQVGQPPCPSSFCKRLVPQYWTRRVGDGHHAKIKRSPPDG-RW-EVQQQQEREQQKQR 353          
The following BLAST results are available for this feature:
BLAST of NO05G01650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28163.12.100e-11061.673 -5 exonuclease domain-containing protein [Nannoc... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01650NO05G01650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01650.1NO05G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01650.1.cds1NO05G01650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01650.1 ID=NO05G01650.1|Name=NO05G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1209bp
ATGAAGATGTTGCCTCTGATTGGTTGGGTCCTGACGCTTAGCCGGCAGCA
AACTGCCTCGGCCGCCGCCATGTCGTCACTCAATGCCTTTGTTTTGGCGC
CGCGGCTGGCAGGATGCATGCGACCCGTCGTCGCGAAATCTGCCGCGAGC
GGGGCAAGGAGGACTGCCGCCACTCACGTCACTGTGACCTCCACCGACAC
AAACCCTCCTCTCACTTCCAGTGCCAGCCCTTCAATCACAAGAGAGGTAT
CCACCACCACTATTACGGCTAGGCCAACTGCCACACCGTTGTTGGACATG
CACGATGTGACCGTCCAGTCGAACCCCAGCAAAGGCCCTATGATGCAGCG
CCTCCGTGTCCACGTCATGCCCCTGGAGTCGAATAAGCTCGAGATGCTGC
TCGCACAGGTCTATGCCCGCGTCCTTAAGGGAGGCGGCGTGTTAGGGATG
GATGCCGAGTGGCAGCCGGAGATTGCACGCTTTGAAAGAAATCCTGTGGC
GTTGCTACAGCTTGCGTGGGAGGAAGATGTCTTTTTGGTGCGTCTCCAGC
ATTTACAAGGAGAGGTGCCCGCCTCCTTGCACAAATTAATGTCCGATGTA
AGTATTGTTAAGGTAGGATGTAATATTGGGGGGGATGCGAAGCGGCTACT
TCAAGACTATGCGCTCGATACCCGCGGACACGTGGACCTTAAGGAAGTCA
CTTCCGGGTTGGGTCTTGTGCGATGCAAACGACGGAGCATGGCCTGGCTT
GCCAAGGAGTTTTTGAGCATCGAAATGGACAAGTCGCAACAGTGTTCGGA
CTGGGGTAATGTAGAACTGTCTCCAGAACAGATAAAATATTCGAGTATCG
ATGCCTGGGTTGCCGGAGCAATAGCGGGGAATCTTTTTAGGACGTATAAA
GGTCAGGTAGGACAGCCCACATGCGTATCCTCTTTTTGCAAGCGCCTTGT
GCCCCAGCATGTGAATCGACGGGCCCACAGTGGGAGTGACGGGCGGGCTA
AATACGATAGGAAGGGAGGGAAGAAGTGGCGGCGGCTACAGAAGCAGGAG
GAGCCAGAACCGCAGCAACAGCAAAGAGTCCAGCAACAGCAGCTGCAGTC
GATGCAGCAACAGCAGCAACAGCAGCTGCAGTCGATGCAGCAACAGCAGC
AACAGCAGCAAGTGCAGCAGCAACAACAGCCACAGGCGCAGGTTTGTAAC
ATTATGTGA
back to top

protein sequence of NO05G01650.1

>NO05G01650.1-protein ID=NO05G01650.1-protein|Name=NO05G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MKMLPLIGWVLTLSRQQTASAAAMSSLNAFVLAPRLAGCMRPVVAKSAAS
GARRTAATHVTVTSTDTNPPLTSSASPSITREVSTTTITARPTATPLLDM
HDVTVQSNPSKGPMMQRLRVHVMPLESNKLEMLLAQVYARVLKGGGVLGM
DAEWQPEIARFERNPVALLQLAWEEDVFLVRLQHLQGEVPASLHKLMSDV
SIVKVGCNIGGDAKRLLQDYALDTRGHVDLKEVTSGLGLVRCKRRSMAWL
AKEFLSIEMDKSQQCSDWGNVELSPEQIKYSSIDAWVAGAIAGNLFRTYK
GQVGQPTCVSSFCKRLVPQHVNRRAHSGSDGRAKYDRKGGKKWRRLQKQE
EPEPQQQQRVQQQQLQSMQQQQQQQLQSMQQQQQQQQVQQQQQPQAQVCN
IM*
back to top

mRNA from alignment at chr5:454598..455806+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01650.1 ID=NO05G01650.1|Name=NO05G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1209bp|location=Sequence derived from alignment at chr5:454598..455806+ (Nannochloropsis oceanica)
ATGAAGATGTTGCCTCTGATTGGTTGGGTCCTGACGCTTAGCCGGCAGCA AACTGCCTCGGCCGCCGCCATGTCGTCACTCAATGCCTTTGTTTTGGCGC CGCGGCTGGCAGGATGCATGCGACCCGTCGTCGCGAAATCTGCCGCGAGC GGGGCAAGGAGGACTGCCGCCACTCACGTCACTGTGACCTCCACCGACAC AAACCCTCCTCTCACTTCCAGTGCCAGCCCTTCAATCACAAGAGAGGTAT CCACCACCACTATTACGGCTAGGCCAACTGCCACACCGTTGTTGGACATG CACGATGTGACCGTCCAGTCGAACCCCAGCAAAGGCCCTATGATGCAGCG CCTCCGTGTCCACGTCATGCCCCTGGAGTCGAATAAGCTCGAGATGCTGC TCGCACAGGTCTATGCCCGCGTCCTTAAGGGAGGCGGCGTGTTAGGGATG GATGCCGAGTGGCAGCCGGAGATTGCACGCTTTGAAAGAAATCCTGTGGC GTTGCTACAGCTTGCGTGGGAGGAAGATGTCTTTTTGGTGCGTCTCCAGC ATTTACAAGGAGAGGTGCCCGCCTCCTTGCACAAATTAATGTCCGATGTA AGTATTGTTAAGGTAGGATGTAATATTGGGGGGGATGCGAAGCGGCTACT TCAAGACTATGCGCTCGATACCCGCGGACACGTGGACCTTAAGGAAGTCA CTTCCGGGTTGGGTCTTGTGCGATGCAAACGACGGAGCATGGCCTGGCTT GCCAAGGAGTTTTTGAGCATCGAAATGGACAAGTCGCAACAGTGTTCGGA CTGGGGTAATGTAGAACTGTCTCCAGAACAGATAAAATATTCGAGTATCG ATGCCTGGGTTGCCGGAGCAATAGCGGGGAATCTTTTTAGGACGTATAAA GGTCAGGTAGGACAGCCCACATGCGTATCCTCTTTTTGCAAGCGCCTTGT GCCCCAGCATGTGAATCGACGGGCCCACAGTGGGAGTGACGGGCGGGCTA AATACGATAGGAAGGGAGGGAAGAAGTGGCGGCGGCTACAGAAGCAGGAG GAGCCAGAACCGCAGCAACAGCAAAGAGTCCAGCAACAGCAGCTGCAGTC GATGCAGCAACAGCAGCAACAGCAGCTGCAGTCGATGCAGCAACAGCAGC AACAGCAGCAAGTGCAGCAGCAACAACAGCCACAGGCGCAGGTTTGTAAC ATTATGTGA
back to top

Coding sequence (CDS) from alignment at chr5:454598..455806+

>NO05G01650.1 ID=NO05G01650.1|Name=NO05G01650.1|organism=Nannochloropsis oceanica|type=CDS|length=1209bp|location=Sequence derived from alignment at chr5:454598..455806+ (Nannochloropsis oceanica)
ATGAAGATGTTGCCTCTGATTGGTTGGGTCCTGACGCTTAGCCGGCAGCA
AACTGCCTCGGCCGCCGCCATGTCGTCACTCAATGCCTTTGTTTTGGCGC
CGCGGCTGGCAGGATGCATGCGACCCGTCGTCGCGAAATCTGCCGCGAGC
GGGGCAAGGAGGACTGCCGCCACTCACGTCACTGTGACCTCCACCGACAC
AAACCCTCCTCTCACTTCCAGTGCCAGCCCTTCAATCACAAGAGAGGTAT
CCACCACCACTATTACGGCTAGGCCAACTGCCACACCGTTGTTGGACATG
CACGATGTGACCGTCCAGTCGAACCCCAGCAAAGGCCCTATGATGCAGCG
CCTCCGTGTCCACGTCATGCCCCTGGAGTCGAATAAGCTCGAGATGCTGC
TCGCACAGGTCTATGCCCGCGTCCTTAAGGGAGGCGGCGTGTTAGGGATG
GATGCCGAGTGGCAGCCGGAGATTGCACGCTTTGAAAGAAATCCTGTGGC
GTTGCTACAGCTTGCGTGGGAGGAAGATGTCTTTTTGGTGCGTCTCCAGC
ATTTACAAGGAGAGGTGCCCGCCTCCTTGCACAAATTAATGTCCGATGTA
AGTATTGTTAAGGTAGGATGTAATATTGGGGGGGATGCGAAGCGGCTACT
TCAAGACTATGCGCTCGATACCCGCGGACACGTGGACCTTAAGGAAGTCA
CTTCCGGGTTGGGTCTTGTGCGATGCAAACGACGGAGCATGGCCTGGCTT
GCCAAGGAGTTTTTGAGCATCGAAATGGACAAGTCGCAACAGTGTTCGGA
CTGGGGTAATGTAGAACTGTCTCCAGAACAGATAAAATATTCGAGTATCG
ATGCCTGGGTTGCCGGAGCAATAGCGGGGAATCTTTTTAGGACGTATAAA
GGTCAGGTAGGACAGCCCACATGCGTATCCTCTTTTTGCAAGCGCCTTGT
GCCCCAGCATGTGAATCGACGGGCCCACAGTGGGAGTGACGGGCGGGCTA
AATACGATAGGAAGGGAGGGAAGAAGTGGCGGCGGCTACAGAAGCAGGAG
GAGCCAGAACCGCAGCAACAGCAAAGAGTCCAGCAACAGCAGCTGCAGTC
GATGCAGCAACAGCAGCAACAGCAGCTGCAGTCGATGCAGCAACAGCAGC
AACAGCAGCAAGTGCAGCAGCAACAACAGCCACAGGCGCAGGTTTGTAAC
ATTATGTGA
back to top
Synonyms
Publications