NO05G01630, NO05G01630 (gene) Nannochloropsis oceanica

Overview
NameNO05G01630
Unique NameNO05G01630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2799
Alignment locationchr5:450465..453263 +

Link to JBrowse

Properties
Property NameValue
Description30s ribosomal protein s5
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:450465..453263 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:1990904ribonucleoprotein complex
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR020568Ribosomal_S5_D2-typ_fold
IPR035979RBD_domain_sf
IPR000851Ribosomal_S5
IPR005324Ribosomal_S5_C
IPR013810Ribosomal_S5_N
IPR000504RRM_dom
Homology
BLAST of NO05G01630 vs. NCBI_GenBank
Match: EWM28236.1 (30s ribosomal protein s5 [Nannochloropsis gaditana])

HSP 1 Score: 1011.5 bits (2614), Expect = 1.700e-291
Identity = 556/890 (62.47%), Postives = 634/890 (71.24%), Query Frame = 0
Query:   73 AAGLGYTLRVEGRLAEAKARALGPKDVVALFGAFEPYNIVIHPXXXXXXXXXXXXXXXXXXXXXXXXLATFQVPSLKYAQEIAQSFQQDETWGERITVHQEKETFPVFISGLPEGVKGEELKEQIESAAACDPKQLKASGEPEPNGEFDPEVKAKSESLLARTAIDVYDSYAVFKCPDKFTSLGLLQGSFQLTPAGEGGNGLESKQQAASEEGEITAPAGEVLSPISAVGGEQQGGEGEEDDE------NDPSAVLSYAAWKTYPVRVNGLPADATVEEVMATFRKYMPYDVELLPVES---------GTRGAYLRFARRVQGTECVAEMKDVTVRGDKTLEVRRAWEKAFPILIEGGEEGRKTTVEELRQLVTTLRMNKDLHVLDAELVEGGAAAIVRFGSQPAAEEGMKLLSAGVGGRGKRVSLAWRDFRVDLNNLPLEVTEEELREMVHLTTPSKVRVSAPIGGKRRSGSVSFTTRPEAELAFSQLSGTGLPDLKLRKAWAVYRLRVKGLPLDTTEEDVREILKGGYEPFQVDFPRSRKGNLKGEAVLRFAAYDQVVAAIGRLYGRDSPLDEAEHQARWTTAGEGISFDDPYGSLAEEVERMSTAEEGKEGMKKGGKEASNAQQELDAMVEKALEGEEGMEELVHRTAPFLKEGDDMSRHGEEGGTE---------------RGSXXXXXXXXXXXXXXXXXXXXXXXXXXXSVNPFGIYPEGKWVKMLVDTDTTQKIIKGGHILSYRALVVVGNLNGCGGYGVGKAPSMEEAQIRAYRAAKKNLIHVDLYRNRCVTTALYGKHNNCRIYIQAGHPGRPHKEGRMINDILRVLGVECGEARSVGRRNPYSVVRAIFHAISKHEGVEELSRKRGRRLISVSKARYLGL 933
            AA LGYTLRVEG   EAKA+AL PKDVV LFGAFEPYNIV+ P                        LATFQVPSLKYA+EIA SF  DE+WG+RITVHQE+ETFPVFISGLPEGV G ELK+QI+ A A DPKQ +  G  EP      E K +S+SLL  TAID YD+YAVF+CPDK++S+GLLQGSFQL P G    G   +++  +                                        D   VLSYAAWKTYPVRVNGLP DA   EVMA F KYMPYDVE+LPVE+         GTRGAYLRFARR+QG EC +EM+DV+VR +  L+VRRAWEK +P+LIE      K T +EL Q++  L+  KD  +LDAEL+E GAAA++RFGSQ  AEEG+ +L AG G   ++V  AW+DFRVD+ NLPLEVT+EELREMVHLTTPSKV VS P+GG+ R+GS+SFTTR EA+LAFSQLSGTGLPDLKLRKAWAVYRLRVKGLP DT EED+RE+L+GGYEPFQVDFPRSRKGN KGEAVLRF  YDQ+VAAIGRLYGRDSP+DE E+QARW +AGEG+SFDDP GSL EE+ R+  +       + G          LDA+ ++  + E G                     GEEGG E                  XXXXXXX      XXXXXXXXX      VNPF I+PEGKWVKMLVDTDTTQKIIKGGHILSYRALV+VGNL GCGG+GVGK  ++EEAQIRAYRAAKKNLIH+DLYRNRC+TT LYGKHNNCRIYIQAG P RPHKEGRMIND+LR++GVECGEARS+GRRNPYSVVRA+FHAISKHEGVE LSRKRGRRLISVSKARYLGL
Sbjct:   60 AASLGYTLRVEGHFDEAKAQALRPKDVVTLFGAFEPYNIVMRPPGAVGGGAKYQAKKGNSLPPPPLVLATFQVPSLKYAREIAHSFHHDESWGDRITVHQEQETFPVFISGLPEGVSGSELKKQIDRAGASDPKQRRVMGGSEPAS----ESKGQSKSLLTETAIDAYDTYAVFRCPDKYSSMGLLQGSFQLAPVGPKARGNTGEKRLGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEDARGVLSYAAWKTYPVRVNGLPGDANEGEVMAVFSKYMPYDVEVLPVEASEAADGNEGGTRGAYLRFARRIQGVECASEMQDVSVR-NNVLQVRRAWEKVYPLLIEAASGEGKVTADELEQVLAPLKRMKDSSLLDAELLEEGAAAVIRFGSQTGAEEGLGVLEAGAGSGRRKVRPAWKDFRVDVRNLPLEVTQEELREMVHLTTPSKVAVSLPVGGRYRTGSLSFTTREEADLAFSQLSGTGLPDLKLRKAWAVYRLRVKGLPADTREEDLREVLRGGYEPFQVDFPRSRKGNPKGEAVLRFRTYDQLVAAIGRLYGRDSPMDEVENQARWASAGEGMSFDDPAGSLEEELARLPPSASSPLSTETG--------MGLDALFDRHWKEERG--------------------PGEEGGGEAXXXXXXXXXXXXXXXXXXXXXXXXSGKDVQXXXXXXXXXSYAGRDVNPFAIHPEGKWVKMLVDTDTTQKIIKGGHILSYRALVLVGNLKGCGGWGVGKGATLEEAQIRAYRAAKKNLIHIDLYRNRCITTDLYGKHNNCRIYIQAGQPNRPHKEGRMINDMLRIMGVECGEARSIGRRNPYSVVRALFHAISKHEGVEALSRKRGRRLISVSKARYLGL 916          
BLAST of NO05G01630 vs. NCBI_GenBank
Match: XP_005853580.1 (serine threonine protein, partial [Nannochloropsis gaditana CCMP526] >EKU22776.1 serine threonine protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 503.8 bits (1296), Expect = 1.100e-138
Identity = 250/357 (70.03%), Postives = 290/357 (81.23%), Query Frame = 0
Query:  314 DENDPSAVLSYAAWKTYPVRVNGLPADATVEEVMATFRKYMPYDVELLPVES---------GTRGAYLRFARRVQGTECVAEMKDVTVRGDKTLEVRRAWEKAFPILIEGGEEGRKTTVEELRQLVTTLRMNKDLHVLDAELVEGGAAAIVRFGSQPAAEEGMKLLSAGVGGRGKRVSLAWRDFRVDLNNLPLEVTEEELREMVHLTTPSKVRVSAPIGGKRRSGSVSFTTRPEAELAFSQLSGTGLPDLKLRKAWAVYRLRVKGLPLDTTEEDVREILKGGYEPFQVDFPRSRKGNLKGEAVLRFAAYDQVVAAIGRLYGRDSPLDEAEHQARWTTAGEGISFDDPYGSLAEEVER 662
            D  D   VLSYAAWKTYPVRVNGLP DA   EVMA F KYMPYDVE+LPVE+         GTRGAYLRFARR+QG EC +EM+DV+VR +  L+VRRAWEK +P+LIE      K T +EL Q++  L+  KD  +LDAEL++ GAAA++RFGSQ  AEEG+ +L AG G   ++V  AW+DFRVD+ NLPLEVT+EELREMVHLTTPSKV VS P+GG+ R+GS+SFTTR EA+LAFSQLSGTGLPDLKLRKAWAVYRLRVKGLP DT EED+RE+L+GGYEPFQVDFPRSRKGN KGEAVLRF  YDQ+VAAIGRLYGRDSP+DE E+QARW +AGEG+SFDDP GSL EE+ R
Sbjct:    1 DGEDARGVLSYAAWKTYPVRVNGLPGDANEGEVMAVFSKYMPYDVEVLPVEASEAADGNEGGTRGAYLRFARRIQGVECASEMQDVSVR-NNVLQVRRAWEKVYPLLIEAASGEGKVTADELEQVLAPLKRMKDSSLLDAELLKEGAAAVIRFGSQTGAEEGLGVLEAGAGSGRRKVRPAWKDFRVDVRNLPLEVTQEELREMVHLTTPSKVAVSLPVGGRYRTGSLSFTTREEADLAFSQLSGTGLPDLKLRKAWAVYRLRVKGLPADTREEDLREVLRGGYEPFQVDFPRSRKGNPKGEAVLRFRTYDQLVAAIGRLYGRDSPMDEVENQARWASAGEGMSFDDPAGSLEEELAR 356          
BLAST of NO05G01630 vs. NCBI_GenBank
Match: GAX23188.1 (small subunit ribosomal protein S5 [Fistulifera solaris])

HSP 1 Score: 146.7 bits (369), Expect = 3.500e-31
Identity = 69/160 (43.12%), Postives = 105/160 (65.62%), Query Frame = 0
Query:  768 GKWVKMLVDTDTTQKIIKGGHILSYRALVVVGNLNGCGGYGVGKAPSMEEAQIRAYRAAKKNLIHVDLYRNRCVTTALYGKHNNCRIYIQAGHPGRPHKEGRMINDILRVLGVECGEARSVGRRNPYSVVRAIFHAISKHEGVEELSRKRGRRLISVSKA 928
            G+W +MLV  D T K+ +GG + SYRALV+ GNLNGCGG+G+GK+     A   A R  K+N+  VD Y+   +T+ L GK N+C++Y+++   G   +   +I +IL+  G+    A+S G RNPY+V RA F A+  HE +E+++ KRG+RL+S+ +A
Sbjct:  238 GEWSEMLVTVDRTTKLWRGGRLESYRALVIGGNLNGCGGFGIGKSKDPINAVAVASRKCKRNIFFVDRYQGNGLTSDLAGKQNSCKVYLRSTDDGL--RGNHLIREILKRFGITNCVAKSHGNRNPYNVTRATFKALMTHESIEDIALKRGKRLVSIDRA 395          
BLAST of NO05G01630 vs. NCBI_GenBank
Match: GAX22149.1 (small subunit ribosomal protein S5 [Fistulifera solaris])

HSP 1 Score: 146.7 bits (369), Expect = 3.500e-31
Identity = 69/160 (43.12%), Postives = 105/160 (65.62%), Query Frame = 0
Query:  768 GKWVKMLVDTDTTQKIIKGGHILSYRALVVVGNLNGCGGYGVGKAPSMEEAQIRAYRAAKKNLIHVDLYRNRCVTTALYGKHNNCRIYIQAGHPGRPHKEGRMINDILRVLGVECGEARSVGRRNPYSVVRAIFHAISKHEGVEELSRKRGRRLISVSKA 928
            G+W +MLV  D T K+ +GG + SYRALV+ GNLNGCGG+G+GK+     A   A R  K+N+  VD Y+   +T+ L GK N+C++Y+++   G   +   +I +IL+  G+    A+S G RNPY+V RA F A+  HE +E+++ KRG+RL+S+ +A
Sbjct:  238 GEWSEMLVTVDRTTKLWRGGRLESYRALVIGGNLNGCGGFGIGKSKDPINAVAVASRKCKRNIFFVDRYQGNGLTSDLAGKQNSCKVYLRSTDDGL--RGNHLIREILKRFGITNCVAKSHGNRNPYNVTRATFKALMTHESIEDIALKRGKRLVSIDRA 395          
BLAST of NO05G01630 vs. NCBI_GenBank
Match: CBJ31510.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 144.1 bits (362), Expect = 2.300e-30
Identity = 67/162 (41.36%), Postives = 105/162 (64.81%), Query Frame = 0
Query:  767 EGKWVKMLVDTDTTQKIIKGGHILSYRALVVVGNLNGCGGYGVGKAPSMEEAQIRAYRAAK--KNLIHVDLYRNRCVTTALYGKHNNCRIYIQAGHPGRPHKEGRMINDILRVLGVECGEARSVGRRNPYSVVRAIFHAISKHEGVEELSRKRGRRLISVSK 927
            +G+W ++LV TD   K +KGG  + YRALV VGNL+G GG+ +GKA +   A   A R AK   NL++V+ Y+   +   L GKHN  ++YI +  PG   + G++  DIL  +G+  G  + +GRRN YS++ A+F A++KH G+E ++R RG+R++S+ +
Sbjct:  202 QGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQR 363          
BLAST of NO05G01630 vs. NCBI_GenBank
Match: EJK56771.1 (hypothetical protein THAOC_23280 [Thalassiosira oceanica])

HSP 1 Score: 138.7 bits (348), Expect = 9.500e-29
Identity = 70/165 (42.42%), Postives = 103/165 (62.42%), Query Frame = 0
Query:  768 GKWVKMLVDTDTTQKIIKGGHILSYRALVVVGNLNGCGGYGVGKAPSMEEAQIRAYRAAKKNLIHVDLYRNRCVTTALYGKHNNCRIYIQAGHPGRPHKEGRMINDILRVLGVECGEARSVGRRNPYSVVRAIFHAISKHEGVEELSRKRGRRLISVSKARYLGL 933
            G W +  V  D  QK+ +GG  + YRALV+ GN NG  G+G+GKA S  EA I+A +  K+N+ +VD Y N  VT  L G+HN+C++ I+A  P        +I +IL+  G+     +S G RNPY+VV A F A+   E +EE++ KRG++LI++ +AR LG+
Sbjct:  353 GPWSECTVKVDRVQKVERGGTTVRYRALVIGGNGNGAAGFGIGKALSPNEAIIKAGKHCKRNVFYVDRYLNSGVTYDLAGRHNSCKVQIRAVTPDYGLHGHPLICEILKFSGISDASTKSHGNRNPYNVVYATFKALMTQESLEEVALKRGKKLINMQRARRLGI 517          
BLAST of NO05G01630 vs. NCBI_GenBank
Match: XP_009034294.1 (hypothetical protein AURANDRAFT_22111 [Aureococcus anophagefferens] >EGB10703.1 hypothetical protein AURANDRAFT_22111 [Aureococcus anophagefferens])

HSP 1 Score: 138.3 bits (347), Expect = 1.200e-28
Identity = 69/162 (42.59%), Postives = 99/162 (61.11%), Query Frame = 0
Query:  766 PEGKWVKMLVDTDTTQKIIKGGHILSYRALVVVGNLNGCGGYGVGKAPSMEEAQIRAYRAAKKNLIHVDLYRNRCVTTALYGKHNNCRIYIQAGHPGRPHKEGRMINDILRVLGVECGEARSVGRRNPYSVVRAIFHAISKHEGVEELSRKRGRRLISVSKA 928
            PEG+W + +V  D  QK+++GG I+ YRALV VGNL G GG+  GK  S ++A  RA R AK +L  VD +R+  +   + GKHNNC + I A  PG+    G +   I+  LG      ++ GRR+PYS V A F A++    VE+++RKRGRR++ +  A
Sbjct:   41 PEGRWAETIVKIDRVQKVVRGGTIMRYRALVAVGNLMGAGGFAFGKGHSPQDAVARASRRAKTDLRFVDRHRDVALAHDVRGKHNNCTVDIYAVPPGKGMVGGALGRAIMTQLGFSSFTIKARGRRSPYSYVAATFDALANLASVEDIARKRGRRILEIEHA 202          
BLAST of NO05G01630 vs. NCBI_GenBank
Match: CBJ31507.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 135.6 bits (340), Expect = 8.000e-28
Identity = 65/162 (40.12%), Postives = 103/162 (63.58%), Query Frame = 0
Query:  767 EGKWVKMLVDTDTTQKIIKGGHILSYRALVVVGNLNGCGGYGVGKAPSMEEAQIRAYRAAK--KNLIHVDLYRNRCVTTALYGKHNNCRIYIQAGHPGRPHKEGRMINDILRVLGVECGEARSVGRRNPYSVVRAIFHAISKHEGVEELSRKRGRRLISVSK 927
            +G+W ++LV TD   K +KGG  + YRALV VGNL+G GG+ +GKA +   A   A R AK   NL++V+ Y+   +   L GKHN  ++YI +       + G++  DIL  +G+  G  + +GRRN YS++ A+F A++KH G+E ++R RG+R++S+ +
Sbjct:  141 QGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWS-------RAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQR 295          
BLAST of NO05G01630 vs. NCBI_GenBank
Match: OEU08388.1 (30S ribosomal protein S5 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 132.5 bits (332), Expect = 6.800e-27
Identity = 64/160 (40.00%), Postives = 105/160 (65.62%), Query Frame = 0
Query:  773 MLVDTDTTQKIIKGGHILSYRALVVVGNLNGCGGYGVGKAPSMEEAQIRAYRAAKKNLIHVDLYRNRCVTTALYGKHNNCRIYIQAGHPGRPHKEGRMINDILRVLGVECGEARSVGRRNPYSVVRAIFHAISKHEGVEELSRKRGRRLISVSKARYLGL 933
            ML+ TD   K+ +GG ++S+RALV+ GN  GCGG+G+GKA   E+A   A R AK+N+  VD +RN  +T  L G+ N+C++ ++  + G   +   +  +IL++ G+    A++ G RN Y+VVRA F A+  HE +++++ KRG RL+++ KA+ LG+
Sbjct:    1 MLIRTDRVSKMWRGGRVVSFRALVIGGNTKGCGGFGLGKAFEPEDAVEIACRMAKRNIFFVDRFRNMTITRDLVGRQNSCKVQLRVTNNGL--RGNPLCCEILKLFGITNVVAKAHGSRNHYNVVRATFKALLTHESLDDIAMKRGIRLVNLEKAKRLGI 158          
BLAST of NO05G01630 vs. NCBI_GenBank
Match: XP_002176761.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51224.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 128.6 bits (322), Expect = 9.800e-26
Identity = 65/163 (39.88%), Postives = 100/163 (61.35%), Query Frame = 0
Query:  768 GKWVKMLVDTDTTQKIIKGGHILSYRALVVVGNLNGCGGYGVGKAPSMEEAQIRAYRAAKKNLIHVDLYRNRCVTTALYGKHNNCRIYIQA---GHPGRPHKEGRMINDILRVLGVECGEARSVGRRNPYSVVRAIFHAISKHEGVEELSRKRGRRLISVSKA 928
            G+W +ML+    T K+ +GG + SYRALV+ GN NGCGG+G+GK+     A   A R  KKN+  VD Y+N  +T  L GK N+C   + +   G  G P     ++ +IL+  G+     ++ G RNP++VVRA F A+  HE +E+++ KRG+R++S+ +A
Sbjct:  218 GEWSEMLITVGRTTKLWRGGRLESYRALVIGGNTNGCGGFGIGKSWDPVLAVDVAGRNCKKNIFFVDRYQNDGITRDLVGKQNSCIAKVMSRDNGLHGNP-----LMREILKRFGITNASCKAHGNRNPFNVVRATFKALMTHESLEDIALKRGKRILSLDRA 375          
The following BLAST results are available for this feature:
BLAST of NO05G01630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28236.11.700e-29162.4730s ribosomal protein s5 [Nannochloropsis gaditana... [more]
XP_005853580.11.100e-13870.03serine threonine protein, partial [Nannochloropsis... [more]
GAX23188.13.500e-3143.13small subunit ribosomal protein S5 [Fistulifera so... [more]
GAX22149.13.500e-3143.13small subunit ribosomal protein S5 [Fistulifera so... [more]
CBJ31510.12.300e-3041.36conserved unknown protein [Ectocarpus siliculosus][more]
EJK56771.19.500e-2942.42hypothetical protein THAOC_23280 [Thalassiosira oc... [more]
XP_009034294.11.200e-2842.59hypothetical protein AURANDRAFT_22111 [Aureococcus... [more]
CBJ31507.18.000e-2840.12conserved unknown protein [Ectocarpus siliculosus][more]
OEU08388.16.800e-2740.0030S ribosomal protein S5 [Fragilariopsis cylindrus... [more]
XP_002176761.19.800e-2639.88predicted protein [Phaeodactylum tricornutum CCAP ... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003706NSK003706Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01630.1NO05G01630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583944gene_2951Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g87gene2344Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01630.1NO05G01630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01630 ID=NO05G01630|Name=NO05G01630|organism=Nannochloropsis oceanica|type=gene|length=2799bp
ATGCTGGCGGCAGCACGCGGGCGAGGCACACATAGCAGCCATTCGGCTCT
GGCAAGATACTGCACGTCGCACCACTCCCTCCATCATCATCATCATCATC
TGGCATTGCTCGGCGGCAGCTTTAGTAGTAGCACCAGCGCAAATGTCAGC
AGAATACGAACGCGAGAACAGCTTCAGCAACCACTGCGTTGCCTTAGCGG
TGGCAACATGTCTCCCGCAGCTGGCCTCGGTTACACGTTGCGCGTAGAAG
GCCGTCTGGCAGAGGCCAAGGCGCGGGCATTGGGACCCAAGGACGTGGTA
GCGTTGTTTGGTGCCTTTGAGCCTTACAATATTGTCATTCACCCTCCCGG
TGCCGTTGGTGGTGGGGCCAAATATCAAGCGAAGAAGGGTAGCTCCCTCC
CTCCCCCGCCCCCAGTGCTGGCGACTTTCCAAGTGCCTTCCTTAAAGTAC
GCCCAGGAGATAGCACAAAGTTTTCAGCAGGACGAGACGTGGGGAGAGCG
GATTACTGTGCATCAAGAGAAGGAAACTTTCCCTGTGTTTATATCTGGGT
TGCCTGAGGGAGTGAAGGGAGAGGAGTTGAAGGAGCAGATTGAGAGTGCT
GCTGCGTGTGACCCGAAGCAACTGAAAGCCAGCGGGGAGCCGGAGCCCAA
TGGGGAATTCGACCCGGAAGTCAAGGCGAAGAGCGAGAGCCTATTGGCAC
GGACGGCGATTGATGTGTACGATTCTTACGCAGTCTTCAAGTGTCCCGAT
AAATTCACGAGCTTGGGGCTCTTGCAGGGATCATTCCAGTTGACCCCGGC
GGGGGAGGGAGGGAACGGGCTAGAGAGCAAGCAACAAGCGGCTTCTGAGG
AGGGCGAGATTACGGCTCCTGCTGGTGAGGTGTTATCGCCGATTAGTGCG
GTGGGTGGAGAGCAGCAGGGGGGGGAAGGCGAGGAGGATGACGAGAATGA
CCCGTCGGCGGTGTTGAGTTACGCGGCGTGGAAGACGTACCCTGTGCGTG
TGAACGGCTTGCCAGCTGACGCAACAGTGGAGGAGGTAATGGCTACGTTT
CGGAAGTACATGCCTTACGATGTGGAGTTGTTGCCAGTGGAAAGTGGGAC
GAGGGGGGCGTATTTGAGATTTGCGCGCAGAGTGCAGGGGACGGAGTGTG
TGGCGGAGATGAAGGATGTGACGGTTCGAGGAGACAAGACGCTGGAGGTC
CGCCGGGCCTGGGAAAAGGCTTTCCCGATCTTGATTGAGGGGGGAGAGGA
AGGCAGGAAGACGACAGTGGAAGAGTTGCGGCAGCTTGTAACCACACTGA
GGATGAATAAGGACTTGCACGTGCTGGACGCCGAGTTGGTGGAGGGCGGG
GCTGCAGCTATCGTCCGCTTTGGCTCTCAACCCGCGGCTGAAGAGGGGAT
GAAGCTGTTGTCGGCCGGAGTAGGAGGAAGGGGAAAGAGGGTCAGTTTAG
CCTGGAGGGATTTCAGGGTCGATTTGAACAATCTCCCCCTGGAGGTCACG
GAGGAGGAGCTGCGGGAGATGGTGCATCTCACCACCCCGTCCAAGGTGAG
AGTGTCCGCCCCTATTGGTGGAAAGCGACGCAGTGGTAGTGTCTCATTCA
CCACGCGTCCGGAGGCCGAACTTGCCTTCTCCCAGCTCTCGGGCACGGGG
CTGCCGGACCTCAAATTGAGGAAGGCATGGGCAGTGTATCGCTTGAGGGT
GAAGGGGCTACCGCTCGATACCACGGAGGAGGATGTGCGGGAGATTTTGA
AAGGAGGTTACGAGCCGTTTCAGGTTGACTTTCCAAGAAGTCGGAAAGGA
AATTTAAAGGGGGAGGCGGTGCTTAGGTTTGCAGCGTACGATCAGGTAGT
GGCAGCCATTGGTCGATTGTATGGACGGGACTCGCCGCTGGACGAGGCGG
AGCACCAGGCCAGGTGGACCACGGCGGGGGAGGGGATAAGTTTTGATGAC
CCTTATGGGAGTCTTGCGGAGGAGGTGGAAAGGATGAGTACGGCGGAGGA
AGGGAAGGAGGGCATGAAGAAGGGAGGCAAGGAGGCTTCGAACGCCCAGC
AGGAGTTAGACGCGATGGTTGAGAAGGCGCTGGAGGGGGAGGAAGGGATG
GAGGAGTTGGTACACCGGACGGCACCCTTTTTGAAAGAAGGGGATGATAT
GTCGAGGCATGGGGAGGAGGGAGGGACGGAGAGAGGGTCTGGCTTAGGCT
TGTCTCCGGAAGATGAAAAAGAGGAGGAGGAGGAGGAGGAGGAGGATGAG
GACGAAGGGAGAGACAAGGAGTCTGTGAATCCGTTTGGAATTTACCCGGA
AGGAAAGTGGGTGAAGATGTTGGTGGACACGGACACGACGCAGAAGATCA
TCAAAGGGGGGCACATCCTCTCATATCGGGCGTTGGTGGTGGTGGGGAAT
CTTAACGGGTGCGGTGGATATGGGGTGGGGAAGGCGCCTAGCATGGAGGA
GGCGCAGATACGGGCGTATCGGGCCGCGAAGAAGAATTTGATTCACGTGG
ACTTGTACCGGAATCGGTGCGTGACGACGGCATTGTACGGAAAACATAAC
AACTGTCGGATCTATATTCAAGCGGGGCATCCAGGAAGGCCGCATAAGGA
GGGGAGGATGATAAATGATATACTGAGGGTCCTTGGGGTAGAGTGCGGCG
AGGCGAGGAGTGTGGGGAGGCGGAACCCCTATTCGGTTGTTCGCGCTATT
TTCCACGCGATTTCGAAGCATGAGGGGGTGGAGGAGTTGTCGAGGAAGAG
GGGGAGGAGGTTGATAAGTGTGTCCAAGGCAAGGTATTTGGGCTTGTAG
back to top

protein sequence of NO05G01630.1

>NO05G01630.1-protein ID=NO05G01630.1-protein|Name=NO05G01630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=933bp
MLAAARGRGTHSSHSALARYCTSHHSLHHHHHHLALLGGSFSSSTSANVS
RIRTREQLQQPLRCLSGGNMSPAAGLGYTLRVEGRLAEAKARALGPKDVV
ALFGAFEPYNIVIHPPGAVGGGAKYQAKKGSSLPPPPPVLATFQVPSLKY
AQEIAQSFQQDETWGERITVHQEKETFPVFISGLPEGVKGEELKEQIESA
AACDPKQLKASGEPEPNGEFDPEVKAKSESLLARTAIDVYDSYAVFKCPD
KFTSLGLLQGSFQLTPAGEGGNGLESKQQAASEEGEITAPAGEVLSPISA
VGGEQQGGEGEEDDENDPSAVLSYAAWKTYPVRVNGLPADATVEEVMATF
RKYMPYDVELLPVESGTRGAYLRFARRVQGTECVAEMKDVTVRGDKTLEV
RRAWEKAFPILIEGGEEGRKTTVEELRQLVTTLRMNKDLHVLDAELVEGG
AAAIVRFGSQPAAEEGMKLLSAGVGGRGKRVSLAWRDFRVDLNNLPLEVT
EEELREMVHLTTPSKVRVSAPIGGKRRSGSVSFTTRPEAELAFSQLSGTG
LPDLKLRKAWAVYRLRVKGLPLDTTEEDVREILKGGYEPFQVDFPRSRKG
NLKGEAVLRFAAYDQVVAAIGRLYGRDSPLDEAEHQARWTTAGEGISFDD
PYGSLAEEVERMSTAEEGKEGMKKGGKEASNAQQELDAMVEKALEGEEGM
EELVHRTAPFLKEGDDMSRHGEEGGTERGSGLGLSPEDEKEEEEEEEEDE
DEGRDKESVNPFGIYPEGKWVKMLVDTDTTQKIIKGGHILSYRALVVVGN
LNGCGGYGVGKAPSMEEAQIRAYRAAKKNLIHVDLYRNRCVTTALYGKHN
NCRIYIQAGHPGRPHKEGRMINDILRVLGVECGEARSVGRRNPYSVVRAI
FHAISKHEGVEELSRKRGRRLISVSKARYLGL*
back to top
Synonyms
Publications