NO05G01600, NO05G01600 (gene) Nannochloropsis oceanica

Overview
NameNO05G01600
Unique NameNO05G01600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length997
Alignment locationchr5:445073..446069 -

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Properties
Property NameValue
DescriptionGtp-binding protein sar1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:445073..446069 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005794Golgi apparatus
GO:0005783endoplasmic reticulum
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR006687Small_GTPase_SAR1
IPR006689Small_GTPase_ARF/SAR
Homology
[Close]
BLAST of NO05G01600 vs. NCBI_GenBank
Match: OEU18946.1 (small GTP-binding protein sar1 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 316.2 bits (809), Expect = 6.900e-83
Identity = 148/192 (77.08%), Postives = 171/192 (89.06%), Query Frame = 0 
Query:    2 FLMDWVYSALSYLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDDLANVPFLVLGNKIDVPRAVSEEQLRYALGLQNTYGKDSSGGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 194
            F +DW+YSAL+ LGLYHK+AKILFLGLDNAGKTTLLHMLKENRVQVH PT+HPNTDELIIG I+FKTFDLGGHETARRLW DY TTVDGVV+IVD++D+ RFPEAK+ELD+LLT+++L +VPFLVLGNKID+P A SEE+L++ALGL +TYGKD    G    G RPIELYMCSVI+RMGYADGFKWL+ FL
Sbjct:    4 FSLDWMYSALASLGLYHKNAKILFLGLDNAGKTTLLHMLKENRVQVHVPTLHPNTDELIIGNIKFKTFDLGGHETARRLWADYFTTVDGVVYIVDSIDRGRFPEAKKELDALLTTEELQDVPFLVLGNKIDMPTAASEEELKFALGLGDTYGKDKGPDG---TGTRPIELYMCSVIRRMGYADGFKWLSAFL 192
[Close]
BLAST of NO05G01600 vs. NCBI_GenBank
Match: XP_002287808.1 (arf-type small G protein [Thalassiosira pseudonana CCMP1335] >EED95251.1 arf-type small G protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 315.5 bits (807), Expect = 1.200e-82
Identity = 144/193 (74.61%), Postives = 173/193 (89.64%), Query Frame = 0 
Query:    1 MFLMDWVYSALSYLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDDLANVPFLVLGNKIDVPRAVSEEQLRYALGLQNTYGKDSSGGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 194
            MFL++W Y  L+ LGLYHK+AKILFLGLDNAGKTTLLHMLKENRVQ H PT+HPNTDELI+G+++ KTFDLGGHETARRLW+DY TTVDGVV++VDA+D+ RFPEAKRELD+LLTSD+L +VPFLVLGNKID+P A SEE+L+YALGL +TYGKD+    +K  GVRPIE++MCSV++RMGY DGF+WL+QFL
Sbjct:    1 MFLVNWFYDTLASLGLYHKNAKILFLGLDNAGKTTLLHMLKENRVQAHVPTLHPNTDELIVGQLKLKTFDLGGHETARRLWQDYFTTVDGVVYLVDAIDRGRFPEAKRELDALLTSDELVDVPFLVLGNKIDMPSAASEEELKYALGLLDTYGKDTK--PDKNSGVRPIEVFMCSVVRRMGYKDGFQWLSQFL 191
[Close]
BLAST of NO05G01600 vs. NCBI_GenBank
Match: XP_008870972.1 (hypothetical protein H310_07363 [Aphanomyces invadans] >ETW00837.1 hypothetical protein H310_07363 [Aphanomyces invadans])

HSP 1 Score: 313.5 bits (802), Expect = 4.500e-82
Identity = 140/193 (72.54%), Postives = 173/193 (89.64%), Query Frame = 0 
Query:    1 MFLMDWVYSALSYLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDDLANVPFLVLGNKIDVPRAVSEEQLRYALGLQNTYGKDSSGGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 194
            MF +DW Y  L +LGL+HK+AKILFLGLDNAGKTTLLHMLK++RV VH+PT+HPN++ELIIGK+R +TFDLGGHETAR+LW+DY  TVDGVVF+VDALD++RFPE+KRELD+LL  D+LANVPFLVLGNKID+PRA SE++LR ALGL  TYGK++   G+++  +RPIELYMCSV++RMGYADGF+W+AQFL
Sbjct:    1 MFFLDWFYGILGFLGLHHKNAKILFLGLDNAGKTTLLHMLKDDRVAVHEPTLHPNSEELIIGKLRLRTFDLGGHETARKLWRDYFATVDGVVFLVDALDRDRFPESKRELDTLLGCDELANVPFLVLGNKIDIPRAASEDELRAALGLYETYGKEAR--GDREANIRPIELYMCSVVRRMGYADGFRWMAQFL 191
[Close]
BLAST of NO05G01600 vs. NCBI_GenBank
Match: EJK59511.1 (hypothetical protein THAOC_20252 [Thalassiosira oceanica])

HSP 1 Score: 313.2 bits (801), Expect = 5.800e-82
Identity = 143/193 (74.09%), Postives = 172/193 (89.12%), Query Frame = 0 
Query:    1 MFLMDWVYSALSYLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDDLANVPFLVLGNKIDVPRAVSEEQLRYALGLQNTYGKDSSGGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 194
            MFL++W Y  L+ LGLYHK+AKILFLGLDNAGKTTLLHMLKENRVQ H PT+HPNTDELI+G+++ KTFDLGGHETARRLW+DY TTVDGVV++VDA+D+ RFPEAK+ELD+LLTSD+L +VPFLVLGNKID+P A SEE+L+YALGL +TYGKD+    +K  GVRPIE++MCSV++RMGY DGF WL+QFL
Sbjct:    1 MFLVNWFYDTLASLGLYHKNAKILFLGLDNAGKTTLLHMLKENRVQAHVPTLHPNTDELIVGQLKLKTFDLGGHETARRLWQDYFTTVDGVVYLVDAIDRGRFPEAKKELDALLTSDELTDVPFLVLGNKIDMPSAASEEELKYALGLLDTYGKDTK--PDKNSGVRPIEVFMCSVVRRMGYKDGFLWLSQFL 191
[Close]
BLAST of NO05G01600 vs. NCBI_GenBank
Match: XP_008617643.1 (arf/Sar family, other [Saprolegnia diclina VS20] >EQC29004.1 arf/Sar family, other [Saprolegnia diclina VS20])

HSP 1 Score: 309.7 bits (792), Expect = 6.500e-81
Identity = 139/193 (72.02%), Postives = 171/193 (88.60%), Query Frame = 0 
Query:    1 MFLMDWVYSALSYLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDDLANVPFLVLGNKIDVPRAVSEEQLRYALGLQNTYGKDSSGGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 194
            MF +DW Y  L +LGL+ K+AKILFLGLDNAGKTTLLHMLK++RV VH+PT+HPN++ELIIGK+R +TFDLGGHETAR+LW+DY  TVDGVVF+VDALD++RFPE+KRELD+LL  D+LANVPFLVLGNKID+PRA SE++LR ALGL  TYGK++   G++   +RPIELYMCSV++RMGYADGF+W+AQFL
Sbjct:   19 MFFVDWFYGVLGFLGLHRKNAKILFLGLDNAGKTTLLHMLKDDRVAVHEPTLHPNSEELIIGKLRLRTFDLGGHETARKLWRDYFATVDGVVFLVDALDRDRFPESKRELDTLLGCDELANVPFLVLGNKIDIPRAASEDELRAALGLYETYGKEAR--GDRDANIRPIELYMCSVVRRMGYADGFRWMAQFL 209
[Close]
BLAST of NO05G01600 vs. NCBI_GenBank
Match: XP_012207879.1 (GTP-binding protein SAR1A [Saprolegnia parasitica CBS 223.65] >KDO21432.1 GTP-binding protein SAR1A [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 309.7 bits (792), Expect = 6.500e-81
Identity = 139/193 (72.02%), Postives = 171/193 (88.60%), Query Frame = 0 
Query:    1 MFLMDWVYSALSYLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDDLANVPFLVLGNKIDVPRAVSEEQLRYALGLQNTYGKDSSGGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 194
            MF +DW Y  L +LGL+ K+AKILFLGLDNAGKTTLLHMLK++RV VH+PT+HPN++ELIIGK+R +TFDLGGHETAR+LW+DY  TVDGVVF+VDALD++RFPE+KRELD+LL  D+LANVPFLVLGNKID+PRA SE++LR ALGL  TYGK++   G++   +RPIELYMCSV++RMGYADGF+W+AQFL
Sbjct:    1 MFFVDWFYGVLGFLGLHRKNAKILFLGLDNAGKTTLLHMLKDDRVAVHEPTLHPNSEELIIGKLRLRTFDLGGHETARKLWRDYFATVDGVVFLVDALDRDRFPESKRELDTLLGCDELANVPFLVLGNKIDIPRAASEDELRAALGLYETYGKEAR--GDRDANIRPIELYMCSVVRRMGYADGFRWMAQFL 191
[Close]
BLAST of NO05G01600 vs. NCBI_GenBank
Match: CCA15819.1 (protein kinase putative [Albugo laibachii Nc14])

HSP 1 Score: 307.8 bits (787), Expect = 2.500e-80
Identity = 143/193 (74.09%), Postives = 166/193 (86.01%), Query Frame = 0 
Query:    1 MFLMDWVYSALSYLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDDLANVPFLVLGNKIDVPRAVSEEQLRYALGLQNTYGKDSSGGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 194
            MF+ DW Y+ L YLGLYHK+AKILFLGLDNAGKTTLLHMLK++RV VHQPT+HPN +ELIIGK+  +TFDLGGHETARRLW+DY  TVD VVF+VDALD+ERFPE+KRELD+LL  D+L +VPFLVLGNKIDV RA SEE+LR ALGL  TYGK +   G++   +RPIELYMCSV++RMGYADGF WLAQFL
Sbjct:  323 MFVFDWFYNVLGYLGLYHKNAKILFLGLDNAGKTTLLHMLKDDRVAVHQPTLHPNFEELIIGKLCLRTFDLGGHETARRLWRDYFATVDAVVFVVDALDRERFPESKRELDTLLGYDELTSVPFLVLGNKIDVARAASEEELRRALGLHETYGKQAR--GDRDGSIRPIELYMCSVVRRMGYADGFSWLAQFL 513
[Close]
BLAST of NO05G01600 vs. NCBI_GenBank
Match: XP_009826101.1 (hypothetical protein H257_03626 [Aphanomyces astaci] >ETV84409.1 hypothetical protein H257_03626 [Aphanomyces astaci])

HSP 1 Score: 307.4 bits (786), Expect = 3.200e-80
Identity = 137/193 (70.98%), Postives = 170/193 (88.08%), Query Frame = 0 
Query:    1 MFLMDWVYSALSYLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDDLANVPFLVLGNKIDVPRAVSEEQLRYALGLQNTYGKDSSGGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 194
            MF +DW Y  L +LGL+HK+AKILFLGLDNAGKTTLLHMLK++RV VH+PT+HPN++ELIIGK+R +TFDLGGHETAR+LW+DY  TVDGVVF+VDALD++RFPE+KRELD+LL  D+LA+VPFLVLGNKID+PRA SE++LR ALGL  TYGK++   G +   +RPIELYMCSV++RMGYADGF+W++ FL
Sbjct:    1 MFFLDWFYGVLGFLGLHHKNAKILFLGLDNAGKTTLLHMLKDDRVAVHEPTLHPNSEELIIGKLRLRTFDLGGHETARKLWRDYFATVDGVVFLVDALDRDRFPESKRELDTLLGCDELASVPFLVLGNKIDIPRAASEDELRAALGLYETYGKETR--GNRDANIRPIELYMCSVVRRMGYADGFRWMSDFL 191
[Close]
BLAST of NO05G01600 vs. NCBI_GenBank
Match: XP_009037518.1 (hypothetical protein AURANDRAFT_59061 [Aureococcus anophagefferens] >EGB07512.1 hypothetical protein AURANDRAFT_59061 [Aureococcus anophagefferens])

HSP 1 Score: 300.1 bits (767), Expect = 5.100e-78
Identity = 144/193 (74.61%), Postives = 164/193 (84.97%), Query Frame = 0 
Query:    1 MFLMDWVYSALSYLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDDLANVPFLVLGNKIDVPRAVSEEQLRYALGLQNTYGKDSS-GGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQF 193
            M+L DWV++ L+ LG    SAKILFLGLDNAGKTTLLHMLKENRVQ+HQPT+HPN DELIIG IRFKTFDLGGHETARRLWKDY TTVDGVV++VDALD+ RFPEAKRELD LLT D+LA VPFLVLGNKID   A SE+ LRYALGL  T+GKD++    +    +RPIEL+MCSVI++MGYADGF+WLAQF
Sbjct:    1 MWLFDWVFNVLANLGASAGSAKILFLGLDNAGKTTLLHMLKENRVQIHQPTLHPNQDELIIGNIRFKTFDLGGHETARRLWKDYFTTVDGVVYMVDALDRGRFPEAKRELDYLLTCDELAAVPFLVLGNKIDAHSAASEDDLRYALGLFETFGKDTARRNNDDDNKIRPIELFMCSVIRKMGYADGFRWLAQF 193
[Close]
BLAST of NO05G01600 vs. NCBI_GenBank
Match: OQR87948.1 (GTP-binding protein SAR1 [Achlya hypogyna])

HSP 1 Score: 291.2 bits (744), Expect = 2.400e-75
Identity = 132/182 (72.53%), Postives = 163/182 (89.56%), Query Frame = 0 
Query:   12 SYLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDDLANVPFLVLGNKIDVPRAVSEEQLRYALGLQNTYGKDSSGGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 194
            S + L+ K+AKILFLGLDNAGKTTLLHMLK++RV VH+PT+HPN++ELIIGK+R +TFDLGGHETAR+LW+DY  TVDGVVF+VDALD++RFPE+KRELD+LL  D+LANVPFLVLGNKID+PRA SE++LR ALGL  TYGK++   G++   +RPIELYMCSV++RMGYADGF+W+AQFL
Sbjct:   32 SSVRLHRKNAKILFLGLDNAGKTTLLHMLKDDRVAVHEPTLHPNSEELIIGKLRLRTFDLGGHETARKLWRDYFATVDGVVFLVDALDRDRFPESKRELDTLLGCDELANVPFLVLGNKIDIPRAASEDELRAALGLYETYGKEAR--GDRDANIRPIELYMCSVVRRMGYADGFRWMAQFL 211
The following BLAST results are available for this feature:
BLAST of NO05G01600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OEU18946.16.900e-8377.08small GTP-binding protein sar1 [Fragilariopsis cyl... [more]
XP_002287808.11.200e-8274.61arf-type small G protein [Thalassiosira pseudonana... [more]
XP_008870972.14.500e-8272.54hypothetical protein H310_07363 [Aphanomyces invad... [more]
EJK59511.15.800e-8274.09hypothetical protein THAOC_20252 [Thalassiosira oc... [more]
XP_008617643.16.500e-8172.02arf/Sar family, other [Saprolegnia diclina VS20] >... [more]
XP_012207879.16.500e-8172.02GTP-binding protein SAR1A [Saprolegnia parasitica ... [more]
CCA15819.12.500e-8074.09protein kinase putative [Albugo laibachii Nc14][more]
XP_009826101.13.200e-8070.98hypothetical protein H257_03626 [Aphanomyces astac... [more]
XP_009037518.15.100e-7874.61hypothetical protein AURANDRAFT_59061 [Aureococcus... [more]
OQR87948.12.400e-7572.53GTP-binding protein SAR1 [Achlya hypogyna][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003711NSK003711Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01600.1NO05G01600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583926gene_2948Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g84gene2341Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01600.1NO05G01600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01600 ID=NO05G01600|Name=NO05G01600|organism=Nannochloropsis oceanica|type=gene|length=997bp
ATGTTCCTCATGGACTGGGTTTACAGTGCTCTCTCCTACCTAGgtacgct
ttctacgacttccttatcttgttatcatgcaggagagggtgaagcgtaga
aaggctgcgactcaaggggcgttaatgggggccacgctcttcgctgtgtc
ccttcgttgcccatctcctgcgctggcctttttcccacgccttcctcttg
gctagccctcctacttactcaccctttcttcattttcttcatttcttcat
ctaattagGTTTGTACCACAAGAGTGCCAAAATTCTGTTTTTGGGGCTTG
ACAATGCGGGGAAGACAACCTTGCTACATATGCTCAAGGAAAACCGGGTG
CAAGTCCATCAGCCTACCATCCACCCCAACACGGACGAGCTCATTATCGG
AAAGATTCGGTTTAAAACATTTGACTTGGGCGGGCACGAGACGGCACGTC
GGCTATGGAAGGACTACCTGACGACGGTGGATGGGGTAGTGTTTATAGTG
GATGCCTTGGACCAGGAGCGCTTTCCCGAGGCCAAGCGGGAGTTGGATgt
aagtggcccgtagataggggagaaatgtgaagatggaggagtgtgcgtgt
gccagagacaatattctcgtttgtcggatttgtgggcgtctcggggtggg
gacgggggggaaaggggttgcatcgtgttcatgcattcgagtgattctca
ccttttttttccttccctcctggcatcctcccccactgaccacgacagAG
CCTCCTCACAAGCGATGATCTCGCCAACGTACCTTTCCTAGTTCTTGGAA
ATAAGATCGACGTTCCGCGGGCCGTGTCAGAGGAACAGCTGCGTTACGCC
CTAGGTCTGCAAAACACCTATGGGAAAGACTCGTCCGGCGGGGGAGAGAA
GCAACCGGGCGTCCGGCCCATTGAGCTGTACATGTGCTCCGTGATTAAGA
GGATGGGCTACGCGGATGGGTTCAAATGGTTGGCACAGTTCCTGTAA
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protein sequence of NO05G01600.1

>NO05G01600.1-protein ID=NO05G01600.1-protein|Name=NO05G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MFLMDWVYSALSYLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQP
TIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQ
ERFPEAKRELDSLLTSDDLANVPFLVLGNKIDVPRAVSEEQLRYALGLQN
TYGKDSSGGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL*
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Synonyms
Publications