NO05G01600.1, NO05G01600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01600.1
Unique NameNO05G01600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length582
Alignment locationchr5:445073..446069 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:445073..446069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01600.1 vs.
Match: EWM28173.1 (gtp-binding protein sar1 [Nannochloropsis gaditana])

HSP 1 Score: 382.5 bits (981), Expect = 7.800e-103
Identity = 186/193 (96.37%), Postives = 191/193 (98.96%), Query Frame = 0 
Query:    1 MFLMDWVYSALSYLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDDLANVPFLVLGNKIDVPRAVSEEQLRYALGLQNTYGKDSSGGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 194
            MFL+DWVYSAL+ LGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSD+LA+VPFLVLGNKIDVPRAVSEEQLRYALG+QNTYGKDSS GGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL
Sbjct:    1 MFLLDWVYSALASLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSS-GGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 192
The following BLAST results are available for this feature:
BLAST of NO05G01600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28173.17.800e-10396.37gtp-binding protein sar1 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01600NO05G01600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01600.1NO05G01600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01600.1.cds1NO05G01600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01600.1.cds2NO05G01600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01600.1.cds3NO05G01600.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01600.1 ID=NO05G01600.1|Name=NO05G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=582bp
ATGTTCCTCATGGACTGGGTTTACAGTGCTCTCTCCTACCTAGGTTTGTA
CCACAAGAGTGCCAAAATTCTGTTTTTGGGGCTTGACAATGCGGGGAAGA
CAACCTTGCTACATATGCTCAAGGAAAACCGGGTGCAAGTCCATCAGCCT
ACCATCCACCCCAACACGGACGAGCTCATTATCGGAAAGATTCGGTTTAA
AACATTTGACTTGGGCGGGCACGAGACGGCACGTCGGCTATGGAAGGACT
ACCTGACGACGGTGGATGGGGTAGTGTTTATAGTGGATGCCTTGGACCAG
GAGCGCTTTCCCGAGGCCAAGCGGGAGTTGGATAGCCTCCTCACAAGCGA
TGATCTCGCCAACGTACCTTTCCTAGTTCTTGGAAATAAGATCGACGTTC
CGCGGGCCGTGTCAGAGGAACAGCTGCGTTACGCCCTAGGTCTGCAAAAC
ACCTATGGGAAAGACTCGTCCGGCGGGGGAGAGAAGCAACCGGGCGTCCG
GCCCATTGAGCTGTACATGTGCTCCGTGATTAAGAGGATGGGCTACGCGG
ATGGGTTCAAATGGTTGGCACAGTTCCTGTAA
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protein sequence of NO05G01600.1

>NO05G01600.1-protein ID=NO05G01600.1-protein|Name=NO05G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MFLMDWVYSALSYLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQP
TIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQ
ERFPEAKRELDSLLTSDDLANVPFLVLGNKIDVPRAVSEEQLRYALGLQN
TYGKDSSGGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL*
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mRNA from alignment at chr5:445073..446069-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01600.1 ID=NO05G01600.1|Name=NO05G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=997bp|location=Sequence derived from alignment at chr5:445073..446069- (Nannochloropsis oceanica)
ATGTTCCTCATGGACTGGGTTTACAGTGCTCTCTCCTACCTAGGTACGCT
TTCTACGACTTCCTTATCTTGTTATCATGCAGGAGAGGGTGAAGCGTAGA
AAGGCTGCGACTCAAGGGGCGTTAATGGGGGCCACGCTCTTCGCTGTGTC
CCTTCGTTGCCCATCTCCTGCGCTGGCCTTTTTCCCACGCCTTCCTCTTG
GCTAGCCCTCCTACTTACTCACCCTTTCTTCATTTTCTTCATTTCTTCAT
CTAATTAGGTTTGTACCACAAGAGTGCCAAAATTCTGTTTTTGGGGCTTG
ACAATGCGGGGAAGACAACCTTGCTACATATGCTCAAGGAAAACCGGGTG
CAAGTCCATCAGCCTACCATCCACCCCAACACGGACGAGCTCATTATCGG
AAAGATTCGGTTTAAAACATTTGACTTGGGCGGGCACGAGACGGCACGTC
GGCTATGGAAGGACTACCTGACGACGGTGGATGGGGTAGTGTTTATAGTG
GATGCCTTGGACCAGGAGCGCTTTCCCGAGGCCAAGCGGGAGTTGGATGT
AAGTGGCCCGTAGATAGGGGAGAAATGTGAAGATGGAGGAGTGTGCGTGT
GCCAGAGACAATATTCTCGTTTGTCGGATTTGTGGGCGTCTCGGGGTGGG
GACGGGGGGGAAAGGGGTTGCATCGTGTTCATGCATTCGAGTGATTCTCA
CCTTTTTTTTCCTTCCCTCCTGGCATCCTCCCCCACTGACCACGACAGAG
CCTCCTCACAAGCGATGATCTCGCCAACGTACCTTTCCTAGTTCTTGGAA
ATAAGATCGACGTTCCGCGGGCCGTGTCAGAGGAACAGCTGCGTTACGCC
CTAGGTCTGCAAAACACCTATGGGAAAGACTCGTCCGGCGGGGGAGAGAA
GCAACCGGGCGTCCGGCCCATTGAGCTGTACATGTGCTCCGTGATTAAGA
GGATGGGCTACGCGGATGGGTTCAAATGGTTGGCACAGTTCCTGTAA
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Coding sequence (CDS) from alignment at chr5:445073..446069-

>NO05G01600.1 ID=NO05G01600.1|Name=NO05G01600.1|organism=Nannochloropsis oceanica|type=CDS|length=582bp|location=Sequence derived from alignment at chr5:445073..446069- (Nannochloropsis oceanica)
ATGTTCCTCATGGACTGGGTTTACAGTGCTCTCTCCTACCTAGGTTTGTA
CCACAAGAGTGCCAAAATTCTGTTTTTGGGGCTTGACAATGCGGGGAAGA
CAACCTTGCTACATATGCTCAAGGAAAACCGGGTGCAAGTCCATCAGCCT
ACCATCCACCCCAACACGGACGAGCTCATTATCGGAAAGATTCGGTTTAA
AACATTTGACTTGGGCGGGCACGAGACGGCACGTCGGCTATGGAAGGACT
ACCTGACGACGGTGGATGGGGTAGTGTTTATAGTGGATGCCTTGGACCAG
GAGCGCTTTCCCGAGGCCAAGCGGGAGTTGGATAGCCTCCTCACAAGCGA
TGATCTCGCCAACGTACCTTTCCTAGTTCTTGGAAATAAGATCGACGTTC
CGCGGGCCGTGTCAGAGGAACAGCTGCGTTACGCCCTAGGTCTGCAAAAC
ACCTATGGGAAAGACTCGTCCGGCGGGGGAGAGAAGCAACCGGGCGTCCG
GCCCATTGAGCTGTACATGTGCTCCGTGATTAAGAGGATGGGCTACGCGG
ATGGGTTCAAATGGTTGGCACAGTTCCTGTAA
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Synonyms
Publications