NO05G01110, NO05G01110 (gene) Nannochloropsis oceanica

Overview
NameNO05G01110
Unique NameNO05G01110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length741
Alignment locationchr5:326501..327241 +

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Properties
Property NameValue
Description50s ribosomal protein l20
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:326501..327241 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0019843rRNA binding
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR035566Ribosomal_protein_L20_C
IPR005813Ribosomal_L20
Homology
BLAST of NO05G01110 vs. NCBI_GenBank
Match: WP_024081824.1 (50S ribosomal protein L20 [Magnetospirillum gryphiswaldense] >CAM76289.1 50S ribosomal protein L20 [Magnetospirillum gryphiswaldense MSR-1] >CDL00899.1 50S ribosomal subunit protein L20 [Magnetospirillum gryphiswaldense MSR-1 v2] >AVM75281.1 50S ribosomal protein L20 [Magnetospirillum gryphiswaldense MSR-1] >AVM79184.1 50S ribosomal protein L20 [Magnetospirillum gryphiswaldense])

HSP 1 Score: 141.0 bits (354), Expect = 3.300e-30
Identity = 68/106 (64.15%), Postives = 90/106 (84.91%), Query Frame = 0
Query:   50 RGLANH-RHKKIIKMAKGYRGRTN-CFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVE 154
            RG+  H RHKKI+K+AKG+RGR++ CFR+A+++VEKAL+YAYRDR+ KKR FR++WIQRI A  +QYGM YSRF+ GLK+A I L+RKVLAD+A  EP SFK++V+
Sbjct:    6 RGVTTHARHKKILKLAKGFRGRSSTCFRVAIEKVEKALRYAYRDRRAKKRNFRALWIQRINAGTRQYGMPYSRFMNGLKKAGIVLDRKVLADIAAREPESFKSLVQ 111          
BLAST of NO05G01110 vs. NCBI_GenBank
Match: WP_008616781.1 (50S ribosomal protein L20 [Magnetospirillum caucaseum] >EME70150.1 50S ribosomal protein L20 [Magnetospirillum caucaseum])

HSP 1 Score: 140.6 bits (353), Expect = 4.300e-30
Identity = 67/110 (60.91%), Postives = 92/110 (83.64%), Query Frame = 0
Query:   50 RGLANH-RHKKIIKMAKGYRGRTN-CFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVRS 158
            RG+  H RHKKI+K+AKGYRGR++ CFR+A+Q+VEKAL+YAYRDR+ KKR FR++WIQRI A  + YG+ YSRF+ GLK+A I L+RKVL+D+A+ EP +FK++VE  ++
Sbjct:    6 RGVTTHARHKKILKLAKGYRGRSSTCFRVAIQKVEKALRYAYRDRRAKKRNFRALWIQRINAGSRAYGLPYSRFMDGLKKAGIALDRKVLSDIAIREPEAFKSLVEKAQA 115          
BLAST of NO05G01110 vs. NCBI_GenBank
Match: WP_037459051.1 (50S ribosomal protein L20 [Skermanella stibiiresistens] >EWY37347.1 50S ribosomal protein L20 [Skermanella stibiiresistens SB22])

HSP 1 Score: 140.6 bits (353), Expect = 4.300e-30
Identity = 67/110 (60.91%), Postives = 92/110 (83.64%), Query Frame = 0
Query:   50 RGLANH-RHKKIIKMAKGYRGRTN-CFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVRS 158
            RG+  H RH+KI+K+AKGYRGR++ CFR+A+Q+VEKAL+YAYRDR+ KKREFRS+WIQRI A V+QYG+ YSRF+ G+KRA + ++RKVLA +A  EP +FK +V+  ++
Sbjct:    6 RGVTTHARHRKILKLAKGYRGRSSKCFRIAIQKVEKALRYAYRDRRNKKREFRSLWIQRINAGVRQYGLTYSRFMNGMKRAGVDVDRKVLASLAAHEPDAFKVLVDKAQA 115          
BLAST of NO05G01110 vs. NCBI_GenBank
Match: WP_068491852.1 (50S ribosomal protein L20 [Magnetospirillum marisnigri] >OAN51113.1 50S ribosomal protein L20 [Magnetospirillum marisnigri])

HSP 1 Score: 140.6 bits (353), Expect = 4.300e-30
Identity = 66/110 (60.00%), Postives = 93/110 (84.55%), Query Frame = 0
Query:   50 RGLANH-RHKKIIKMAKGYRGRTN-CFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVRS 158
            RG+  H RHKKI+K+AKGYRGR++ CFR+A+Q+VEKAL+YAYRDR+ KKR FR++WIQRI A  + +G+ YSRF+ GLK+ANI L+RKVL+D+A+ EP +FK++V+  ++
Sbjct:    6 RGVTTHARHKKILKLAKGYRGRSSTCFRVAIQKVEKALRYAYRDRRAKKRNFRALWIQRINAGARAHGLPYSRFMDGLKKANIALDRKVLSDIAIREPEAFKSLVDKAQA 115          
BLAST of NO05G01110 vs. NCBI_GenBank
Match: OJX71359.1 (50S ribosomal protein L20 [Magnetospirillum sp. 64-120])

HSP 1 Score: 140.6 bits (353), Expect = 4.300e-30
Identity = 68/106 (64.15%), Postives = 89/106 (83.96%), Query Frame = 0
Query:   50 RGLANH-RHKKIIKMAKGYRGR-TNCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVE 154
            RG+  H RHKKI+K+AKGYRGR + CFR+A+++VEKAL+YAYRDR+ KKR FR++WIQRI A  +QYGM YSRF+ GLK+A I L+RKVLAD+A  EP +FK++V+
Sbjct:    6 RGVTTHARHKKILKLAKGYRGRASTCFRVAIEKVEKALRYAYRDRRAKKRNFRALWIQRINAGTRQYGMPYSRFMNGLKKAGIVLDRKVLADIAAREPDAFKSLVQ 111          
BLAST of NO05G01110 vs. NCBI_GenBank
Match: PPR49034.1 (50S ribosomal protein L20 [Alphaproteobacteria bacterium MarineAlpha6_Bin1])

HSP 1 Score: 140.6 bits (353), Expect = 4.300e-30
Identity = 65/105 (61.90%), Postives = 89/105 (84.76%), Query Frame = 0
Query:   53 ANHRHKKIIKMAKGYRGRT-NCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVR 157
            A  RHKKI+KMAKGYRGR+ N FR+A+QRVEKALQYAYRDR+ KKR FR++WIQRI A  +++GM+YS+FI G+K+A I ++RK+L+D+A+  P +FK++VE +R
Sbjct:   10 ARARHKKILKMAKGYRGRSKNVFRVAIQRVEKALQYAYRDRRTKKRNFRALWIQRINAGTREHGMSYSQFIHGIKKAEIEIDRKILSDIALNNPVTFKSIVEKIR 114          
BLAST of NO05G01110 vs. NCBI_GenBank
Match: WP_009869562.1 (MULTISPECIES: 50S ribosomal protein L20 [Magnetospirillum] >Q2VYY8.1 RecName: Full=50S ribosomal protein L20 >BAE53187.1 Ribosomal protein L20 [Magnetospirillum magneticum AMB-1] >KIL97628.1 LSU ribosomal protein L20p [Magnetospirillum magnetotacticum MS-1])

HSP 1 Score: 140.2 bits (352), Expect = 5.600e-30
Identity = 67/110 (60.91%), Postives = 92/110 (83.64%), Query Frame = 0
Query:   50 RGLANH-RHKKIIKMAKGYRGRTN-CFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVRS 158
            RG+  H RHKKI+K+AKGYRGR++ CFR+A+Q+VEKAL+YAYRDR+ KKR FR++WIQRI A  + YG+ YSRF+ GLK+A I L+RKVL+D+A+ EP +FK++VE  ++
Sbjct:    6 RGVTTHARHKKILKLAKGYRGRSSTCFRVAIQKVEKALRYAYRDRRAKKRNFRALWIQRINAGSRAYGLPYSRFMDGLKKAGIALDRKVLSDIAIREPDAFKSLVEKAQA 115          
BLAST of NO05G01110 vs. NCBI_GenBank
Match: WP_029010942.1 (50S ribosomal protein L20 [Azospirillum halopraeferens])

HSP 1 Score: 139.8 bits (351), Expect = 7.300e-30
Identity = 68/109 (62.39%), Postives = 90/109 (82.57%), Query Frame = 0
Query:   50 RGLANH-RHKKIIKMAKGYRGR-TNCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVR 157
            RG+  H RH+KI+K+AKGYRGR + CFR+A+++VEKAL+YAYRDR+ KKR+FR +WIQRI A V+Q+G+ YSRFI G+K A I ++RKVLAD+A  EP SFKA+V+  R
Sbjct:    6 RGVTTHARHRKILKLAKGYRGRNSTCFRIAIEKVEKALRYAYRDRRNKKRDFRGLWIQRINAGVRQHGLTYSRFINGIKLAGIEMDRKVLADLAAREPDSFKALVDRAR 114          
BLAST of NO05G01110 vs. NCBI_GenBank
Match: WP_045912119.1 (50S ribosomal protein L20 [Orientia tsutsugamushi] >KJV57603.1 ribosomal protein L20 [Orientia tsutsugamushi str. Karp] >KJV88894.1 ribosomal protein L20 [Orientia tsutsugamushi str. UT76] >KJV97200.1 ribosomal protein L20 [Orientia tsutsugamushi str. UT76])

HSP 1 Score: 139.8 bits (351), Expect = 7.300e-30
Identity = 68/103 (66.02%), Postives = 88/103 (85.44%), Query Frame = 0
Query:   55 HRHKKIIKMAKGYRGRT-NCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVR 157
            +RHKKI+K+AKGYRGR  NCFR+A+Q+VEKALQY+YRDR+ +KR+FR++WIQRI AAV+QY M YS+FI GLKRANIT++RKV+AD+AV    SF  +VE  +
Sbjct:   12 NRHKKILKLAKGYRGRAKNCFRIAIQKVEKALQYSYRDRRNRKRQFRALWIQRINAAVRQYDMTYSQFINGLKRANITVDRKVMADLAVHNADSFLHLVELTK 114          
BLAST of NO05G01110 vs. NCBI_GenBank
Match: OJW47248.1 (50S ribosomal protein L20 [Alphaproteobacteria bacterium 41-28])

HSP 1 Score: 139.0 bits (349), Expect = 1.200e-29
Identity = 66/106 (62.26%), Postives = 89/106 (83.96%), Query Frame = 0
Query:   50 RGLANH-RHKKIIKMAKGYRGRT-NCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVE 154
            RG   H RHKK++K+AKGYRGR+ NCFR+A+QRVEKALQYAYRDR+ +KR+FR +WIQRI A  +++G+ YS+FI GL +A I ++RKVLAD+AV EP +FK++V+
Sbjct:    6 RGKTTHARHKKVLKLAKGYRGRSKNCFRIAIQRVEKALQYAYRDRRNRKRDFRGLWIQRINAGTREHGLTYSKFINGLTKAGIDIDRKVLADLAVHEPAAFKSIVD 111          
The following BLAST results are available for this feature:
BLAST of NO05G01110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_024081824.13.300e-3064.1550S ribosomal protein L20 [Magnetospirillum gryphi... [more]
WP_008616781.14.300e-3060.9150S ribosomal protein L20 [Magnetospirillum caucas... [more]
WP_037459051.14.300e-3060.9150S ribosomal protein L20 [Skermanella stibiiresis... [more]
WP_068491852.14.300e-3060.0050S ribosomal protein L20 [Magnetospirillum marisn... [more]
OJX71359.14.300e-3064.1550S ribosomal protein L20 [Magnetospirillum sp. 64... [more]
PPR49034.14.300e-3061.9050S ribosomal protein L20 [Alphaproteobacteria bac... [more]
WP_009869562.15.600e-3060.91MULTISPECIES: 50S ribosomal protein L20 [Magnetosp... [more]
WP_029010942.17.300e-3062.3950S ribosomal protein L20 [Azospirillum halopraefe... [more]
WP_045912119.17.300e-3066.0250S ribosomal protein L20 [Orientia tsutsugamushi]... [more]
OJW47248.11.200e-2962.2650S ribosomal protein L20 [Alphaproteobacteria bac... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003757NSK003757Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01110.1NO05G01110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583749gene_2902Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g36gene2297Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01110.1NO05G01110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01110 ID=NO05G01110|Name=NO05G01110|organism=Nannochloropsis oceanica|type=gene|length=741bp
GTTCACCGTCGCCATCGCCCACCAGCTCAAGCGGATGAGCGATAGCGAGT
GGCCTTCATATCCTGCCCTTATGACTATACTCACGCCACACCACAGCAAT
AGTTCCATGGCTACCTCTTGTTCTTGGCTTTAACATATTATCGCACGCTC
TCTCCGTTCGCTAACCACCATCCTCCCCTTTTCCCCGAGAAGACGCATCA
TCACCATGGCCCCGTCTTGGCTGGGCATCCTCTCCTTTCGACGCGCCACC
GCGGCCCTCTCTGTCCATGCACAGATCCTCCCCAGCATCACTATCAACAC
AAGCACCCTTTCCTTGCTGTCTCCGCTGTCCGCCCCATTCATGCAGCAGT
CCCGTGGGCTTGCCAATCACCGGCACAAGAAAATCATCAAAATGGCGAAG
GGCTACCGTGGCCGTACCAACTGCTTCCGCATGGCTGTGCAACGCGTCGA
GAAGGCATTACAATACGCCTATCGGGACCGGAAGGTGAAGAAGCGCGAGT
TCCGCTCCATATGGATTCAGCGCATTGGCGCCGCCGTCCAACAGTACGGC
ATGAACTACTCAAGATTCATCCCTGGGTTGAAACGTGCCAACATTACGCT
CAACCGCAAAGTGCTTGCCGATATGGCTGTGACAGAGCCGTACTCTTTCA
AGGCAGTGGTGGAGACGGTGCGTAGCCAGTGATGAGAAGTGAAAGAGGGG
GTGTACAAAAGAAAGAAAAAAATGGCTACAAGACATGAAGA
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protein sequence of NO05G01110.1

>NO05G01110.1-protein ID=NO05G01110.1-protein|Name=NO05G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MAPSWLGILSFRRATAALSVHAQILPSITINTSTLSLLSPLSAPFMQQSR
GLANHRHKKIIKMAKGYRGRTNCFRMAVQRVEKALQYAYRDRKVKKREFR
SIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKA
VVETVRSQ*
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Synonyms
Publications