NO05G01110, NO05G01110 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G01110 vs. NCBI_GenBank
Match: WP_024081824.1 (50S ribosomal protein L20 [Magnetospirillum gryphiswaldense] >CAM76289.1 50S ribosomal protein L20 [Magnetospirillum gryphiswaldense MSR-1] >CDL00899.1 50S ribosomal subunit protein L20 [Magnetospirillum gryphiswaldense MSR-1 v2] >AVM75281.1 50S ribosomal protein L20 [Magnetospirillum gryphiswaldense MSR-1] >AVM79184.1 50S ribosomal protein L20 [Magnetospirillum gryphiswaldense]) HSP 1 Score: 141.0 bits (354), Expect = 3.300e-30 Identity = 68/106 (64.15%), Postives = 90/106 (84.91%), Query Frame = 0 Query: 50 RGLANH-RHKKIIKMAKGYRGRTN-CFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVE 154 RG+ H RHKKI+K+AKG+RGR++ CFR+A+++VEKAL+YAYRDR+ KKR FR++WIQRI A +QYGM YSRF+ GLK+A I L+RKVLAD+A EP SFK++V+ Sbjct: 6 RGVTTHARHKKILKLAKGFRGRSSTCFRVAIEKVEKALRYAYRDRRAKKRNFRALWIQRINAGTRQYGMPYSRFMNGLKKAGIVLDRKVLADIAAREPESFKSLVQ 111
BLAST of NO05G01110 vs. NCBI_GenBank
Match: WP_008616781.1 (50S ribosomal protein L20 [Magnetospirillum caucaseum] >EME70150.1 50S ribosomal protein L20 [Magnetospirillum caucaseum]) HSP 1 Score: 140.6 bits (353), Expect = 4.300e-30 Identity = 67/110 (60.91%), Postives = 92/110 (83.64%), Query Frame = 0 Query: 50 RGLANH-RHKKIIKMAKGYRGRTN-CFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVRS 158 RG+ H RHKKI+K+AKGYRGR++ CFR+A+Q+VEKAL+YAYRDR+ KKR FR++WIQRI A + YG+ YSRF+ GLK+A I L+RKVL+D+A+ EP +FK++VE ++ Sbjct: 6 RGVTTHARHKKILKLAKGYRGRSSTCFRVAIQKVEKALRYAYRDRRAKKRNFRALWIQRINAGSRAYGLPYSRFMDGLKKAGIALDRKVLSDIAIREPEAFKSLVEKAQA 115
BLAST of NO05G01110 vs. NCBI_GenBank
Match: WP_037459051.1 (50S ribosomal protein L20 [Skermanella stibiiresistens] >EWY37347.1 50S ribosomal protein L20 [Skermanella stibiiresistens SB22]) HSP 1 Score: 140.6 bits (353), Expect = 4.300e-30 Identity = 67/110 (60.91%), Postives = 92/110 (83.64%), Query Frame = 0 Query: 50 RGLANH-RHKKIIKMAKGYRGRTN-CFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVRS 158 RG+ H RH+KI+K+AKGYRGR++ CFR+A+Q+VEKAL+YAYRDR+ KKREFRS+WIQRI A V+QYG+ YSRF+ G+KRA + ++RKVLA +A EP +FK +V+ ++ Sbjct: 6 RGVTTHARHRKILKLAKGYRGRSSKCFRIAIQKVEKALRYAYRDRRNKKREFRSLWIQRINAGVRQYGLTYSRFMNGMKRAGVDVDRKVLASLAAHEPDAFKVLVDKAQA 115
BLAST of NO05G01110 vs. NCBI_GenBank
Match: WP_068491852.1 (50S ribosomal protein L20 [Magnetospirillum marisnigri] >OAN51113.1 50S ribosomal protein L20 [Magnetospirillum marisnigri]) HSP 1 Score: 140.6 bits (353), Expect = 4.300e-30 Identity = 66/110 (60.00%), Postives = 93/110 (84.55%), Query Frame = 0 Query: 50 RGLANH-RHKKIIKMAKGYRGRTN-CFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVRS 158 RG+ H RHKKI+K+AKGYRGR++ CFR+A+Q+VEKAL+YAYRDR+ KKR FR++WIQRI A + +G+ YSRF+ GLK+ANI L+RKVL+D+A+ EP +FK++V+ ++ Sbjct: 6 RGVTTHARHKKILKLAKGYRGRSSTCFRVAIQKVEKALRYAYRDRRAKKRNFRALWIQRINAGARAHGLPYSRFMDGLKKANIALDRKVLSDIAIREPEAFKSLVDKAQA 115
BLAST of NO05G01110 vs. NCBI_GenBank
Match: OJX71359.1 (50S ribosomal protein L20 [Magnetospirillum sp. 64-120]) HSP 1 Score: 140.6 bits (353), Expect = 4.300e-30 Identity = 68/106 (64.15%), Postives = 89/106 (83.96%), Query Frame = 0 Query: 50 RGLANH-RHKKIIKMAKGYRGR-TNCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVE 154 RG+ H RHKKI+K+AKGYRGR + CFR+A+++VEKAL+YAYRDR+ KKR FR++WIQRI A +QYGM YSRF+ GLK+A I L+RKVLAD+A EP +FK++V+ Sbjct: 6 RGVTTHARHKKILKLAKGYRGRASTCFRVAIEKVEKALRYAYRDRRAKKRNFRALWIQRINAGTRQYGMPYSRFMNGLKKAGIVLDRKVLADIAAREPDAFKSLVQ 111
BLAST of NO05G01110 vs. NCBI_GenBank
Match: PPR49034.1 (50S ribosomal protein L20 [Alphaproteobacteria bacterium MarineAlpha6_Bin1]) HSP 1 Score: 140.6 bits (353), Expect = 4.300e-30 Identity = 65/105 (61.90%), Postives = 89/105 (84.76%), Query Frame = 0 Query: 53 ANHRHKKIIKMAKGYRGRT-NCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVR 157 A RHKKI+KMAKGYRGR+ N FR+A+QRVEKALQYAYRDR+ KKR FR++WIQRI A +++GM+YS+FI G+K+A I ++RK+L+D+A+ P +FK++VE +R Sbjct: 10 ARARHKKILKMAKGYRGRSKNVFRVAIQRVEKALQYAYRDRRTKKRNFRALWIQRINAGTREHGMSYSQFIHGIKKAEIEIDRKILSDIALNNPVTFKSIVEKIR 114
BLAST of NO05G01110 vs. NCBI_GenBank
Match: WP_009869562.1 (MULTISPECIES: 50S ribosomal protein L20 [Magnetospirillum] >Q2VYY8.1 RecName: Full=50S ribosomal protein L20 >BAE53187.1 Ribosomal protein L20 [Magnetospirillum magneticum AMB-1] >KIL97628.1 LSU ribosomal protein L20p [Magnetospirillum magnetotacticum MS-1]) HSP 1 Score: 140.2 bits (352), Expect = 5.600e-30 Identity = 67/110 (60.91%), Postives = 92/110 (83.64%), Query Frame = 0 Query: 50 RGLANH-RHKKIIKMAKGYRGRTN-CFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVRS 158 RG+ H RHKKI+K+AKGYRGR++ CFR+A+Q+VEKAL+YAYRDR+ KKR FR++WIQRI A + YG+ YSRF+ GLK+A I L+RKVL+D+A+ EP +FK++VE ++ Sbjct: 6 RGVTTHARHKKILKLAKGYRGRSSTCFRVAIQKVEKALRYAYRDRRAKKRNFRALWIQRINAGSRAYGLPYSRFMDGLKKAGIALDRKVLSDIAIREPDAFKSLVEKAQA 115
BLAST of NO05G01110 vs. NCBI_GenBank
Match: WP_029010942.1 (50S ribosomal protein L20 [Azospirillum halopraeferens]) HSP 1 Score: 139.8 bits (351), Expect = 7.300e-30 Identity = 68/109 (62.39%), Postives = 90/109 (82.57%), Query Frame = 0 Query: 50 RGLANH-RHKKIIKMAKGYRGR-TNCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVR 157 RG+ H RH+KI+K+AKGYRGR + CFR+A+++VEKAL+YAYRDR+ KKR+FR +WIQRI A V+Q+G+ YSRFI G+K A I ++RKVLAD+A EP SFKA+V+ R Sbjct: 6 RGVTTHARHRKILKLAKGYRGRNSTCFRIAIEKVEKALRYAYRDRRNKKRDFRGLWIQRINAGVRQHGLTYSRFINGIKLAGIEMDRKVLADLAAREPDSFKALVDRAR 114
BLAST of NO05G01110 vs. NCBI_GenBank
Match: WP_045912119.1 (50S ribosomal protein L20 [Orientia tsutsugamushi] >KJV57603.1 ribosomal protein L20 [Orientia tsutsugamushi str. Karp] >KJV88894.1 ribosomal protein L20 [Orientia tsutsugamushi str. UT76] >KJV97200.1 ribosomal protein L20 [Orientia tsutsugamushi str. UT76]) HSP 1 Score: 139.8 bits (351), Expect = 7.300e-30 Identity = 68/103 (66.02%), Postives = 88/103 (85.44%), Query Frame = 0 Query: 55 HRHKKIIKMAKGYRGRT-NCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVR 157 +RHKKI+K+AKGYRGR NCFR+A+Q+VEKALQY+YRDR+ +KR+FR++WIQRI AAV+QY M YS+FI GLKRANIT++RKV+AD+AV SF +VE + Sbjct: 12 NRHKKILKLAKGYRGRAKNCFRIAIQKVEKALQYSYRDRRNRKRQFRALWIQRINAAVRQYDMTYSQFINGLKRANITVDRKVMADLAVHNADSFLHLVELTK 114
BLAST of NO05G01110 vs. NCBI_GenBank
Match: OJW47248.1 (50S ribosomal protein L20 [Alphaproteobacteria bacterium 41-28]) HSP 1 Score: 139.0 bits (349), Expect = 1.200e-29 Identity = 66/106 (62.26%), Postives = 89/106 (83.96%), Query Frame = 0 Query: 50 RGLANH-RHKKIIKMAKGYRGRT-NCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVE 154 RG H RHKK++K+AKGYRGR+ NCFR+A+QRVEKALQYAYRDR+ +KR+FR +WIQRI A +++G+ YS+FI GL +A I ++RKVLAD+AV EP +FK++V+ Sbjct: 6 RGKTTHARHKKVLKLAKGYRGRSKNCFRIAIQRVEKALQYAYRDRRNRKRDFRGLWIQRINAGTREHGLTYSKFINGLTKAGIDIDRKVLADLAVHEPAAFKSIVD 111 The following BLAST results are available for this feature:
BLAST of NO05G01110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G01110 ID=NO05G01110|Name=NO05G01110|organism=Nannochloropsis oceanica|type=gene|length=741bpback to top protein sequence of NO05G01110.1 >NO05G01110.1-protein ID=NO05G01110.1-protein|Name=NO05G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bpback to top Synonyms
Publications
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