NO05G00770, NO05G00770 (gene) Nannochloropsis oceanica

Overview
NameNO05G00770
Unique NameNO05G00770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1791
Alignment locationchr5:249272..251062 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:249272..251062 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G00770 vs. NCBI_GenBank
Match: EWM28146.1 (hypothetical protein Naga_100004g5 [Nannochloropsis gaditana])

HSP 1 Score: 97.8 bits (242), Expect = 1.200e-16
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 0 
Query:    1 MSNVAVAPPDLVAGRRVVVDPSLCSLLRKQPALQGQAAVLQEDVTAWSKTVRVRFDGGKTGRIEVEAIRPSLNAAPE 78
            + +  V    L  G R+++DP+L S+ RKQ  LQGQA VLQEDVTAWSKTVRVRFDGGK GR+EVEAIRP+++   E
Sbjct:    7 IQSALVEAASLHKGTRILIDPTLASICRKQSDLQGQAGVLQEDVTAWSKTVRVRFDGGKAGRVEVEAIRPTVSMTTE 83
The following BLAST results are available for this feature:
BLAST of NO05G00770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28146.11.200e-1661.04hypothetical protein Naga_100004g5 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003795NSK003795Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00770.1NO05G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564676gene_2869Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g5gene2270Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00770.1NO05G00770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00770 ID=NO05G00770|Name=NO05G00770|organism=Nannochloropsis oceanica|type=gene|length=1791bp
ATGAGCAATGTCGCGGTGGCCCCGCCGGATCTTGTGGCAGGCAGGCGTGT
GGTGGTAGATCCCTCGCTTTGCTCCCTCTTGCGAAAGCAGCCGGCCCTAC
AAGGCCAGGCAGCCGTGCTCCAGGAAGACGTGACGGCGTGGTCCAAGACG
GTGCGTGTGCGATTTGATGGGGGAAAGACAGGCCGGATAGAGGTAGAGGC
AATTCGTCCTTCGCTGAATGCGGCGCCCGAGGAGTTAGCAGCAACGAATG
ATGACGATGGGAGTGCCGGCGGCAGCACGGACAGCCACAGTGCAGCTGAT
GCAGCGGCGGGCGACAAGGCAGGAAGCGGCAGCAGTCAAGGCAGTAGCAA
GTCCATGCGGGGTTCTCGCCGGTCCTCCAGCTCGACCCCCGTGAGTGCAC
CTAGCCCTCTTCCTCTTCCTCCTCCTCCTGCCTTGGGCCGCCGGAACAGC
AGCCGCAGTGCCATAGCGACACCCGCACCTGCTGCAGAGGAGAAGACGCC
GACGGCAGCAGCTGCAGCAGCAGCAACCTCAGAAGGAAGAGAAGAAAGTG
GAGGCGGGGGGAGAGGTGGTGGATCAGCGACAAGTACTCCTTCTCCTTCA
CGAGCCTCTTCTCCTGGACCTGCTGCCACTGCACAAGCAAAGGCGACCAC
TACTGCAGCCAGCCGTATCGGCAGCAGCAGCAGCAGCAGCAGCAGCAAGG
GTCCAATAAAATTAACCGAATTCGACCCTGAAACATGGGTGGGTAAAACT
GTACGATTCACGCAAGCCTCCGGACCACGGAGTAAGGGAAAGAAGGGGAG
GGTGCTCAGGGCAGGAGGGGGTTGGGTGACTGTCGAGGTGGCATCAGAGG
GGAAGGAGAAGGAGGAGGTGTCAGGAAGGTCGTATAATATTGTGGTGGAG
GACGAGGGTGGTGGGGAAGGAGGGGCGGAGGAAGAGCAGAGGTGCAGTGG
GGGTGCTGTGGAGGGGGAAGGGGAGGGGGAGGAAGAAGAGGAGGAACAGC
AGGCGCAGCGGCCGTCCTGGACTGATATGGTGGAGGGGCAAGATACAAGA
GAGGGCACAGTAGCGACAGGAGCAGGAGCAAGGAAGGAGGTTCCCCGTGC
TGGGTCCCCGGACGAGGAGGAGGAGGAGCAGCAGCAGATAGTGGAGGGGG
AGGGAGGGAGAGAGGGAGGTGTCGTTCCTGCCTTGCATGAAAATGCAATG
GACGCCATGGCGGTAGTCCCGTCATCTCAGGAAGGGAGCGAGGATGGGGG
GGAAGTATTGAGTAAGAGGGGAGGGAGGACAACGCGAAGAAGGTGCAATG
GAGGGAAGCGCCAGTCATCCACGACTTTGCCTCCGGTGCAGCCACCGGAG
GAGGAGAAATGGAGGGAGGTCGAAGAGGGGGAAGAGGAGGATGGAGGGAT
AGAGGTGGCGGGTATGGTTGGTGGGAAAGAGAGGAGGGAGTTGGAGGAGA
GCGACGAGGAAGAGGAGGAGATGAGAGGACATGTTGCGAAAGAGGAGGAG
GAGGAGGAAGAGGATGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAAAGGAGTCAGAGGAGTGCACCACGAAAGCGAGCGATCAGGTACGAGA
AGGATAAGGAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAAGAGGAG
GAGGAAGGGGGGGGGCAGGGCGGGATGCTGCGGCTGCCGCTTTATTCGCC
TCTTCCTCCGCCTCCACCATTGGCGATGACGCCACGACAGCAGCAGCAGC
AGCAGCAACAGCAGCAACAGCAGCAACAACAACAAGAATAG
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protein sequence of NO05G00770.1

>NO05G00770.1-protein ID=NO05G00770.1-protein|Name=NO05G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=597bp
MSNVAVAPPDLVAGRRVVVDPSLCSLLRKQPALQGQAAVLQEDVTAWSKT
VRVRFDGGKTGRIEVEAIRPSLNAAPEELAATNDDDGSAGGSTDSHSAAD
AAAGDKAGSGSSQGSSKSMRGSRRSSSSTPVSAPSPLPLPPPPALGRRNS
SRSAIATPAPAAEEKTPTAAAAAAATSEGREESGGGGRGGGSATSTPSPS
RASSPGPAATAQAKATTTAASRIGSSSSSSSSKGPIKLTEFDPETWVGKT
VRFTQASGPRSKGKKGRVLRAGGGWVTVEVASEGKEKEEVSGRSYNIVVE
DEGGGEGGAEEEQRCSGGAVEGEGEGEEEEEEQQAQRPSWTDMVEGQDTR
EGTVATGAGARKEVPRAGSPDEEEEEQQQIVEGEGGREGGVVPALHENAM
DAMAVVPSSQEGSEDGGEVLSKRGGRTTRRRCNGGKRQSSTTLPPVQPPE
EEKWREVEEGEEEDGGIEVAGMVGGKERRELEESDEEEEEMRGHVAKEEE
EEEEDGEEEEEEEEEEEERSQRSAPRKRAIRYEKDKEEEEEEEEEEEEEE
EEGGGQGGMLRLPLYSPLPPPPPLAMTPRQQQQQQQQQQQQQQQQE*
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Synonyms
Publications