NO05G00720, NO05G00720 (gene) Nannochloropsis oceanica

Overview
NameNO05G00720
Unique NameNO05G00720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4359
Alignment locationchr5:233532..237890 -

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Properties
Property NameValue
Descriptionpre-mRNA processing ribonucleoprotein binding region-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:233532..237890 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO:0000244spliceosomal tri-snRNP complex assembly
GO:0000398mRNA splicing, via spliceosome
GO:0000244spliceosomal tri-snRNP complex assembly
Vocabulary: Cellular Component
TermDefinition
GO:0046540U4/U6 x U5 tri-snRNP complex
GO:0046540U4/U6 x U5 tri-snRNP complex
Vocabulary: INTERPRO
TermDefinition
IPR036070Nop_dom_sf
IPR027105Prp31
IPR002687Nop_dom
IPR012976NOSIC
Homology
BLAST of NO05G00720 vs. NCBI_GenBank
Match: CBN80076.1 (Pre-mRNA processing ribonucleoprotein, binding region; NOSIC [Ectocarpus siliculosus])

HSP 1 Score: 265.8 bits (678), Expect = 2.300e-67
Identity = 139/272 (51.10%), Postives = 193/272 (70.96%), Query Frame = 0
Query:  125 LPKLKGKTLDVVATLSKTRRYQEHLEKVKDAISIENPPPMSVPLESDPEYQLIVSSNRLVQDIDEEILTVHRFVVDLYSLKFPELESLVPNKLDYVRTVQKIGNEMDLTIVDLNDLLPSATVMVVSVTASSTSGKPLPPSLLSECLGGCDAVLSLMEARSLVLSYVERRMSVLAPNTCALVGSKIAAQLMGLAGGLVSLSRIPASHIQVMGQEKKHLQGMAAAQGIPHAGVLIGSDVVMSAPPALRQKALRLVASKFALTTRMDAYQQEGGG 397
            L ++  +T+D VA L K+ R++  + ++ + +  E P P    LE DPEY+L+V+SN L+QDID E++ VHRFVVD YS KFPEL+SL+P   DYVRTVQ + NEMD+T V+L+  LP  TVMVVSVT S+TSG+PL    L EC+ GC+   +L  A++ +L +VE RM+ +APN CAL+GS+I AQL+GL GGL ++S+ P+ ++QVMGQEKK L G ++   + HAG+L  SDVV  APP LR KALR+ A+K +L +R D+Y  +  G
Sbjct:   98 LGRIGDRTVDSVAKLRKSDRFKSQMAEIDECLKRE-PAPRVGALEDDPEYKLVVASNELIQDIDPEMVEVHRFVVDRYSQKFPELDSLIPQPADYVRTVQVMRNEMDMTQVELDSALPQTTVMVVSVTGSTTSGQPLSEEDLHECIKGCEEYEALAAAKASILDFVETRMTSMAPNVCALIGSRITAQLLGLTGGLTAMSKTPSCNLQVMGQEKKTLSGFSSKATVSHAGLLYQSDVVQLAPPYLRTKALRVTAAKVSLASRFDSYGNDPSG 368          
BLAST of NO05G00720 vs. NCBI_GenBank
Match: XP_022956658.1 (U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X1 [Cucurbita moschata] >XP_023004221.1 U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X1 [Cucurbita maxima] >XP_023526610.1 U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250.0 bits (637), Expect = 1.300e-62
Identity = 134/273 (49.08%), Postives = 187/273 (68.50%), Query Frame = 0
Query:  125 LPKLKGKTLDVVATLSKTRRYQEHLEKVKDAISIE-NPPPMSVPLESDPEYQLIVSSNRLVQDIDEEILTVHRFVVDLYSLKFPELESLVPNKLDYVRTVQKIGNEMDLTIVDLNDLLPSATVMVVSVTASSTSGKPLPPSLLSECLGGCDAVLSLMEARSLVLSYVERRMSVLAPNTCALVGSKIAAQLMGLAGGLVSLSRIPASHIQVMGQEKKHLQGMAAAQGIPHAGVLIGSDVVMSAPPALRQKALRLVASKFALTTRMDAYQQEGGG 397
            L  L    LD V+ L KT+RY + ++KV DA+ ++ N       LE DPEYQLIV  N L  DI+ EI+ +H F+ D Y LKFPELESLV + +DY R V+KIGNEMDLT+VDL  LLPSA +MVVSVTAS+TSGKPLP  +L + +  CD  L+L  A+ +VL++VE RM  +APN  A+VGS +AA+LMG AGGLV+L+++PA ++Q++G +KK+L G + A      G +  +++  S PP L+ +A RL+A+K  L  R+D+ + +  G
Sbjct:   43 LESLNYDDLDSVSKLQKTQRYNDIMQKVADALEMDSNVSNQGFVLEDDPEYQLIVECNALSVDIENEIIIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAVIMVVSVTASTTSGKPLPEEILQKTIDACDRALTLDSAKKMVLNFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGLVALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEIFQSTPPPLKMRACRLIAAKSTLAARVDSTRGDPTG 315          
BLAST of NO05G00720 vs. NCBI_GenBank
Match: XP_022956659.1 (U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X2 [Cucurbita moschata] >XP_023004304.1 U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X2 [Cucurbita maxima] >XP_023526619.1 U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250.0 bits (637), Expect = 1.300e-62
Identity = 134/273 (49.08%), Postives = 187/273 (68.50%), Query Frame = 0
Query:  125 LPKLKGKTLDVVATLSKTRRYQEHLEKVKDAISIE-NPPPMSVPLESDPEYQLIVSSNRLVQDIDEEILTVHRFVVDLYSLKFPELESLVPNKLDYVRTVQKIGNEMDLTIVDLNDLLPSATVMVVSVTASSTSGKPLPPSLLSECLGGCDAVLSLMEARSLVLSYVERRMSVLAPNTCALVGSKIAAQLMGLAGGLVSLSRIPASHIQVMGQEKKHLQGMAAAQGIPHAGVLIGSDVVMSAPPALRQKALRLVASKFALTTRMDAYQQEGGG 397
            L  L    LD V+ L KT+RY + ++KV DA+ ++ N       LE DPEYQLIV  N L  DI+ EI+ +H F+ D Y LKFPELESLV + +DY R V+KIGNEMDLT+VDL  LLPSA +MVVSVTAS+TSGKPLP  +L + +  CD  L+L  A+ +VL++VE RM  +APN  A+VGS +AA+LMG AGGLV+L+++PA ++Q++G +KK+L G + A      G +  +++  S PP L+ +A RL+A+K  L  R+D+ + +  G
Sbjct:   12 LESLNYDDLDSVSKLQKTQRYNDIMQKVADALEMDSNVSNQGFVLEDDPEYQLIVECNALSVDIENEIIIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAVIMVVSVTASTTSGKPLPEEILQKTIDACDRALTLDSAKKMVLNFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGLVALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEIFQSTPPPLKMRACRLIAAKSTLAARVDSTRGDPTG 284          
BLAST of NO05G00720 vs. NCBI_GenBank
Match: XP_024376065.1 (U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X1 [Physcomitrella patens] >PNR54505.1 hypothetical protein PHYPA_008182 [Physcomitrella patens])

HSP 1 Score: 249.6 bits (636), Expect = 1.700e-62
Identity = 136/265 (51.32%), Postives = 182/265 (68.68%), Query Frame = 0
Query:  125 LPKLKGKTLDVVATLSKTRRYQEHLEKVKDAISI-ENPPPMSVPLESDPEYQLIVSSNRLVQDIDEEILTVHRFVVDLYSLKFPELESLVPNKLDYVRTVQKIGNEMDLTIVDLNDLLPSATVMVVSVTASSTSGKPLPPSLLSECLGGCDAVLSLMEARSLVLSYVERRMSVLAPNTCALVGSKIAAQLMGLAGGLVSLSRIPASHIQVMGQEKKHLQGMAAAQGIPHAGVLIGSDVVMSAPPALRQKALRLVASKFALTTRMD 389
            +P LK   LD VA L K++R+ + ++KV +A++         +  E DPEYQLIV  N L  DID EI  +H F+ D Y  KFPELESLV + +DY R V++IGNEMDLT+VDL  LLPSAT+MVVSVTAS+TSGKPL    L + +  CD  L+L EA+  VL +VE RM  +APN  A+VGS +AA+LMG+AGGL +LS++PA ++Q++G +KK+L G + A  +PH G +  +++V S PP LR KA RLVA K  L  R+D
Sbjct:  154 VPILKFDDLDSVAKLQKSQRFHDIMKKVDEAMANGTESSSKGLVAEDDPEYQLIVECNALSVDIDNEITIIHNFIRDKYRAKFPELESLVLHPIDYSRLVKQIGNEMDLTLVDLEGLLPSATIMVVSVTASTTSGKPLSEENLQKTIEACDRALALDEAKKKVLEFVESRMGYIAPNLSAVVGSTVAAKLMGVAGGLAALSKMPACNVQILGAKKKNLAGFSTATALPHTGFVFHTEIVQSTPPPLRMKACRLVAGKSTLAARVD 418          
BLAST of NO05G00720 vs. NCBI_GenBank
Match: XP_024376066.1 (U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X2 [Physcomitrella patens])

HSP 1 Score: 249.6 bits (636), Expect = 1.700e-62
Identity = 136/265 (51.32%), Postives = 182/265 (68.68%), Query Frame = 0
Query:  125 LPKLKGKTLDVVATLSKTRRYQEHLEKVKDAISI-ENPPPMSVPLESDPEYQLIVSSNRLVQDIDEEILTVHRFVVDLYSLKFPELESLVPNKLDYVRTVQKIGNEMDLTIVDLNDLLPSATVMVVSVTASSTSGKPLPPSLLSECLGGCDAVLSLMEARSLVLSYVERRMSVLAPNTCALVGSKIAAQLMGLAGGLVSLSRIPASHIQVMGQEKKHLQGMAAAQGIPHAGVLIGSDVVMSAPPALRQKALRLVASKFALTTRMD 389
            +P LK   LD VA L K++R+ + ++KV +A++         +  E DPEYQLIV  N L  DID EI  +H F+ D Y  KFPELESLV + +DY R V++IGNEMDLT+VDL  LLPSAT+MVVSVTAS+TSGKPL    L + +  CD  L+L EA+  VL +VE RM  +APN  A+VGS +AA+LMG+AGGL +LS++PA ++Q++G +KK+L G + A  +PH G +  +++V S PP LR KA RLVA K  L  R+D
Sbjct:    4 VPILKFDDLDSVAKLQKSQRFHDIMKKVDEAMANGTESSSKGLVAEDDPEYQLIVECNALSVDIDNEITIIHNFIRDKYRAKFPELESLVLHPIDYSRLVKQIGNEMDLTLVDLEGLLPSATIMVVSVTASTTSGKPLSEENLQKTIEACDRALALDEAKKKVLEFVESRMGYIAPNLSAVVGSTVAAKLMGVAGGLAALSKMPACNVQILGAKKKNLAGFSTATALPHTGFVFHTEIVQSTPPPLRMKACRLVAGKSTLAARVD 268          
BLAST of NO05G00720 vs. NCBI_GenBank
Match: XP_024577164.1 (u4 u6 small nuclear ribonucleoprotein prp31-like [Plasmopara halstedii] >CEG40795.1 u4 u6 small nuclear ribonucleoprotein prp31-like [Plasmopara halstedii])

HSP 1 Score: 249.2 bits (635), Expect = 2.200e-62
Identity = 139/284 (48.94%), Postives = 190/284 (66.90%), Query Frame = 0
Query:  114 DVERGSEFEKALPKLKGKTLDVVA--TLSKTRRYQEHLEKVKDAISIENPPPMSV----PL-ESDPEYQLIVSSNRLVQDIDEEILTVHRFVVDLYSLKFPELESLVPNKLDYVRTVQKIGNEMDLTIV-DLNDLLPSATVMVVSVTASSTSGKPLPPSLLSECLGGCDAVLSLMEARSLVLSYVERRMSVLAPNTCALVGSKIAAQLMGLAGGLVSLSRIPASHIQVMGQEKKHLQGMAAAQGIPHAGVLIGSDVVMSAPPALRQKALRLVASKFALTTRMDA 390
            D E G++    L K   K   V A  TL  + +Y  H+EK++  + +++    S+    PL E  PEY L+V+SN L+  ID+EI  VHRF+ D+Y+ KFPEL+SLVPN LDY R V+ +GNEMDLT+V +L  +LPS+ V+ +SVT S TSGKPL P  L  C+  CD +LSL   ++++L +VE RM  LAPN   LVG++IAAQL+GLAGG+  L+RIP+ ++QV+GQEKK L G ++A  + H G+L  SD+V S PP LR KA R VA K AL  R+D+
Sbjct:   64 DSESGTKKADDLIKSNNKHRSVAAVLTLKYSPKYLSHVEKIQQYVDVDDESAASISKPRPLEEGSPEYDLVVTSNDLMVQIDDEIEVVHRFIADIYAAKFPELDSLVPNALDYARVVKAVGNEMDLTLVEELPKILPSSAVIGISVTGSGTSGKPLDPLALKVCMEACDELLSLENDKNMILRFVESRMKYLAPNLSQLVGTRIAAQLIGLAGGVAQLARIPSCNLQVLGQEKKVLSGFSSAAALKHTGILFFSDLVQSVPPYLRMKACRAVAGKLALMARVDS 347          
BLAST of NO05G00720 vs. NCBI_GenBank
Match: OWZ23553.1 (U4/U6 small nuclear ribonucleoprotein Prp31 [Phytophthora megakarya])

HSP 1 Score: 248.4 bits (633), Expect = 3.800e-62
Identity = 137/281 (48.75%), Postives = 190/281 (67.62%), Query Frame = 0
Query:  114 DVERGSEFEKAL-PKLKGKTLDVVATLSKTRRYQEHLEKVKDAISIENPPPMSVP---LESDPEYQLIVSSNRLVQDIDEEILTVHRFVVDLYSLKFPELESLVPNKLDYVRTVQKIGNEMDLTIV-DLNDLLPSATVMVVSVTASSTSGKPLPPSLLSECLGGCDAVLSLMEARSLVLSYVERRMSVLAPNTCALVGSKIAAQLMGLAGGLVSLSRIPASHIQVMGQEKKHLQGMAAAQGIPHAGVLIGSDVVMSAPPALRQKALRLVASKFALTTRMDA 390
            ++E  ++  +AL    K + +  VA L ++ +Y EH++K++  + + N    + P    E   EY L+V+SN L+  ID+EI  VHRF+ ++Y+ KFPEL+SLVPN LDY R VQ IGNEMDLT+V +L  LLPS+ V+ +SVT S TSGKPL P  L  C   CD +LSL + ++++L +VE RM  LAPN   LVG++IAAQL+GLAGG+  L+RIP+ ++QV+GQEKK L G ++A  + H GVL  SD+V S PP LR KA R VA K AL  R+D+
Sbjct:   58 ELEEPADLAEALRSNAKQRGVATVANLKRSSKYVEHVQKIQQYVDVGNASTSAKPQPLQEGSVEYDLVVTSNDLMVQIDDEIEAVHRFIAEIYAAKFPELDSLVPNALDYARVVQAIGNEMDLTLVEELPKLLPSSAVIGISVTGSGTSGKPLGPEDLKTCTEACDELLSLDKDKNMILRFVESRMKYLAPNVSQLVGTRIAAQLIGLAGGVAQLARIPSCNLQVLGQEKKVLSGFSSAAALKHTGVLFFSDLVQSVPPYLRMKACRAVAGKLALMARVDS 338          
BLAST of NO05G00720 vs. NCBI_GenBank
Match: PTQ39988.1 (hypothetical protein MARPO_0042s0037 [Marchantia polymorpha])

HSP 1 Score: 248.4 bits (633), Expect = 3.800e-62
Identity = 134/258 (51.94%), Postives = 184/258 (71.32%), Query Frame = 0
Query:  133 LDVVATLSKTRRYQEHLEKVKDAISIENPPPMSVPL-ESDPEYQLIVSSNRLVQDIDEEILTVHRFVVDLYSLKFPELESLVPNKLDYVRTVQKIGNEMDLTIVDLNDLLPSATVMVVSVTASSTSGKPLPPSLLSECLGGCDAVLSLMEARSLVLSYVERRMSVLAPNTCALVGSKIAAQLMGLAGGLVSLSRIPASHIQVMGQEKKHLQGMAAAQGIPHAGVLIGSDVVMSAPPALRQKALRLVASKFALTTRMDA 390
            LD VA L K++R+ +  +KV +A++  +    +  + E DPEYQLIV  N L  DID EI+ +H F+ D Y LKFPELESLV + +DY R V+KI NEMDLT+VDL  LLPSAT+MVVSVTAS+TSGKPL    L + L  CD  L+L EA+  VL++VE RM  +APN  A+VGS++AA+L+G+AGGL SL+++PA ++Q++G +KK+L G + A  +PH G +  +++V S PPALR +A RLVA K  L  R+D+
Sbjct:   50 LDSVAKLQKSQRFHDLTKKVDEALAKGSEDSKTGRVSEDDPEYQLIVDCNTLSVDIDNEIVIIHNFIRDKYRLKFPELESLVLHPIDYSRVVRKIANEMDLTLVDLEGLLPSATIMVVSVTASTTSGKPLSEENLQKTLDACDRALALDEAKKKVLAFVESRMGYIAPNLSAIVGSEVAAKLIGVAGGLSSLAKMPACNVQILGAKKKNLAGFSTATALPHTGFVFHTEIVQSTPPALRTRACRLVAGKSTLAARVDS 307          
BLAST of NO05G00720 vs. NCBI_GenBank
Match: GAY05142.1 (U4/U6 small nuclear ribonucleoprotein Prp31 [Pythium insidiosum])

HSP 1 Score: 247.7 bits (631), Expect = 6.400e-62
Identity = 125/260 (48.08%), Postives = 182/260 (70.00%), Query Frame = 0
Query:  130 GKTLDVVATLSKTRRYQEHLEKVKDAISIENPPPMSVPLESDPEYQLIVSSNRLVQDIDEEILTVHRFVVDLYSLKFPELESLVPNKLDYVRTVQKIGNEMDLTIVDLNDLLPSATVMVVSVTASSTSGKPLPPSLLSECLGGCDAVLSLMEARSLVLSYVERRMSVLAPNTCALVGSKIAAQLMGLAGGLVSLSRIPASHIQVMGQEKKHLQGMAAAQGIPHAGVLIGSDVVMSAPPALRQKALRLVASKFALTTRMDA 390
            GK L  +A L ++++Y +H++ ++  +    P      +E   EY+L+V+SN L+  ID+EI  +HRFV ++Y+ +FPEL++LVPN LDY R VQ IGNEMD+T+VDL+ LLPSA V+ +SVT S+TSGKPL P  L  CL  C  +LSL + + ++L +VE RM+ LAPN   LVG++IAAQL+GLAGG+ +LSRIP+ ++QV+GQ++K L G ++   + H GV+   D+V + PP LR KA R +A K AL  R+D+
Sbjct:  703 GKGLSAIAHLKRSKKYIDHVQTIQTHVDKNEPIHADRLVEGSAEYELVVTSNDLMVQIDDEIAAIHRFVAEIYAKRFPELDTLVPNALDYARVVQAIGNEMDMTLVDLSQLLPSAAVISISVTGSATSGKPLTPEDLKICLDACAELLSLSDDKQMILRFVESRMNFLAPNVSQLVGTRIAAQLVGLAGGVANLSRIPSCNLQVLGQQRKVLSGFSSTAALRHTGVIFYCDLVQNVPPYLRMKACRALAGKIALMARVDS 962          
BLAST of NO05G00720 vs. NCBI_GenBank
Match: GAX92944.1 (Hypothetical protein PINS_000853 [Pythium insidiosum])

HSP 1 Score: 247.7 bits (631), Expect = 6.400e-62
Identity = 125/260 (48.08%), Postives = 182/260 (70.00%), Query Frame = 0
Query:  130 GKTLDVVATLSKTRRYQEHLEKVKDAISIENPPPMSVPLESDPEYQLIVSSNRLVQDIDEEILTVHRFVVDLYSLKFPELESLVPNKLDYVRTVQKIGNEMDLTIVDLNDLLPSATVMVVSVTASSTSGKPLPPSLLSECLGGCDAVLSLMEARSLVLSYVERRMSVLAPNTCALVGSKIAAQLMGLAGGLVSLSRIPASHIQVMGQEKKHLQGMAAAQGIPHAGVLIGSDVVMSAPPALRQKALRLVASKFALTTRMDA 390
            GK L  +A L ++++Y +H++ ++  +    P      +E   EY+L+V+SN L+  ID+EI  +HRFV ++Y+ +FPEL++LVPN LDY R VQ IGNEMD+T+VDL+ LLPSA V+ +SVT S+TSGKPL P  L  CL  C  +LSL + + ++L +VE RM+ LAPN   LVG++IAAQL+GLAGG+ +LSRIP+ ++QV+GQ++K L G ++   + H GV+   D+V + PP LR KA R +A K AL  R+D+
Sbjct:  745 GKGLSAIAHLKRSKKYIDHVQTIQTHVDKNEPIHADRLVEGSAEYELVVTSNDLMVQIDDEIAAIHRFVAEIYAKRFPELDTLVPNALDYARVVQAIGNEMDMTLVDLSQLLPSAAVISISVTGSATSGKPLTPEDLKICLDACAELLSLSDDKQMILRFVESRMNFLAPNVSQLVGTRIAAQLVGLAGGVANLSRIPSCNLQVLGQQRKVLSGFSSTAALRHTGVIFYCDLVQNVPPYLRMKACRALAGKIALMARVDS 1004          
The following BLAST results are available for this feature:
BLAST of NO05G00720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN80076.12.300e-6751.10Pre-mRNA processing ribonucleoprotein, binding reg... [more]
XP_022956658.11.300e-6249.08U4/U6 small nuclear ribonucleoprotein Prp31 homolo... [more]
XP_022956659.11.300e-6249.08U4/U6 small nuclear ribonucleoprotein Prp31 homolo... [more]
XP_024376065.11.700e-6251.32U4/U6 small nuclear ribonucleoprotein Prp31 homolo... [more]
XP_024376066.11.700e-6251.32U4/U6 small nuclear ribonucleoprotein Prp31 homolo... [more]
XP_024577164.12.200e-6248.94u4 u6 small nuclear ribonucleoprotein prp31-like [... [more]
OWZ23553.13.800e-6248.75U4/U6 small nuclear ribonucleoprotein Prp31 [Phyto... [more]
PTQ39988.13.800e-6251.94hypothetical protein MARPO_0042s0037 [Marchantia p... [more]
GAY05142.16.400e-6248.08U4/U6 small nuclear ribonucleoprotein Prp31 [Pythi... [more]
GAX92944.16.400e-6248.08Hypothetical protein PINS_000853 [Pythium insidios... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003800NSK003800Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00720.1NO05G00720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669718gene_2864Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_102057g1gene2264Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00720.1NO05G00720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00720 ID=NO05G00720|Name=NO05G00720|organism=Nannochloropsis oceanica|type=gene|length=4359bp
GTCAGCCATAGTGACTACTCTGTGGTCGTTGTGGGGATTATGTGGGGAGA
GTTTTTGTGAGTGTCCAACACCCCCCATGTCCTTCTTTTGGGTCTAGCGC
TGCGCAAGTTGCCTCAGCTCTCAACCCCGGCATCCTCTTTTTCCACCAGC
CGCTATCCCACTGCAGGCAACATAATCCATGCGTAAGCGTACGTCTCGTC
TTGGTACGTGGGCGCTGTTGGCTGCTGGTGGATGGCCAAAGGCAGGAGTC
GATTAGGCGATGAGGCCTCCTCCCCCTCCTGATGCTCAGACGAATGGCAG
CCACGCTTGTCCACCACAAGGCATCCAAAATCATTCAGCACCACAGACAT
GGAGATTACTTATGTTGTTAGCGTGAGAGTAGGTAAAGATGAGGTGCATG
AAAGCGTTTCGAAGCACGCAAACATAGAGAAGAAGTTTCCTCCTCTGCCT
CTCCGCGGCCACCCGCGTTCGCTTGTGCGGCCTGCCTTCTCCTTCGTCCA
CACAACTGTGCTGCGCGCACCGTGGAGTGGCGTCTCCTTATTCTTCGTGC
TCATTCCTTCCTCATGgtaagctattattgcctgtgtatgagggttggaa
tcatcggtcatgcaatgccttaagactaagacgcccaccaccaaccactt
tttctccggctccccacctcatgcacgcatcccagGAGCAACGAGCAGCA
AGCTGCAGCATAGGCAACAACCGACCTCCTCTCCAGGAAGCAAGCGGCCG
TCTCTGCATCATGgtacgtcccccgacatcgtcttgcttttcatgcgtat
ttatttgtcagattgcatcgctgctactctagtcgccccccgcccccgtc
tctaccttctctctttccctccaacccgtccacttggccgccccctcacc
tttcctcggcctgcccccctctccttcaccacgcgcacacagACAGCACT
TGGGGACGACTCCTTCATCAACGACTTGGATGGGCTCGGGGATGATTCAG
AGGATGAGGAGGAGGAAGAGAAGGAGAGAAGGGAGGGCACGGTTGGCAAC
GGAGGAGGTGGCAAGAGTAGTAATGGAGGCGTGCGTGTCAAGGCGGAAGA
CCTCGACAGTCTCGATGACAGCGAGGACGAAGATGAGGAGGAGGGGAGGG
AAAACGGACGAAAGAAACGAAAAATGAAGGAGGGAGGGGAGGAAGGGATG
GACGTGGAGAGAGGCAGTGAGTTCGAAAAGGCTTTGCCAAAGCTGAAAGG
GAAGACGCTGGATGTCGTCGCTACTTTAAGTAAGACCAGGCGCTACCAAG
AGCACCTGGAGAAGGTCAAGGACGCGATTAGCATAGAGAATCCACCTCCT
ATGAGTGTGCCGCTGGAGAGTGACCCAGAGTATCAGCTGATTGTGTCATC
GAATCGATTGGTGCAAGgtaaaagggacggagggacggagggatgggagg
gacggaggggcggatggactatatgctgatcgactgatgccaccaactcg
ccctttaccccctccctcctttccttcctttccttcctccctagACATCG
ACGAGGAGATACTTACCGTGCACCGGTTTGTGGTTGACCTCTACTCCCTC
AAGTTCCCCGAGCTCGAGTCCCTCGTTCCCAACAAGCTGGACTACGTCCG
AACAGTCCAGAAGATCGGTAACGAGATGgtaggtacgagccctcccatcg
tccctccccctatccctctcagtgtgcctttctgcgccacattcctctca
cccttccccttcctctctcccttcctccctccctccctccctcagGACCT
GACCATTGTCGACCTCAATGATCTCCTCCCATCTGCAACTGTGATGGTGG
TGTCCGTCACGGCCAGTAGCACCAGCGGGAAGCCCCTCCCGCCTTCTCTC
CTTTCGGAATGTCTGGGGGGATGCGACGCCGTCTTATCCCTTATGGAGGC
ACGATCCCTCGTCCTGTCGTACGTTGAACGAAGGATGAGCGTTTTGGCGC
CCAACACCTGTGCCCTTGTTGGGAGTAAGATAGCGGCCCAGCTGATGGGT
CTGGCGGGAGGGTTAGTGTCCCTGTCGCGCATTCCCGCGAGTCACATACA
Ggtagggacggggagggaggaagggaggaagggagggaaggaggggatga
gggagatgtgtctccttagcgcatcccctacaggtagagagtatgaggga
agggagggagggaggaagggagggagggaggaagggccagctacttttca
tttcaagtgaccgaccctctcctcccttccctccctcccccctccctccc
cctgtcagGTGATGGGACAGGAGAAGAAGCACCTGCAGGGCATGGCTGCA
GCCCAAGGCATCCCTCACGCGGGTGTATTAATTGGGAGTGACGTTGTCAT
GAGCGCCCCTCCGGCCTTGAGGCAAAAGGCGCTTCGGTTGGTGGCGAGTA
AGTTCGCCTTGACCACCCGTATGGATGCGTATCAACAGGAAGGAGGGGGG
GAGGGGGGGAGGGCGGGAGGGCGTTTCGGGCGGAGTGCGAAGACAAGATC
ATGAAATGGCAAGAGCCCAGCAAAGGGAAGGAGAAAAAAGCCCTTCCGGT
GCCGGAGATGCAGGCGAGGAAGAAGAGGGCGGGGAAGAGGGTCAGTAAGG
CGAAGGAGCGATTCGCGATGACTGAGATGCGGAAGGAGCATGGACGGCGg
tacgcagctttccctctttgcctcccttcttctctccctcccaccctccc
tctgcatactttaaaaacaccaagctatatcctctcttaccctccctggc
ctccctctctttcccttccctctttccctccccccttatctctttcagGG
CGTTCGGTGGCGCCAGCGCCGGTGCAGAATACGGCGACGAGGCCATGGGT
ATGGACACAGgtgcgtgctttcaagtgctcttccctccctccctctcttc
cttccttccttccccccatcgtaccgctacctttcctcgaacacctgacg
tatgttaccccctccctccctccccgcccgccctccgtccttccctccct
ccactagGTATGCTGGGGTCGCAAGGAGGGAGACTCCGACTGCCAGGCGC
TAAGGAGCAGAAGCAGAATATTGGTAAAAAGAAGAAGGAGGAGATGGCGA
AGATGGCGGGCGGGGGAGGGTCCGGGGGAGGAAGGGTTGTGCTGGACATG
GGAGGAGGCTCTGGGGCGACTGGTGGTATGGCCTCGTCGCTGGTGTTTAC
ACCGACGCAAGGGCTAGAGTTGGTGAATCCGAATGCGATGGAAGAGAAAA
AGAGGCGGCTGGAGGAGGCGAATAAGAGCTGGTTTGACTCGAACAGTGGA
TTTATGAGTGCTAAGCCAAAGTAGACAGGTGGGGGGGGGGCAGAAGGAAG
GGAAAGCAGCAGCAGCAGCAACAACAGCAGCAGCACCACCACCACCAGCA
GCACCACTAGCAGCACCAGCACCAGCACCAGCCTCAGCACCAGCACCAGC
GCAAGCGCAAGCGCCAGCACCAGCACCAGCACCACCCGCAGGAGCAGACG
GGGGGTAGTGACGGAAATAATAGGGGGGGAGAGGGATTAGAGTACGGGCG
ATATGGTATGAAAAAGAAGAAATATAGAGAATGTGCAGACACAAAGATCG
AGATAAGCAGAGAGGCTACAACATATTTTCCTTTGTCTCCCATTTATCAT
GTTTTCCCTTACCTCTTACCCTCTACCTTCCTTTCACCTTCTCCTCTTCC
ATCCATTCCTCCGTCTCAACCTTGCCTTTCTCCTCTTTCTCCCTTCGATC
TCTTCCTCTTTCTCAATTCCGAGCCGCTGGACGGCCGTATTTGCGACGCC
AGGCCTCCACGTCCACGCCCCGCACGCTGCTACTCCTGCTTCTGTCACTA
CCTTTTCTTATCACATTTGCAACAACAGCGCCAAAGTCAGGAGGTGGACA
AGGCGAAGGCGTAGCAGCAGCAGCAGTGGCTCTAGATAGGATCGGTCGCG
CAGTGAAATAAAACGGAGGTGGTAAAGAAGAGCCTGAAGAGGAAAAGGGG
CATGAGGAGAAGGAGGAAGTAGAACAGGGGGCTGGGATCTGGTAGAACCC
CGCACTCCGCAGCTCCGCAATCTCCTTCCTCAAATCCTGGCTTTCGCGCC
GCCATTCCTGCAGCAACCGCATGGCCAATGTCCCCTTTCCACTGTTGATG
TTCCCACTTCTGCTAGTGCTGCTATTGGGTCCCCTGCCTCGTCTCCTCGT
CAATGCTGCACTGTAATTTTCTCCCCCTCCTGCCAACATGTGTCGCGGCA
CAGGCGACACAGGTGCCGGTGGAGACATGAATAAATTCTCCGGTCCATCG
TCCTCCTCC
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protein sequence of NO05G00720.1

>NO05G00720.1-protein ID=NO05G00720.1-protein|Name=NO05G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MEQRAASCSIGNNRPPLQEASGRLCIMTALGDDSFINDLDGLGDDSEDEE
EEEKERREGTVGNGGGGKSSNGGVRVKAEDLDSLDDSEDEDEEEGRENGR
KKRKMKEGGEEGMDVERGSEFEKALPKLKGKTLDVVATLSKTRRYQEHLE
KVKDAISIENPPPMSVPLESDPEYQLIVSSNRLVQDIDEEILTVHRFVVD
LYSLKFPELESLVPNKLDYVRTVQKIGNEMDLTIVDLNDLLPSATVMVVS
VTASSTSGKPLPPSLLSECLGGCDAVLSLMEARSLVLSYVERRMSVLAPN
TCALVGSKIAAQLMGLAGGLVSLSRIPASHIQVMGQEKKHLQGMAAAQGI
PHAGVLIGSDVVMSAPPALRQKALRLVASKFALTTRMDAYQQEGGGEGGR
AGGRFGRSAKTRS*
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Synonyms
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