NO05G00700, NO05G00700 (gene) Nannochloropsis oceanica

Overview
NameNO05G00700
Unique NameNO05G00700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2024
Alignment locationchr5:229529..231552 -

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Properties
Property NameValue
DescriptionHd phosphohydrolase family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:229529..231552 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009218HD_phosphohydro
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Homology
BLAST of NO05G00700 vs. NCBI_GenBank
Match: WP_089794900.1 (hypothetical protein [Chryseobacterium wanjuense] >SEW47367.1 Predicted metal-dependent phosphohydrolase, HD superfamily [Chryseobacterium wanjuense])

HSP 1 Score: 100.5 bits (249), Expect = 8.100e-18
Identity = 51/137 (37.23%), Postives = 76/137 (55.47%), Query Frame = 0
Query:   53 EEAVLDRWWQEIVQGYTNPVRRYHGLTHLQQMFGEMDRHAGRLARPDLVALAIFFHDLIYDPGSSTNEEDSAERFHLFAQEATRLPMKDIKKVHTYILATKTHKPAPPPIEDDKDEDLLLFLDIDMSILGQPRQVYM 190
            ++ +++  W EI Q Y+   R YH L HL+ MF E+D    RL     ++ ++F+HD+IYD  S +NEE SAE F     E   +  + +KK+   I+ATKTH       +  +D D    LD D+SILG+  + YM
Sbjct:   17 DQHLIENLWSEIEQKYSEKSRYYHNLEHLENMFSELDAVKDRLENYSFISFSVFYHDVIYDASSKSNEEKSAE-FAKIRLEKLHVDSESVKKISEQIIATKTH-------QKSEDNDTNYLLDADLSILGKDLKTYM 145          
BLAST of NO05G00700 vs. NCBI_GenBank
Match: WP_096065703.1 (hypothetical protein [Psychrobacter sp. FDAARGOS_221] >PNK61009.1 hypothetical protein A6J60_009025 [Psychrobacter sp. FDAARGOS_221])

HSP 1 Score: 100.5 bits (249), Expect = 8.100e-18
Identity = 55/140 (39.29%), Postives = 78/140 (55.71%), Query Frame = 0
Query:   61 WQEIVQGYTNPVRRYHGLTHLQQMFGEMDRHAGRLARPDLVALAIFFHDLIYDPGSSTNEEDSAERFHLFAQEATRLP---MKD----IKKVHTYILATKTHKPAPPPIEDD-----KDEDLLLFLDIDMSILGQPRQVY 189
            WQ+I   Y+ P R YH LTHL QMF + D+H  +L  P+ + LAI++HD+IYDP  + NE  SA+ F        +L     K     I++V   I+ T  H+ +    E +     K +D   FLD+D++ILG PRQVY
Sbjct:   52 WQDICHHYSEPQRHYHTLTHLAQMFHQFDKHQNQLHNPNAIELAIWYHDIIYDPTQTDNERQSADYFQRVVNTCPQLADLVAKQNNLLIQQVTALIMMTAKHEVSQADAELEQKITLKVQDSQYFLDMDLAILGSPRQVY 191          
BLAST of NO05G00700 vs. NCBI_GenBank
Match: XP_636024.1 (predicted HD phosphohydrolase family protein [Dictyostelium discoideum AX4] >EAL62516.1 predicted HD phosphohydrolase family protein [Dictyostelium discoideum AX4])

HSP 1 Score: 100.1 bits (248), Expect = 1.100e-17
Identity = 54/162 (33.33%), Postives = 88/162 (54.32%), Query Frame = 0
Query:   27 MEVGLYVRWRRALDGDDARTTGASAPEEAVLDRWWQEIVQGYTNPVRRYHGLTHLQQMFGEMDRHAGRLARPDLVALAIFFHDLIYDPGSSTNEEDSAERFHLFAQEATRLPMKDIKKVHTYILATKTHKPAPPPIEDDKDEDLLLFLDIDMSILGQPRQVY 189
            M+  L+ +W + +              + + ++WW  I + Y    R YH LTH+ ++    ++   +L + +++  +I+FHD+IYDP  S NEE SA+ F  F+ +  +L  + I  V+ YILAT  H       +++KD DLL FLD+D+SILG    VY
Sbjct:    1 MQTNLFNKWNKIIKISKIENF------QEINNKWWNIINERYNEKQRFYHNLTHINELLNLEEQFNCKLKKSEVIQWSIWFHDIIYDPTRSDNEELSAKLFIDFSND-VKLSEQVISDVNKYILATANHTKVKS--DEEKDTDLLYFLDMDLSILGTEESVY 153          
BLAST of NO05G00700 vs. NCBI_GenBank
Match: PIK41509.1 (hypothetical protein BSL78_21639 [Apostichopus japonicus])

HSP 1 Score: 98.2 bits (243), Expect = 4.000e-17
Identity = 55/130 (42.31%), Postives = 73/130 (56.15%), Query Frame = 0
Query:   60 WWQEIVQGYTNPVRRYHGLTHLQQMFGEMDRHAGRLARPDLVALAIFFHDLIYDPGSSTNEEDSAERFHLFAQEATRLPMKD-IKKVHTYILATKTHKPAPPPIEDDKDEDLLLFLDIDMSILGQPRQVY 189
            W Q+I   Y    R YH L H+  MF +MDR   +L   + V+ AI FHD+IYDP  S NE  SA+ F  FA E      KD ++KV  +ILAT++H      + D+   DLL FLD+D+ +LG P   Y
Sbjct:   23 WMQQIENYYNESTRYYHTLDHVCCMFKQMDRVLDKLEDTEAVSWAIVFHDIIYDPEKSNNELKSAQLFQTFAVECLNHWSKDRVQKVVDWILATQSH-----TVPDEHCSDLLFFLDLDLQVLGWPEADY 147          
BLAST of NO05G00700 vs. NCBI_GenBank
Match: WP_042269133.1 (hypothetical protein [Nonlabens ulvanivorans] >GAK74626.1 hypothetical protein JCM19296_204 [Nonlabens ulvanivorans])

HSP 1 Score: 97.8 bits (242), Expect = 5.200e-17
Identity = 53/138 (38.41%), Postives = 75/138 (54.35%), Query Frame = 0
Query:   47 TGASAPEEAVLDRWWQEIVQGYTNPVRRYHGLTHLQQMFGEMDRHAGRLARPDLVALAIFFHDLIYDPGSSTNEEDSAERFHLFAQEATRLPMKDIKKVHTYILATKTHKPAPPPIEDDKDEDLLLFLDIDMSILGQP 185
            T +   E   ++  W E+   YT   R YH LTHL+++F   D +   L +PDLVA AIF+HD+IY   +  NEEDSAE+  L     T L + D+  + ++ILATKTH            +D    +D D++ILG P
Sbjct:   11 TSSYINENQSIELLWNELESHYTESHRTYHNLTHLEELFEYYDTYKKELEKPDLVAFAIFYHDIIYGIWNKKNEEDSAEK-ALNVLNKTALSVNDLTTIESHILATKTHNAFL--------KDTQWMIDFDLAILGSP 139          
BLAST of NO05G00700 vs. NCBI_GenBank
Match: WP_042295041.1 (hypothetical protein [Nonlabens ulvanivorans] >GAL73797.1 hypothetical protein JCM19275_2644 [Nonlabens ulvanivorans])

HSP 1 Score: 97.8 bits (242), Expect = 5.200e-17
Identity = 53/138 (38.41%), Postives = 75/138 (54.35%), Query Frame = 0
Query:   47 TGASAPEEAVLDRWWQEIVQGYTNPVRRYHGLTHLQQMFGEMDRHAGRLARPDLVALAIFFHDLIYDPGSSTNEEDSAERFHLFAQEATRLPMKDIKKVHTYILATKTHKPAPPPIEDDKDEDLLLFLDIDMSILGQP 185
            T +   E   ++  W E+   YT   R YH LTHL+++F   D +   L +PDLVA AIF+HD+IY   +  NEEDSAE+  L     T L + D+  + ++ILATKTH            +D    +D D++ILG P
Sbjct:   11 TSSYINENESIELLWNELESHYTESHRTYHNLTHLEELFEYYDTYKKELEKPDLVAFAIFYHDIIYGIWNKKNEEDSAEK-ALNVLNKTALSVNDLTTIESHILATKTHNAFL--------KDTQWMIDFDLAILGSP 139          
BLAST of NO05G00700 vs. NCBI_GenBank
Match: SEC00545.1 (Predicted metal-dependent phosphohydrolase, HD superfamily [Tenacibaculum sp. MAR_2009_124])

HSP 1 Score: 97.4 bits (241), Expect = 6.800e-17
Identity = 51/135 (37.78%), Postives = 76/135 (56.30%), Query Frame = 0
Query:   54 EAVLDRWWQEIVQGYTNPVRRYHGLTHLQQMFGEMDRHAGRLARPDLVALAIFFHDLIYDPGSSTNEEDSAERFHLFAQEATRLPMKDIKKVHTYILATKTHKPAPPPIEDDKDEDLLLFLDIDMSILGQPRQVY 189
            E +++  W  I Q Y+   R YH L HLQ++F   + +  +L+ PD+V+ +IF+HD+IYD     NEE SAE F L   +   LP    K++   ILATKTH+         +  D    +D D+SILGQ +++Y
Sbjct:   18 ENIIEDLWSPIHQFYSKKDRAYHNLNHLQELFKYHELYKAQLSSPDIVSFSIFYHDIIYDIWKKDNEEKSAE-FALKELQKIHLPDHFYKEIKNQILATKTHQA--------ESSDAKFMIDFDLSILGQSKEIY 143          
BLAST of NO05G00700 vs. NCBI_GenBank
Match: WP_093669726.1 (hypothetical protein [Tenacibaculum sp. MAR_2009_124])

HSP 1 Score: 97.4 bits (241), Expect = 6.800e-17
Identity = 51/135 (37.78%), Postives = 76/135 (56.30%), Query Frame = 0
Query:   54 EAVLDRWWQEIVQGYTNPVRRYHGLTHLQQMFGEMDRHAGRLARPDLVALAIFFHDLIYDPGSSTNEEDSAERFHLFAQEATRLPMKDIKKVHTYILATKTHKPAPPPIEDDKDEDLLLFLDIDMSILGQPRQVY 189
            E +++  W  I Q Y+   R YH L HLQ++F   + +  +L+ PD+V+ +IF+HD+IYD     NEE SAE F L   +   LP    K++   ILATKTH+         +  D    +D D+SILGQ +++Y
Sbjct:    8 ENIIEDLWSPIHQFYSKKDRAYHNLNHLQELFKYHELYKAQLSSPDIVSFSIFYHDIIYDIWKKDNEEKSAE-FALKELQKIHLPDHFYKEIKNQILATKTHQA--------ESSDAKFMIDFDLSILGQSKEIY 133          
BLAST of NO05G00700 vs. NCBI_GenBank
Match: ELU04917.1 (hypothetical protein CAPTEDRAFT_94551 [Capitella teleta])

HSP 1 Score: 97.1 bits (240), Expect = 8.900e-17
Identity = 55/136 (40.44%), Postives = 77/136 (56.62%), Query Frame = 0
Query:   54 EAVLDRWWQEIVQGYTNPVRRYHGLTHLQQMFGEMDRHAGRLARPDLVALAIFFHDLIYDPGSSTNEEDSAERFHLFAQEATRLPMKDIKKVHTYILATKTHKPAPPPIED-DKDEDLLLFLDIDMSILGQPRQVY 189
            E+V   WW+ IVQ Y  P R YH +TH++ M    +R+   L  P LVAL IFFHD+IYD  +S NE+ SA+ +  +A++   +  + I KV  +I+ TK H       E     EDL   LD+DMS+LG   + Y
Sbjct:   20 ESVHQDWWRTIVQYYGEPHRHYHTMTHIESMLNLWNRNWNSLQEPCLVALGIFFHDIIYDVKASDNEDKSADLWVDYAKD-VGIEEESIAKVREWIIMTKEHSTDAHRTEGIYGSEDLHYLLDMDMSVLGMKPKEY 154          
BLAST of NO05G00700 vs. NCBI_GenBank
Match: WP_100377968.1 (hypothetical protein [Chryseobacterium geocarposphaerae] >PJJ62824.1 putative metal-dependent HD superfamily phosphohydrolase [Chryseobacterium geocarposphaerae])

HSP 1 Score: 97.1 bits (240), Expect = 8.900e-17
Identity = 50/144 (34.72%), Postives = 86/144 (59.72%), Query Frame = 0
Query:   49 ASAPEEAVLDRWWQEIVQGYTNPVRRYHGLTHLQQMFGEMDRHAGRLARPDLVALAIFFHDLIYDPGSSTNEEDSAERFHLFAQEATR---LPMKDIKKVHTYILATKTHKPAPPPIEDDKDEDLLLFLDIDMSILGQPRQVYM 190
            A +P++ ++++ W EI + Y+   R YH L HL+ +F E+D    R++    ++ ++F+HD+IYD  S +NEE SA+    FA+E  +   L   DI +++  ILATK H       ++  ++DL   LD D+SILG+  ++Y+
Sbjct:   13 AFSPDQELIEKLWSEIEKNYSQKSRHYHNLAHLESIFSELDAVNVRISNYLNISFSVFYHDVIYDSSSKSNEEKSAD----FAKERLQQLNLNETDISEIYHQILATKAH-------QNSDNKDLNYLLDADLSILGKDLEIYI 145          
The following BLAST results are available for this feature:
BLAST of NO05G00700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_089794900.18.100e-1837.23hypothetical protein [Chryseobacterium wanjuense] ... [more]
WP_096065703.18.100e-1839.29hypothetical protein [Psychrobacter sp. FDAARGOS_2... [more]
XP_636024.11.100e-1733.33predicted HD phosphohydrolase family protein [Dict... [more]
PIK41509.14.000e-1742.31hypothetical protein BSL78_21639 [Apostichopus jap... [more]
WP_042269133.15.200e-1738.41hypothetical protein [Nonlabens ulvanivorans] >GAK... [more]
WP_042295041.15.200e-1738.41hypothetical protein [Nonlabens ulvanivorans] >GAL... [more]
SEC00545.16.800e-1737.78Predicted metal-dependent phosphohydrolase, HD sup... [more]
WP_093669726.16.800e-1737.78hypothetical protein [Tenacibaculum sp. MAR_2009_1... [more]
ELU04917.18.900e-1740.44hypothetical protein CAPTEDRAFT_94551 [Capitella t... [more]
WP_100377968.18.900e-1734.72hypothetical protein [Chryseobacterium geocarposph... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003805NSK003805Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00700.1NO05G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583605gene_2862Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100348g2gene2262Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00700.1NO05G00700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00700 ID=NO05G00700|Name=NO05G00700|organism=Nannochloropsis oceanica|type=gene|length=2024bp
CAACCATTCACTCCAAACTTCATCGCAGAGATGGCCGCCGCCGCGCTTCG
AGAAGCTTCGCCTGGAATCAAGGTGGACACAGCGCTCCATGTCACGTTCT
CGTCCACTATGGAGGTGGGCTTGTATGTGCGGTGGAGGCGTGCATTGGAT
GGAGACGACGCCCGGACGACGGGAGCATCCGCACCCGAAGAGGCGGTCCT
CGACCGGTGGTGGCAAGAGATTGTACAGGGGTACACGAATCCGGTGCGAC
Ggtgagtgtggagaggcaatagataacgtgcgacacaaaattatgccact
ctcaatcgtccccttcctcagtccttgccatccacacacttcgcctctgt
gtctccaatagATACCACGGCCTGACCCACCTACAGCAAATGTTTGGGGA
AATGGACCGGCACGCCGGCAGACTGGCCCGCCCTGACCTGGTGGCACTCG
CCATCTTTTTCCACGAgtacgtacatgcgtaggtagatatgttcgagagc
tgcacggggaggtaatgacccttcatagaccactaactcctcttctttcc
acctctacgaacccatcagTCTGATTTATGACCCTGGCAGCAGCACGAAT
GAGGAGGACAGTGCGGAGCGTTTTCATCTTTTTGCGCAGGAGGCCACAAG
ATTAgtacgtttgggcagacactaagaatggggggctacggagaatggag
aagcaacgcatgcacacctttaagatgtttcgccctcccttcttctccgc
cttttcaccactcacagCCGATGAAAGACATCAAAAAAGTTCACACCTAT
ATCCTGGCAACCAAAACCCACAAGCCCGCCCCCCCTCCCATCGAGGACGA
CAAGGACGAGGACCTCCTCCTCTTCCTCGATATCGATATGAGCATTCTCG
GGCAGCCCCGACAGGTGTACATGATgtaagaaggaaaggagggagggcag
gaggataattagacaaaaaacgacggtcatgatgttttaattcttctatt
tctgatagTAAATTAGCCCCTTCTTTTCCTCCCCTAAAAGAGGAGGGAGG
ACGGTGCCTGCATGATTTCAGCATAGCGCAACCTTCGCCGGTAGCTCCTT
CTGAACCGTCGTTTGAGCACGAAATAGTTATTATAGCGAgtaattggtta
aaaggggggggggggggagagggagggagggaagggaaggatggaaggag
ggaatgaagggtctcaagttgaatttcatttcctaagtggctacgagcgg
tggaggaagtaggtttgacgcctcacccctccttctttttccctcttttt
gcagtattactgtaccttgtctttcctggtgtctccctactttgtttcta
agcttcctacttgacgtgctcggctctccttctcctcccctcctttcctc
ccttcctcccccttttgaaagGTACGCCGGTGCCATTCGCTCCGAGTACA
AACATGTACCTCGCCTCACCTACCTCACCAAACGCGCGGAAGTACTCTCC
TCCATGTTAGGGGAAGGAGGGGGAGGAAGATGGATTTATGCGTCAGATTT
CTATAGGCAGGAATTGGAGGAGCAGGCGAGGGACAATCTTCTGGGGGAGA
TTCAGATGTTGCGGGAAGGGGTCATTCCCTATGAGGAGCAGAAGGGGGAG
AAGGAGGGGGAGGGAGGGAAGGGGGAGATCTAGTAGTGCATGGCATTCGT
CGCAAAAAGGCACGGCTCCGACTGAGGCTATAGGCGTGGAGGGATGGATC
GTCTGAGATTGCAACTGAGATATGGAGGAATGGAGGAGTCGTGGGGAGGT
TAGAGCGGCGCCTACCAGATACTGATAAAGTCTGTGGACTATAATCCATA
TGAAATGCATGTCGACATGAAACTTAGGAGGGATGGTTGGGTTGTCCCCG
GGGAGGGGAGAGTATTTGATGAGGCGGACGAGGAGGGAGAGACGAAGGGG
GGAAGGGGGAGAGGGAAGGAGAAAGAAATGAGAAGGAATGATGACATATT
GCAGGAGGATGTTGCTTGTTATGA
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protein sequence of NO05G00700.1

>NO05G00700.1-protein ID=NO05G00700.1-protein|Name=NO05G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MAAAALREASPGIKVDTALHVTFSSTMEVGLYVRWRRALDGDDARTTGAS
APEEAVLDRWWQEIVQGYTNPVRRYHGLTHLQQMFGEMDRHAGRLARPDL
VALAIFFHDLIYDPGSSTNEEDSAERFHLFAQEATRLPMKDIKKVHTYIL
ATKTHKPAPPPIEDDKDEDLLLFLDIDMSILGQPRQVYMIKLAPSFPPLK
EEGGRCLHDFSIAQPSPVAPSEPSFEHEIVIIASTPVPFAPSTNMYLASP
TSPNARKYSPPC*
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Synonyms
Publications