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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:229529..231552 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G00700.1 vs.
Match: EWM28314.1 (hd phosphohydrolase family protein [Nannochloropsis gaditana]) HSP 1 Score: 215.3 bits (547), Expect = 2.200e-52 Identity = 108/178 (60.67%), Postives = 132/178 (74.16%), Query Frame = 0
Query: 13 IKVDTALHVTFSSTMEVGLYVRWRRALDGDDARTTGA-SAPEEAVLDRWWQEIVQGYTNPVRRYHGLTHLQQMFGEMDRHAGRLARPDLVALAIFFHDLIYDPGSSTNEEDSAERFHLFAQEATRLPMKDIKKVHTYILATKTHKPAPPPIEDDKDEDLLLFLDIDMSILGQPRQVYM 190
++ DT+L + F+S++EV LYVRWRRAL GD++ S+ E +RWWQEI++ YT RRYHGLTHLQQMFGEMDRH GRL RPD VALA+FFHD+ NEE SAERF+ FAQEATR+ +DI VH YILATKTH+ + P + D+DL LFLDIDMSILGQPR++YM
Sbjct: 9 VQTDTSLDIKFASSLEVALYVRWRRALSGDESIPEAEPSSTLEKARNRWWQEIIREYTKLERRYHGLTHLQQMFGEMDRHVGRLTRPDRVALAVFFHDI--------NEEKSAERFNAFAQEATRMSKEDIGVVHAYILATKTHQMSQSP---EVDDDLALFLDIDMSILGQPREIYM 175
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G00700.1 ID=NO05G00700.1|Name=NO05G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1333bp CAACCATTCACTCCAAACTTCATCGCAGAGATGGCCGCCGCCGCGCTTCG AGAAGCTTCGCCTGGAATCAAGGTGGACACAGCGCTCCATGTCACGTTCT CGTCCACTATGGAGGTGGGCTTGTATGTGCGGTGGAGGCGTGCATTGGAT GGAGACGACGCCCGGACGACGGGAGCATCCGCACCCGAAGAGGCGGTCCT CGACCGGTGGTGGCAAGAGATTGTACAGGGGTACACGAATCCGGTGCGAC GATACCACGGCCTGACCCACCTACAGCAAATGTTTGGGGAAATGGACCGG CACGCCGGCAGACTGGCCCGCCCTGACCTGGTGGCACTCGCCATCTTTTT CCACGATCTGATTTATGACCCTGGCAGCAGCACGAATGAGGAGGACAGTG CGGAGCGTTTTCATCTTTTTGCGCAGGAGGCCACAAGATTACCGATGAAA GACATCAAAAAAGTTCACACCTATATCCTGGCAACCAAAACCCACAAGCC CGCCCCCCCTCCCATCGAGGACGACAAGGACGAGGACCTCCTCCTCTTCC TCGATATCGATATGAGCATTCTCGGGCAGCCCCGACAGGTGTACATGATT AAATTAGCCCCTTCTTTTCCTCCCCTAAAAGAGGAGGGAGGACGGTGCCT GCATGATTTCAGCATAGCGCAACCTTCGCCGGTAGCTCCTTCTGAACCGT CGTTTGAGCACGAAATAGTTATTATAGCGAGTACGCCGGTGCCATTCGCT CCGAGTACAAACATGTACCTCGCCTCACCTACCTCACCAAACGCGCGGAA GTACTCTCCTCCATGTTAGGGGAAGGAGGGGGAGGAAGATGGATTTATGC GTCAGATTTCTATAGGCAGGAATTGGAGGAGCAGGCGAGGGACAATCTTC TGGGGGAGATTCAGATGTTGCGGGAAGGGGTCATTCCCTATGAGGAGCAG AAGGGGGAGAAGGAGGGGGAGGGAGGGAAGGGGGAGATCTAGTAGTGCAT GGCATTCGTCGCAAAAAGGCACGGCTCCGACTGAGGCTATAGGCGTGGAG GGATGGATCGTCTGAGATTGCAACTGAGATATGGAGGAATGGAGGAGTCG TGGGGAGGTTAGAGCGGCGCCTACCAGATACTGATAAAGTCTGTGGACTA TAATCCATATGAAATGCATGTCGACATGAAACTTAGGAGGGATGGTTGGG TTGTCCCCGGGGAGGGGAGAGTATTTGATGAGGCGGACGAGGAGGGAGAG ACGAAGGGGGGAAGGGGGAGAGGGAAGGAGAAAGAAATGAGAAGGAATGA TGACATATTGCAGGAGGATGTTGCTTGTTATGA back to topprotein sequence of NO05G00700.1 >NO05G00700.1-protein ID=NO05G00700.1-protein|Name=NO05G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp MAAAALREASPGIKVDTALHVTFSSTMEVGLYVRWRRALDGDDARTTGAS APEEAVLDRWWQEIVQGYTNPVRRYHGLTHLQQMFGEMDRHAGRLARPDL VALAIFFHDLIYDPGSSTNEEDSAERFHLFAQEATRLPMKDIKKVHTYIL ATKTHKPAPPPIEDDKDEDLLLFLDIDMSILGQPRQVYMIKLAPSFPPLK EEGGRCLHDFSIAQPSPVAPSEPSFEHEIVIIASTPVPFAPSTNMYLASP TSPNARKYSPPC* back to topmRNA from alignment at chr5:229529..231552- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G00700.1 ID=NO05G00700.1|Name=NO05G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2024bp|location=Sequence derived from alignment at chr5:229529..231552- (Nannochloropsis oceanica) CAACCATTCACTCCAAACTTCATCGCAGAGATGGCCGCCGCCGCGCTTCG
AGAAGCTTCGCCTGGAATCAAGGTGGACACAGCGCTCCATGTCACGTTCT
CGTCCACTATGGAGGTGGGCTTGTATGTGCGGTGGAGGCGTGCATTGGAT
GGAGACGACGCCCGGACGACGGGAGCATCCGCACCCGAAGAGGCGGTCCT
CGACCGGTGGTGGCAAGAGATTGTACAGGGGTACACGAATCCGGTGCGAC
GGTGAGTGTGGAGAGGCAATAGATAACGTGCGACACAAAATTATGCCACT
CTCAATCGTCCCCTTCCTCAGTCCTTGCCATCCACACACTTCGCCTCTGT
GTCTCCAATAGATACCACGGCCTGACCCACCTACAGCAAATGTTTGGGGA
AATGGACCGGCACGCCGGCAGACTGGCCCGCCCTGACCTGGTGGCACTCG
CCATCTTTTTCCACGAGTACGTACATGCGTAGGTAGATATGTTCGAGAGC
TGCACGGGGAGGTAATGACCCTTCATAGACCACTAACTCCTCTTCTTTCC
ACCTCTACGAACCCATCAGTCTGATTTATGACCCTGGCAGCAGCACGAAT
GAGGAGGACAGTGCGGAGCGTTTTCATCTTTTTGCGCAGGAGGCCACAAG
ATTAGTACGTTTGGGCAGACACTAAGAATGGGGGGCTACGGAGAATGGAG
AAGCAACGCATGCACACCTTTAAGATGTTTCGCCCTCCCTTCTTCTCCGC
CTTTTCACCACTCACAGCCGATGAAAGACATCAAAAAAGTTCACACCTAT
ATCCTGGCAACCAAAACCCACAAGCCCGCCCCCCCTCCCATCGAGGACGA
CAAGGACGAGGACCTCCTCCTCTTCCTCGATATCGATATGAGCATTCTCG
GGCAGCCCCGACAGGTGTACATGATGTAAGAAGGAAAGGAGGGAGGGCAG
GAGGATAATTAGACAAAAAACGACGGTCATGATGTTTTAATTCTTCTATT
TCTGATAGTAAATTAGCCCCTTCTTTTCCTCCCCTAAAAGAGGAGGGAGG
ACGGTGCCTGCATGATTTCAGCATAGCGCAACCTTCGCCGGTAGCTCCTT
CTGAACCGTCGTTTGAGCACGAAATAGTTATTATAGCGAGTAATTGGTTA
AAAGGGGGGGGGGGGGGAGAGGGAGGGAGGGAAGGGAAGGATGGAAGGAG
GGAATGAAGGGTCTCAAGTTGAATTTCATTTCCTAAGTGGCTACGAGCGG
TGGAGGAAGTAGGTTTGACGCCTCACCCCTCCTTCTTTTTCCCTCTTTTT
GCAGTATTACTGTACCTTGTCTTTCCTGGTGTCTCCCTACTTTGTTTCTA
AGCTTCCTACTTGACGTGCTCGGCTCTCCTTCTCCTCCCCTCCTTTCCTC
CCTTCCTCCCCCTTTTGAAAGGTACGCCGGTGCCATTCGCTCCGAGTACA
AACATGTACCTCGCCTCACCTACCTCACCAAACGCGCGGAAGTACTCTCC
TCCATGTTAGGGGAAGGAGGGGGAGGAAGATGGATTTATGCGTCAGATTT
CTATAGGCAGGAATTGGAGGAGCAGGCGAGGGACAATCTTCTGGGGGAGA
TTCAGATGTTGCGGGAAGGGGTCATTCCCTATGAGGAGCAGAAGGGGGAG
AAGGAGGGGGAGGGAGGGAAGGGGGAGATCTAGTAGTGCATGGCATTCGT
CGCAAAAAGGCACGGCTCCGACTGAGGCTATAGGCGTGGAGGGATGGATC
GTCTGAGATTGCAACTGAGATATGGAGGAATGGAGGAGTCGTGGGGAGGT
TAGAGCGGCGCCTACCAGATACTGATAAAGTCTGTGGACTATAATCCATA
TGAAATGCATGTCGACATGAAACTTAGGAGGGATGGTTGGGTTGTCCCCG
GGGAGGGGAGAGTATTTGATGAGGCGGACGAGGAGGGAGAGACGAAGGGG
GGAAGGGGGAGAGGGAAGGAGAAAGAAATGAGAAGGAATGATGACATATT
GCAGGAGGATGTTGCTTGTTATGA back to topCoding sequence (CDS) from alignment at chr5:229529..231552- >NO05G00700.1 ID=NO05G00700.1|Name=NO05G00700.1|organism=Nannochloropsis oceanica|type=CDS|length=789bp|location=Sequence derived from alignment at chr5:229529..231552- (Nannochloropsis oceanica) ATGGCCGCCGCCGCGCTTCGAGAAGCTTCGCCTGGAATCAAGGTGGACAC AGCGCTCCATGTCACGTTCTCGTCCACTATGGAGGTGGGCTTGTATGTGC GGTGGAGGCGTGCATTGGATGGAGACGACGCCCGGACGACGGGAGCATCC GCACCCGAAGAGGCGGTCCTCGACCGGTGGTGGCAAGAGATTGTACAGGG GTACACGAATCCGGTGCGACGATACCACGGCCTGACCCACCTACAGCAAA TGTTTGGGGAAATGGACCGGCACGCCGGCAGACTGGCCCGCCCTGACCTG GTGGCACTCGCCATCTTTTTCCACGATCTGATTTATGACCCTGGCAGCAG CACGAATGAGGAGGACAGTGCGGAGCGTTTTCATCTTTTTGCGCAGGAGG CCACAAGATTACCGATGAAAGACATCAAAAAAGTTCACACCTATATCCTG GCAACCAAAACCCACAAGCCCGCCCCCCCTCCCATCGAGGACGACAAGGA CGAGGACCTCCTCCTCTTCCTCGATATCGATATGAGCATTCTCGGGCAGC CCCGACAGGTGTACATGATTAAATTAGCCCCTTCTTTTCCTCCCCTAAAA GAGGAGGGAGGACGGTGCCTGCATGATTTCAGCATAGCGCAACCTTCGCC GGTAGCTCCTTCTGAACCGTCGTTTGAGCACGAAATAGTTATTATAGCGA GTACGCCGGTGCCATTCGCTCCGAGTACAAACATGTACCTCGCCTCACCT ACCTCACCAAACGCGCGGAAGTACTCTCCTCCATGTTAG back to top
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