NO05G00700.1, NO05G00700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00700.1
Unique NameNO05G00700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1333
Alignment locationchr5:229529..231552 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:229529..231552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G00700.1 vs.
Match: EWM28314.1 (hd phosphohydrolase family protein [Nannochloropsis gaditana])

HSP 1 Score: 215.3 bits (547), Expect = 2.200e-52
Identity = 108/178 (60.67%), Postives = 132/178 (74.16%), Query Frame = 0
Query:   13 IKVDTALHVTFSSTMEVGLYVRWRRALDGDDARTTGA-SAPEEAVLDRWWQEIVQGYTNPVRRYHGLTHLQQMFGEMDRHAGRLARPDLVALAIFFHDLIYDPGSSTNEEDSAERFHLFAQEATRLPMKDIKKVHTYILATKTHKPAPPPIEDDKDEDLLLFLDIDMSILGQPRQVYM 190
            ++ DT+L + F+S++EV LYVRWRRAL GD++      S+  E   +RWWQEI++ YT   RRYHGLTHLQQMFGEMDRH GRL RPD VALA+FFHD+        NEE SAERF+ FAQEATR+  +DI  VH YILATKTH+ +  P   + D+DL LFLDIDMSILGQPR++YM
Sbjct:    9 VQTDTSLDIKFASSLEVALYVRWRRALSGDESIPEAEPSSTLEKARNRWWQEIIREYTKLERRYHGLTHLQQMFGEMDRHVGRLTRPDRVALAVFFHDI--------NEEKSAERFNAFAQEATRMSKEDIGVVHAYILATKTHQMSQSP---EVDDDLALFLDIDMSILGQPREIYM 175          
The following BLAST results are available for this feature:
BLAST of NO05G00700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28314.12.200e-5260.67hd phosphohydrolase family protein [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00700NO05G00700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00700.1NO05G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00700.1.cds1NO05G00700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00700.1.cds2NO05G00700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00700.1.cds3NO05G00700.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00700.1.cds4NO05G00700.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00700.1.cds5NO05G00700.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00700.1.cds6NO05G00700.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00700.1 ID=NO05G00700.1|Name=NO05G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1333bp
CAACCATTCACTCCAAACTTCATCGCAGAGATGGCCGCCGCCGCGCTTCG
AGAAGCTTCGCCTGGAATCAAGGTGGACACAGCGCTCCATGTCACGTTCT
CGTCCACTATGGAGGTGGGCTTGTATGTGCGGTGGAGGCGTGCATTGGAT
GGAGACGACGCCCGGACGACGGGAGCATCCGCACCCGAAGAGGCGGTCCT
CGACCGGTGGTGGCAAGAGATTGTACAGGGGTACACGAATCCGGTGCGAC
GATACCACGGCCTGACCCACCTACAGCAAATGTTTGGGGAAATGGACCGG
CACGCCGGCAGACTGGCCCGCCCTGACCTGGTGGCACTCGCCATCTTTTT
CCACGATCTGATTTATGACCCTGGCAGCAGCACGAATGAGGAGGACAGTG
CGGAGCGTTTTCATCTTTTTGCGCAGGAGGCCACAAGATTACCGATGAAA
GACATCAAAAAAGTTCACACCTATATCCTGGCAACCAAAACCCACAAGCC
CGCCCCCCCTCCCATCGAGGACGACAAGGACGAGGACCTCCTCCTCTTCC
TCGATATCGATATGAGCATTCTCGGGCAGCCCCGACAGGTGTACATGATT
AAATTAGCCCCTTCTTTTCCTCCCCTAAAAGAGGAGGGAGGACGGTGCCT
GCATGATTTCAGCATAGCGCAACCTTCGCCGGTAGCTCCTTCTGAACCGT
CGTTTGAGCACGAAATAGTTATTATAGCGAGTACGCCGGTGCCATTCGCT
CCGAGTACAAACATGTACCTCGCCTCACCTACCTCACCAAACGCGCGGAA
GTACTCTCCTCCATGTTAGGGGAAGGAGGGGGAGGAAGATGGATTTATGC
GTCAGATTTCTATAGGCAGGAATTGGAGGAGCAGGCGAGGGACAATCTTC
TGGGGGAGATTCAGATGTTGCGGGAAGGGGTCATTCCCTATGAGGAGCAG
AAGGGGGAGAAGGAGGGGGAGGGAGGGAAGGGGGAGATCTAGTAGTGCAT
GGCATTCGTCGCAAAAAGGCACGGCTCCGACTGAGGCTATAGGCGTGGAG
GGATGGATCGTCTGAGATTGCAACTGAGATATGGAGGAATGGAGGAGTCG
TGGGGAGGTTAGAGCGGCGCCTACCAGATACTGATAAAGTCTGTGGACTA
TAATCCATATGAAATGCATGTCGACATGAAACTTAGGAGGGATGGTTGGG
TTGTCCCCGGGGAGGGGAGAGTATTTGATGAGGCGGACGAGGAGGGAGAG
ACGAAGGGGGGAAGGGGGAGAGGGAAGGAGAAAGAAATGAGAAGGAATGA
TGACATATTGCAGGAGGATGTTGCTTGTTATGA
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protein sequence of NO05G00700.1

>NO05G00700.1-protein ID=NO05G00700.1-protein|Name=NO05G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MAAAALREASPGIKVDTALHVTFSSTMEVGLYVRWRRALDGDDARTTGAS
APEEAVLDRWWQEIVQGYTNPVRRYHGLTHLQQMFGEMDRHAGRLARPDL
VALAIFFHDLIYDPGSSTNEEDSAERFHLFAQEATRLPMKDIKKVHTYIL
ATKTHKPAPPPIEDDKDEDLLLFLDIDMSILGQPRQVYMIKLAPSFPPLK
EEGGRCLHDFSIAQPSPVAPSEPSFEHEIVIIASTPVPFAPSTNMYLASP
TSPNARKYSPPC*
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mRNA from alignment at chr5:229529..231552-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00700.1 ID=NO05G00700.1|Name=NO05G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2024bp|location=Sequence derived from alignment at chr5:229529..231552- (Nannochloropsis oceanica)
CAACCATTCACTCCAAACTTCATCGCAGAGATGGCCGCCGCCGCGCTTCG AGAAGCTTCGCCTGGAATCAAGGTGGACACAGCGCTCCATGTCACGTTCT CGTCCACTATGGAGGTGGGCTTGTATGTGCGGTGGAGGCGTGCATTGGAT GGAGACGACGCCCGGACGACGGGAGCATCCGCACCCGAAGAGGCGGTCCT CGACCGGTGGTGGCAAGAGATTGTACAGGGGTACACGAATCCGGTGCGAC GGTGAGTGTGGAGAGGCAATAGATAACGTGCGACACAAAATTATGCCACT CTCAATCGTCCCCTTCCTCAGTCCTTGCCATCCACACACTTCGCCTCTGT GTCTCCAATAGATACCACGGCCTGACCCACCTACAGCAAATGTTTGGGGA AATGGACCGGCACGCCGGCAGACTGGCCCGCCCTGACCTGGTGGCACTCG CCATCTTTTTCCACGAGTACGTACATGCGTAGGTAGATATGTTCGAGAGC TGCACGGGGAGGTAATGACCCTTCATAGACCACTAACTCCTCTTCTTTCC ACCTCTACGAACCCATCAGTCTGATTTATGACCCTGGCAGCAGCACGAAT GAGGAGGACAGTGCGGAGCGTTTTCATCTTTTTGCGCAGGAGGCCACAAG ATTAGTACGTTTGGGCAGACACTAAGAATGGGGGGCTACGGAGAATGGAG AAGCAACGCATGCACACCTTTAAGATGTTTCGCCCTCCCTTCTTCTCCGC CTTTTCACCACTCACAGCCGATGAAAGACATCAAAAAAGTTCACACCTAT ATCCTGGCAACCAAAACCCACAAGCCCGCCCCCCCTCCCATCGAGGACGA CAAGGACGAGGACCTCCTCCTCTTCCTCGATATCGATATGAGCATTCTCG GGCAGCCCCGACAGGTGTACATGATGTAAGAAGGAAAGGAGGGAGGGCAG GAGGATAATTAGACAAAAAACGACGGTCATGATGTTTTAATTCTTCTATT TCTGATAGTAAATTAGCCCCTTCTTTTCCTCCCCTAAAAGAGGAGGGAGG ACGGTGCCTGCATGATTTCAGCATAGCGCAACCTTCGCCGGTAGCTCCTT CTGAACCGTCGTTTGAGCACGAAATAGTTATTATAGCGAGTAATTGGTTA AAAGGGGGGGGGGGGGGAGAGGGAGGGAGGGAAGGGAAGGATGGAAGGAG GGAATGAAGGGTCTCAAGTTGAATTTCATTTCCTAAGTGGCTACGAGCGG TGGAGGAAGTAGGTTTGACGCCTCACCCCTCCTTCTTTTTCCCTCTTTTT GCAGTATTACTGTACCTTGTCTTTCCTGGTGTCTCCCTACTTTGTTTCTA AGCTTCCTACTTGACGTGCTCGGCTCTCCTTCTCCTCCCCTCCTTTCCTC CCTTCCTCCCCCTTTTGAAAGGTACGCCGGTGCCATTCGCTCCGAGTACA AACATGTACCTCGCCTCACCTACCTCACCAAACGCGCGGAAGTACTCTCC TCCATGTTAGGGGAAGGAGGGGGAGGAAGATGGATTTATGCGTCAGATTT CTATAGGCAGGAATTGGAGGAGCAGGCGAGGGACAATCTTCTGGGGGAGA TTCAGATGTTGCGGGAAGGGGTCATTCCCTATGAGGAGCAGAAGGGGGAG AAGGAGGGGGAGGGAGGGAAGGGGGAGATCTAGTAGTGCATGGCATTCGT CGCAAAAAGGCACGGCTCCGACTGAGGCTATAGGCGTGGAGGGATGGATC GTCTGAGATTGCAACTGAGATATGGAGGAATGGAGGAGTCGTGGGGAGGT TAGAGCGGCGCCTACCAGATACTGATAAAGTCTGTGGACTATAATCCATA TGAAATGCATGTCGACATGAAACTTAGGAGGGATGGTTGGGTTGTCCCCG GGGAGGGGAGAGTATTTGATGAGGCGGACGAGGAGGGAGAGACGAAGGGG GGAAGGGGGAGAGGGAAGGAGAAAGAAATGAGAAGGAATGATGACATATT GCAGGAGGATGTTGCTTGTTATGA
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Coding sequence (CDS) from alignment at chr5:229529..231552-

>NO05G00700.1 ID=NO05G00700.1|Name=NO05G00700.1|organism=Nannochloropsis oceanica|type=CDS|length=789bp|location=Sequence derived from alignment at chr5:229529..231552- (Nannochloropsis oceanica)
ATGGCCGCCGCCGCGCTTCGAGAAGCTTCGCCTGGAATCAAGGTGGACAC
AGCGCTCCATGTCACGTTCTCGTCCACTATGGAGGTGGGCTTGTATGTGC
GGTGGAGGCGTGCATTGGATGGAGACGACGCCCGGACGACGGGAGCATCC
GCACCCGAAGAGGCGGTCCTCGACCGGTGGTGGCAAGAGATTGTACAGGG
GTACACGAATCCGGTGCGACGATACCACGGCCTGACCCACCTACAGCAAA
TGTTTGGGGAAATGGACCGGCACGCCGGCAGACTGGCCCGCCCTGACCTG
GTGGCACTCGCCATCTTTTTCCACGATCTGATTTATGACCCTGGCAGCAG
CACGAATGAGGAGGACAGTGCGGAGCGTTTTCATCTTTTTGCGCAGGAGG
CCACAAGATTACCGATGAAAGACATCAAAAAAGTTCACACCTATATCCTG
GCAACCAAAACCCACAAGCCCGCCCCCCCTCCCATCGAGGACGACAAGGA
CGAGGACCTCCTCCTCTTCCTCGATATCGATATGAGCATTCTCGGGCAGC
CCCGACAGGTGTACATGATTAAATTAGCCCCTTCTTTTCCTCCCCTAAAA
GAGGAGGGAGGACGGTGCCTGCATGATTTCAGCATAGCGCAACCTTCGCC
GGTAGCTCCTTCTGAACCGTCGTTTGAGCACGAAATAGTTATTATAGCGA
GTACGCCGGTGCCATTCGCTCCGAGTACAAACATGTACCTCGCCTCACCT
ACCTCACCAAACGCGCGGAAGTACTCTCCTCCATGTTAG
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Synonyms
Publications