NO05G00570, NO05G00570 (gene) Nannochloropsis oceanica

Overview
NameNO05G00570
Unique NameNO05G00570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1500
Alignment locationchr5:195921..197420 -

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Properties
Property NameValue
DescriptionIndole-3-glycerol phosphate synthase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:195921..197420 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004425indole-3-glycerol-phosphate synthase activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR011060RibuloseP-bd_barrel
IPR013798Indole-3-glycerol_P_synth
Homology
[Close]
BLAST of NO05G00570 vs. NCBI_GenBank
Match: WP_075865278.1 (indole-3-glycerol phosphate synthase TrpC [Carboxydothermus islandicus] >GAV25109.1 indole-3-glycerol-phosphate synthase [Carboxydothermus islandicus])

HSP 1 Score: 65.9 bits (159), Expect = 3.000e-7
Identity = 61/217 (28.11%), Postives = 93/217 (42.86%), Query Frame = 0 
Query:  124 LQKRHGNTLTVIAEYWRKAPF-SFLGSVLEPKAYSEIYRKAGASVIAINVD--------------------PLTASDVVVDPVQISRAKLAGAAGITLRYSLNPPEATTALIKTTHALGMEPLVFVKSATEAAAATAAGARLLFVYG---CTRARGIEMRKELPLLLPDGEEGIMVGFDLRRPREFQYGLNEVEDAWVLRDEGFHSVYASNLLFQTP 317
            L+++    + VIAE  + +P    L   LEP+  +  Y K+GA+ I++  +                    PL   D ++DP QI  AK+ GA  + L  SL   E    +IK T  LGME LV   S  E   A  AGARL+ +      T    I++  +L  +L   E G+++          + G+   ED   L   G+H +     L + P
Sbjct:   47 LREKAKGKVGVIAEIKKASPSKGVLREQLEPEEVARGYAKSGAAAISVLTEEDYFLGSPEYLNAVRAVVSLPLLRKDFIIDPYQIYEAKVLGADAVLLITSLLAAEELKEMIKITEGLGMEALVEAHSLEEVEKALTAGARLIGINNRDLRTFTTKIDVSLKLAPVLK--EAGVVM--------VSESGIRSKEDIKALMTAGYHGILIGEALMRAP 253
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BLAST of NO05G00570 vs. NCBI_GenBank
Match: OEU11195.1 (hypothetical protein FRACYDRAFT_270934 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 65.5 bits (158), Expect = 4.000e-7
Identity = 53/193 (27.46%), Postives = 92/193 (47.67%), Query Frame = 0 
Query:  174 PLTASDVVVDPVQISRAKLAGAAGITLRYSLNPPEATTALIKTTHALGMEPLVFVKSATEAAAATAA----GARLLFVYGCTRARG-IEMRKELPLLLPDGEEGIMVGFDLRRPREFQYGLNEVEDAWVLRDEGFHSVYASNLLFQTPLDDVVGPSAVIKALRAKACHFMVDPLDWIEKAVTEGTKETLGELL 362
            P+  SDV+VD +QI+++ + G   + L Y L   +    LI    A+ +E ++ V+S  EA +         + +L V       G +++  EL  +  +  E  +        R  Q GL EVE+ W  RD+GF+  + S+ L++        P A+IK++ AK+      P+   +    EG KE LG+++
Sbjct:   28 PIINSDVIVDEIQIAQSAVIGVNAVLLDYELLGIDTLKKLIVACRAVELEIIIAVRSKEEAQSTIDVIQDYTSFMLSVINMDGVTGKLDIISELQNMPNENSEQKITTIANILHRSDQ-GLAEVEECWSCRDKGFNCAWISDALYKAGNSASEYPGAIIKSMAAKSSVRWASPV--AKSGRGEGAKEYLGDIM 217
[Close]
BLAST of NO05G00570 vs. NCBI_GenBank
Match: WP_011344488.1 (indole-3-glycerol phosphate synthase TrpC [Carboxydothermus hydrogenoformans] >Q3ABS1.1 RecName: Full=Indole-3-glycerol phosphate synthase; Short=IGPS >ABB15044.1 indole-3-glycerol phosphate synthase [Carboxydothermus hydrogenoformans Z-2901])

HSP 1 Score: 64.7 bits (156), Expect = 6.800e-7
Identity = 58/207 (28.02%), Postives = 90/207 (43.48%), Query Frame = 0 
Query:  134 VIAEYWRKAPF-SFLGSVLEPKAYSEIYRKAGASVIAINVD--------------------PLTASDVVVDPVQISRAKLAGAAGITLRYSLNPPEATTALIKTTHALGMEPLVFVKSATEAAAATAAGARLLFVYG---CTRARGIEMRKELPLLLPDGEEGIMVGFDLRRPREFQYGLNEVEDAWVLRDEGFHSVYASNLLFQTP 317
            VIAE  + +P    L   L+P+  +++Y K+GA+ I++  +                    P+   D ++DP QI  AK+ GA  + L  SL        +IK T  LGME LV   S  E   A  AGARL+ +      T A  I++  +L  +L   E G+++          + G+   ED   L   G+H +     L + P
Sbjct:   57 VIAEIKKASPSKGVLREQLDPEEVAQVYAKSGAAAISVLTEEDYFLGSPEYLKAVRAVVSLPILRKDFILDPYQIYEAKVLGADAVLLITSLLASVELKEMIKITEGLGMEALVEAHSLEEVEKALTAGARLIGINNRDLRTFATNIDVSLKLAPVLK--EAGVVM--------VSESGIRSKEDIKALMTAGYHGILIGEALVRAP 253
[Close]
BLAST of NO05G00570 vs. NCBI_GenBank
Match: WP_004012331.1 (indole-3-glycerol-phosphate synthase [Mobiluncus mulieris] >EEJ54434.1 indole-3-glycerol phosphate synthase [Mobiluncus mulieris ATCC 35243] >EEZ91968.1 indole-3-glycerol phosphate synthase [Mobiluncus mulieris 28-1] >EFM45666.1 indole-3-glycerol phosphate synthase [Mobiluncus mulieris ATCC 35239] >EFN93033.1 indole-3-glycerol phosphate synthase [Mobiluncus mulieris FB024-16] >PNL43780.1 indole-3-glycerol-phosphate synthase TrpC [Mobiluncus mulieris])

HSP 1 Score: 64.3 bits (155), Expect = 8.800e-7
Identity = 57/191 (29.84%), Postives = 85/191 (44.50%), Query Frame = 0 
Query:   86 EKEVAAFKAALPRAHPIFATLEDLPPSPSNQSQILYKALQKRHGNTLTVIAEYWRKAPFS-FLGSVLEPKAYSEIYRKAGASVIAINVD--------------------PLTASDVVVDPVQISRAKLAGAAGITLRYSLNPPEATTALIKTTHALGMEPLVFVKSATEAAAATAAGARLLFVYGCTRARG 256
            + EVA  +A LP        L  L PSP N + +L+      H   + V+ E  R+ P + FL  + +P A +  Y   GA  +++  +                    PL   + VV P QI  +++ GA  + L  +L  P     L++ T +LGMEPLV   S  EA  A AAGAR++ +    R  G
Sbjct:   12 QTEVALREATLPL--EALRELTHLAPSPQNGAAVLHS-----HPGFVAVMGEIKRQTPTAGFLDPIEDPAALAREYVAGGAVAVSVVTETPNYLGTLDDFKAVRRAVEVPLLRKEYVVTPYQIHESRVLGADMVLLMVALLEPLVLGLLVERTQSLGMEPLVECHSRLEARQAIAAGARIIGLNARNRETG 195
The following BLAST results are available for this feature:
BLAST of NO05G00570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 14
Match NameE-valueIdentityDescription
WP_075865278.13.000e-728.11indole-3-glycerol phosphate synthase TrpC [Carboxy... [more]
OEU11195.14.000e-727.46hypothetical protein FRACYDRAFT_270934 [Fragilario... [more]
WP_011344488.16.800e-728.02indole-3-glycerol phosphate synthase TrpC [Carboxy... [more]
WP_004012331.18.800e-729.84indole-3-glycerol-phosphate synthase [Mobiluncus m... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003824NSK003824Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00570.1NO05G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100109g9gene2250Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00570.1NO05G00570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00570 ID=NO05G00570|Name=NO05G00570|organism=Nannochloropsis oceanica|type=gene|length=1500bp
ATGCTGGGGAGACGAAAAGCTAGGGTACCAGCCCTGGCATTGACTTTCCT
GGCAGCCTGTACCCAAGCCTTCATCAGAATACCATCACCAGCATCAGgta
agtcgtatcgacgtgtgcgacgtgcgttgtgcgccggttggtctttccgt
gctgtcctgagtgtgcgaatgagaatcctccacttccgtgcgttctgcct
ctctcttcaccctcttcaatcatcaacagGCAGAAGAGCCATCTCGCCAC
CACCACAACCCCCAGTCCTCAGCGCACCACTCCACACGACCCTCTTCGCC
TCTTCCGATGCCAACAGCCCCACTTCCACCTTTCCTGCACCTGCAGCCGG
AAGCGGGATGACCGAAGTCCTGGCCCGCAAAGCCAAAGAAAAAGAGGTCG
CTGCCTTCAAAGCCGCCCTGCCTCGCGCCCACCCCATCTTTGCCACTCTC
GAAGACCTGCCGCCCTCCCCCTCTAATCAATCCCAAATCCTGTACAAGGC
CCTTCAAAAACGCCACGGCAATACCTTGACCGTCATTGCCGAGTACTGGC
GCAAAGCACCCTTCTCCTTCTTGGGCTCCGTGCTGGAACCCAAAGCATAC
AGCGAGATTTACCGGAAAGCGGGTGCCAGCGTCATTGCGATTAATGTTGA
CCCTCTTACCGgtgggtctctccatgaggatatcgcccagatggtggcag
agcaggaggcggcgaggggggggatgtgagtgcccccatcccgatcgtag
CCTCGGATGTGGTGGTTGACCCTGTTCAGATTTCGAGGGCCAAGCTTGCT
GGAGCTGCAGgcacgtcgtagtcaggcttgttatgtttctcgtcccttaa
gtgctcgtcttctcttttgtcccctctccctcccttcggctgcttccagc
gatttgtgcagctggatattgattgagcatctcttaggcagtcactcaac
ccttccctccctccctccctccttccctccctctctccctccctcgatag
GGATCACCCTCCGCTACTCGCTCAATCCTCCCGAGGCCACCACTGCTCTC
ATCAAGACGACCCATGCCTTGGGAATGGAACCTCTGGTCTTCGTGAAGAG
CGCAACGGAAGCAGCAGCAGCAACAGCAGCAGGAGCCCGGTTATTGTTTG
TGTACGGGTGCACACGGGCACGAGGGATCGAGATGCGGAAGGAATTACCG
CTGCTGCTCCCCGACGGAGAGGAAGGGATTATGGTGGGATTTGATCTGAG
ACGACCCCGTGAATTTCAGTACGGGTTGAATGAGGTGGAGGACGCGTGGG
TGTTGAGAGACGAAGGATTTCACAGCGTCTATGCCTCTAATTTGCTGTTT
CAGACGCCGCTGGATGATGTGGTGGGGCCCAGCGCGGTGATCAAGGCGTT
GCGGGCCAAGGCATGTCATTTTATGGTGGACCCACTGGACTGGATCGAGA
AGGCAGTGACGGAGGGCACGAAGGAGACGCTGGGGGAGTTGTTGGCCTAG
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protein sequence of NO05G00570.1

>NO05G00570.1-protein ID=NO05G00570.1-protein|Name=NO05G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MLGRRKARVPALALTFLAACTQAFIRIPSPASGRRAISPPPQPPVLSAPL
HTTLFASSDANSPTSTFPAPAAGSGMTEVLARKAKEKEVAAFKAALPRAH
PIFATLEDLPPSPSNQSQILYKALQKRHGNTLTVIAEYWRKAPFSFLGSV
LEPKAYSEIYRKAGASVIAINVDPLTASDVVVDPVQISRAKLAGAAGITL
RYSLNPPEATTALIKTTHALGMEPLVFVKSATEAAAATAAGARLLFVYGC
TRARGIEMRKELPLLLPDGEEGIMVGFDLRRPREFQYGLNEVEDAWVLRD
EGFHSVYASNLLFQTPLDDVVGPSAVIKALRAKACHFMVDPLDWIEKAVT
EGTKETLGELLA*
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Synonyms
Publications