NO05G00570.1, NO05G00570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00570.1
Unique NameNO05G00570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1089
Alignment locationchr5:195921..197420 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:195921..197420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G00570.1 vs.
Match: EWM28323.1 (indole-3-glycerol-phosphate synthase [Nannochloropsis gaditana])

HSP 1 Score: 429.5 bits (1103), Expect = 1.000e-116
Identity = 224/339 (66.08%), Postives = 264/339 (77.88%), Query Frame = 0
Query:   56 ASSDANSPTSTFPAPAAGSGMTEVLARKAKEKEVAAFKAALPRAHPIFATLEDL--PPSPSNQSQILYKALQKRHGNTLTVIAEYWRKAPFSFLGSVLEPKAYSEIYRKAGASVIAINVD------------------------------PLTASDVVVDPVQISRAKLAGAAGITLRYSLNPPEATTALIKTTHALGMEPLVFVKSATEAAAATAAGARLLFVYGCTRARGIEMRKELPLLLPDGEEGIMVGFDLRRPREFQYGLNEVEDAWVLRDEGFHSVYASNLLFQTPLDDVVGPSAVIKALRAKACHFMVDPLDWIEKAVTEGTKETLGELLA 363
            +SSD  S         +G+ MT+ LARKAKEKE+AAFKAALPRAHPIF  LEDL  PPS +N+S  LY+ L+ RHGNTLTV+AEYWRKAPF+FLGSVLEPK YSEIYR+AGAS IA+NVD                              P+ A DVVVDPVQISRAKLAGAAGITLR+SL PPE T +LI+T  ALGMEP+VFV+++TEAAAA  AGAR++++YGC+RA+ +EMR++L       ++G+M+GFDLRRPREFQYGLNEVEDAW+LRD GFHSVY SNLLFQTPLDDV+GPS+VIKALRAKAC F+VDPLDWIEK+V EG+KETLGELLA
Sbjct:   86 SSSDLPSSLGETQLGPSGNAMTDTLARKAKEKEIAAFKAALPRAHPIFTMLEDLSFPPSLANRSDALYQNLRHRHGNTLTVVAEYWRKAPFAFLGSVLEPKEYSEIYREAGASAIAVNVDSVGGGCAHEDIAEMVAEQQAAILEDVTAPVPIVAMDVVVDPVQISRAKLAGAAGITLRFSLTPPEVTLSLIQTALALGMEPMVFVRNSTEAAAAVGAGARVVYLYGCSRAQAVEMRQDLD------QDGVMIGFDLRRPREFQYGLNEVEDAWILRDAGFHSVYVSNLLFQTPLDDVLGPSSVIKALRAKACVFLVDPLDWIEKSVMEGSKETLGELLA 418          
The following BLAST results are available for this feature:
BLAST of NO05G00570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28323.11.000e-11666.08indole-3-glycerol-phosphate synthase [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00570NO05G00570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00570.1NO05G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00570.1.cds1NO05G00570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00570.1.cds2NO05G00570.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00570.1.cds3NO05G00570.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00570.1.cds4NO05G00570.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00570.1 ID=NO05G00570.1|Name=NO05G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1089bp
ATGCTGGGGAGACGAAAAGCTAGGGTACCAGCCCTGGCATTGACTTTCCT
GGCAGCCTGTACCCAAGCCTTCATCAGAATACCATCACCAGCATCAGGCA
GAAGAGCCATCTCGCCACCACCACAACCCCCAGTCCTCAGCGCACCACTC
CACACGACCCTCTTCGCCTCTTCCGATGCCAACAGCCCCACTTCCACCTT
TCCTGCACCTGCAGCCGGAAGCGGGATGACCGAAGTCCTGGCCCGCAAAG
CCAAAGAAAAAGAGGTCGCTGCCTTCAAAGCCGCCCTGCCTCGCGCCCAC
CCCATCTTTGCCACTCTCGAAGACCTGCCGCCCTCCCCCTCTAATCAATC
CCAAATCCTGTACAAGGCCCTTCAAAAACGCCACGGCAATACCTTGACCG
TCATTGCCGAGTACTGGCGCAAAGCACCCTTCTCCTTCTTGGGCTCCGTG
CTGGAACCCAAAGCATACAGCGAGATTTACCGGAAAGCGGGTGCCAGCGT
CATTGCGATTAATGTTGACCCTCTTACCGCCTCGGATGTGGTGGTTGACC
CTGTTCAGATTTCGAGGGCCAAGCTTGCTGGAGCTGCAGGGATCACCCTC
CGCTACTCGCTCAATCCTCCCGAGGCCACCACTGCTCTCATCAAGACGAC
CCATGCCTTGGGAATGGAACCTCTGGTCTTCGTGAAGAGCGCAACGGAAG
CAGCAGCAGCAACAGCAGCAGGAGCCCGGTTATTGTTTGTGTACGGGTGC
ACACGGGCACGAGGGATCGAGATGCGGAAGGAATTACCGCTGCTGCTCCC
CGACGGAGAGGAAGGGATTATGGTGGGATTTGATCTGAGACGACCCCGTG
AATTTCAGTACGGGTTGAATGAGGTGGAGGACGCGTGGGTGTTGAGAGAC
GAAGGATTTCACAGCGTCTATGCCTCTAATTTGCTGTTTCAGACGCCGCT
GGATGATGTGGTGGGGCCCAGCGCGGTGATCAAGGCGTTGCGGGCCAAGG
CATGTCATTTTATGGTGGACCCACTGGACTGGATCGAGAAGGCAGTGACG
GAGGGCACGAAGGAGACGCTGGGGGAGTTGTTGGCCTAG
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protein sequence of NO05G00570.1

>NO05G00570.1-protein ID=NO05G00570.1-protein|Name=NO05G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MLGRRKARVPALALTFLAACTQAFIRIPSPASGRRAISPPPQPPVLSAPL
HTTLFASSDANSPTSTFPAPAAGSGMTEVLARKAKEKEVAAFKAALPRAH
PIFATLEDLPPSPSNQSQILYKALQKRHGNTLTVIAEYWRKAPFSFLGSV
LEPKAYSEIYRKAGASVIAINVDPLTASDVVVDPVQISRAKLAGAAGITL
RYSLNPPEATTALIKTTHALGMEPLVFVKSATEAAAATAAGARLLFVYGC
TRARGIEMRKELPLLLPDGEEGIMVGFDLRRPREFQYGLNEVEDAWVLRD
EGFHSVYASNLLFQTPLDDVVGPSAVIKALRAKACHFMVDPLDWIEKAVT
EGTKETLGELLA*
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mRNA from alignment at chr5:195921..197420-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00570.1 ID=NO05G00570.1|Name=NO05G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1500bp|location=Sequence derived from alignment at chr5:195921..197420- (Nannochloropsis oceanica)
ATGCTGGGGAGACGAAAAGCTAGGGTACCAGCCCTGGCATTGACTTTCCT GGCAGCCTGTACCCAAGCCTTCATCAGAATACCATCACCAGCATCAGGTA AGTCGTATCGACGTGTGCGACGTGCGTTGTGCGCCGGTTGGTCTTTCCGT GCTGTCCTGAGTGTGCGAATGAGAATCCTCCACTTCCGTGCGTTCTGCCT CTCTCTTCACCCTCTTCAATCATCAACAGGCAGAAGAGCCATCTCGCCAC CACCACAACCCCCAGTCCTCAGCGCACCACTCCACACGACCCTCTTCGCC TCTTCCGATGCCAACAGCCCCACTTCCACCTTTCCTGCACCTGCAGCCGG AAGCGGGATGACCGAAGTCCTGGCCCGCAAAGCCAAAGAAAAAGAGGTCG CTGCCTTCAAAGCCGCCCTGCCTCGCGCCCACCCCATCTTTGCCACTCTC GAAGACCTGCCGCCCTCCCCCTCTAATCAATCCCAAATCCTGTACAAGGC CCTTCAAAAACGCCACGGCAATACCTTGACCGTCATTGCCGAGTACTGGC GCAAAGCACCCTTCTCCTTCTTGGGCTCCGTGCTGGAACCCAAAGCATAC AGCGAGATTTACCGGAAAGCGGGTGCCAGCGTCATTGCGATTAATGTTGA CCCTCTTACCGGTGGGTCTCTCCATGAGGATATCGCCCAGATGGTGGCAG AGCAGGAGGCGGCGAGGGGGGGGATGTGAGTGCCCCCATCCCGATCGTAG CCTCGGATGTGGTGGTTGACCCTGTTCAGATTTCGAGGGCCAAGCTTGCT GGAGCTGCAGGCACGTCGTAGTCAGGCTTGTTATGTTTCTCGTCCCTTAA GTGCTCGTCTTCTCTTTTGTCCCCTCTCCCTCCCTTCGGCTGCTTCCAGC GATTTGTGCAGCTGGATATTGATTGAGCATCTCTTAGGCAGTCACTCAAC CCTTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCTCTCCCTCCCTCGATAG GGATCACCCTCCGCTACTCGCTCAATCCTCCCGAGGCCACCACTGCTCTC ATCAAGACGACCCATGCCTTGGGAATGGAACCTCTGGTCTTCGTGAAGAG CGCAACGGAAGCAGCAGCAGCAACAGCAGCAGGAGCCCGGTTATTGTTTG TGTACGGGTGCACACGGGCACGAGGGATCGAGATGCGGAAGGAATTACCG CTGCTGCTCCCCGACGGAGAGGAAGGGATTATGGTGGGATTTGATCTGAG ACGACCCCGTGAATTTCAGTACGGGTTGAATGAGGTGGAGGACGCGTGGG TGTTGAGAGACGAAGGATTTCACAGCGTCTATGCCTCTAATTTGCTGTTT CAGACGCCGCTGGATGATGTGGTGGGGCCCAGCGCGGTGATCAAGGCGTT GCGGGCCAAGGCATGTCATTTTATGGTGGACCCACTGGACTGGATCGAGA AGGCAGTGACGGAGGGCACGAAGGAGACGCTGGGGGAGTTGTTGGCCTAG
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Coding sequence (CDS) from alignment at chr5:195921..197420-

>NO05G00570.1 ID=NO05G00570.1|Name=NO05G00570.1|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at chr5:195921..197420- (Nannochloropsis oceanica)
ATGCTGGGGAGACGAAAAGCTAGGGTACCAGCCCTGGCATTGACTTTCCT
GGCAGCCTGTACCCAAGCCTTCATCAGAATACCATCACCAGCATCAGGCA
GAAGAGCCATCTCGCCACCACCACAACCCCCAGTCCTCAGCGCACCACTC
CACACGACCCTCTTCGCCTCTTCCGATGCCAACAGCCCCACTTCCACCTT
TCCTGCACCTGCAGCCGGAAGCGGGATGACCGAAGTCCTGGCCCGCAAAG
CCAAAGAAAAAGAGGTCGCTGCCTTCAAAGCCGCCCTGCCTCGCGCCCAC
CCCATCTTTGCCACTCTCGAAGACCTGCCGCCCTCCCCCTCTAATCAATC
CCAAATCCTGTACAAGGCCCTTCAAAAACGCCACGGCAATACCTTGACCG
TCATTGCCGAGTACTGGCGCAAAGCACCCTTCTCCTTCTTGGGCTCCGTG
CTGGAACCCAAAGCATACAGCGAGATTTACCGGAAAGCGGGTGCCAGCGT
CATTGCGATTAATGTTGACCCTCTTACCGCCTCGGATGTGGTGGTTGACC
CTGTTCAGATTTCGAGGGCCAAGCTTGCTGGAGCTGCAGGGATCACCCTC
CGCTACTCGCTCAATCCTCCCGAGGCCACCACTGCTCTCATCAAGACGAC
CCATGCCTTGGGAATGGAACCTCTGGTCTTCGTGAAGAGCGCAACGGAAG
CAGCAGCAGCAACAGCAGCAGGAGCCCGGTTATTGTTTGTGTACGGGTGC
ACACGGGCACGAGGGATCGAGATGCGGAAGGAATTACCGCTGCTGCTCCC
CGACGGAGAGGAAGGGATTATGGTGGGATTTGATCTGAGACGACCCCGTG
AATTTCAGTACGGGTTGAATGAGGTGGAGGACGCGTGGGTGTTGAGAGAC
GAAGGATTTCACAGCGTCTATGCCTCTAATTTGCTGTTTCAGACGCCGCT
GGATGATGTGGTGGGGCCCAGCGCGGTGATCAAGGCGTTGCGGGCCAAGG
CATGTCATTTTATGGTGGACCCACTGGACTGGATCGAGAAGGCAGTGACG
GAGGGCACGAAGGAGACGCTGGGGGAGTTGTTGGCCTAG
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Synonyms
Publications