NO05G00210, NO05G00210 (gene) Nannochloropsis oceanica

Overview
NameNO05G00210
Unique NameNO05G00210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4117
Alignment locationchr5:94032..98148 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:94032..98148 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO05G00210 vs. NCBI_GenBank
Match: EWM28370.1 (hypothetical protein Naga_100329g2 [Nannochloropsis gaditana])

HSP 1 Score: 214.2 bits (544), Expect = 1.100e-51
Identity = 224/599 (37.40%), Postives = 266/599 (44.41%), Query Frame = 0 
Query:   10 VSLVIKHVYRSTVVELLVPLHDTTVGSLKRKLQDVLEEKPRPSSQRLIYLGKVYSEEGVPLAVVLAGGNGGEGGPLDLSTPKTLHLIINGSHASXXXXXXXXXXXXXXXXXXXXXLRGPSSLSTLAG-------HHGRDGRNVSGSSSNGA-AVMFPRPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTEEGVQRQGLSRLIAGR---GRRVAGGEETGLPSFPPSAPGDSPGTAGEGNINIPSGECG-PQPPAXXXXXXXXXXXXXXXXXXXXXXXXXVPTSSTAGNYEAS-------EQEAFARLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALILPAW-----PRIVEGGRAVLGLCDWQLAAKMVMLIFLLNPGDPRRLMTLCGVAAVAYMYQTGILALVLGSPFRWPV------------EGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTFWDKAKKMCYTGALPGGEQRWWIEGFVLGASFFLSLFPTWIPYAVVEGGAEGREERVEPAVREGLVQG 573
            V ++++HVYRS  +E  +PL  +TV ++K++++  LEEKP P  QRLIYLGKV  +E  PL  +L GG G +   LDLSTPKT HL++ G  +                         P+S +  AG         GR G  V  +SS+    V+FPRPT                 XXXXXXXXXXXXXXX       V+  G SR   G     R       T +PS       DSP     G+INIPSGE     PPA                 X       VP        E +       +Q       XXXX                                                                                        AL    W     P+++E GRAVL LCDWQLAAKMVML+FLLNPG P+RL TLC VAA+AY+YQTGILAL+LG  FR P             EGA           XXXXXXXXXXXXXXXXX  FW   K+MCYTGALPGGE RWW+E FVL ASFFLSLFPTWIP+ + EG   GRE  +     E  VQG
Sbjct:   11 VHVLVRHVYRSITLEFTLPLEGSTVHAVKKRVEAALEEKPAPHRQRLIYLGKVCVDETAPLVGILTGGTGNDHETLDLSTPKTFHLVVTGITSPVPSVPASVSTSV-----------APTSPALPAGTPGRTLREGGRAGEPVGSTSSSATPTVIFPRPTTSSPIPIHPGVTGGSGRXXXXXXXXXXXXXXXSHGMI--VEENGRSRREGGEREWEREAPSSAATSVPSSVERDVVDSPRAIRGGSINIPSGEGSLLSPPA-----------SLPASVXPSVDGGFVPAPGETREQEKAWLAQHQLQQLFXXXXXXXXXSYQYHCALQQLHHWYAQQMVEGGRVGGAEDGERRFTGAPPPGTWNAFVEDHAERQHAQAAGVAPMPAGREHVGQAEQVAPPRPAGGPQALHAGPWYQEPRPQLLELGRAVLALCDWQLAAKMVMLVFLLNPGKPQRLATLCVVAALAYLYQTGILALLLGPAFRRPAGRGGREXXXXXEEGA-----PADGPEXXXXXXXXXXXXXXXXXKDFWAITKEMCYTGALPGGEHRWWLEAFVLSASFFLSLFPTWIPHRMEEGVEGGREGELGALAGEAAVQG 580
[Close]
BLAST of NO05G00210 vs. NCBI_GenBank
Match: XP_005853701.1 (hypothetical protein NGA_0444000, partial [Nannochloropsis gaditana CCMP526] >EKU22656.1 hypothetical protein NGA_0444000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 177.2 bits (448), Expect = 1.500e-40
Identity = 113/180 (62.78%), Postives = 126/180 (70.00%), Query Frame = 0 
Query:  405 PRIVEGGRAVLGLCDWQLAAKMVMLIFLLNPGDPRRLMTLCGVAAVAYMYQTGILALVLGSPFRWPV------------EGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTFWDKAKKMCYTGALPGGEQRWWIEGFVLGASFFLSLFPTWIPYAVVEGGAEGREERVEPAVREGLVQG 573
            P+++E GRAVL LCDWQLAAKMVML+FLLNPG P+RL TLC VAA+AY+YQTGILAL+LG  FR P             EGA           XXXXXXXXXXXXXXXXX  FW   K+MCYTGALPGGE RWW+E FVL ASFFLSLFPTWIP+ + EG   GRE  +     E  VQG
Sbjct:   73 PQLLELGRAVLALCDWQLAAKMVMLVFLLNPGKPQRLATLCVVAALAYLYQTGILALLLGPAFRRPAGRGGREXXXXXEEGA-----PADGPEXXXXXXXXXXXXXXXXXKDFWAITKEMCYTGALPGGEHRWWLEAFVLSASFFLSLFPTWIPHRMEEGVEGGREGELGALAGEAAVQG 247
[Close]
BLAST of NO05G00210 vs. NCBI_GenBank
Match: XP_005853702.1 (hypothetical protein NGA_0444100, partial [Nannochloropsis gaditana CCMP526] >EKU22657.1 hypothetical protein NGA_0444100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 97.4 bits (241), Expect = 1.500e-16
Identity = 61/160 (38.12%), Postives = 85/160 (53.12%), Query Frame = 0 
Query:   10 VSLVIKHVYRSTVVELLVPLHDTTVGSLKRKLQDVLEEKPRPSSQRLIYLGKVYSEEGVPLAVVLAGGNGGEGGPLDLSTPKTLHLIINGSHASXXXXXXXXXXXXXXXXXXXXXLRGPSSLSTLAG-------HHGRDGRNVSGSSSNGA-AVMFPRPT 162
            V ++++HVYRS  +E  +PL  +TV ++K++++  LEEKP P  QRLIYLGKV  +E  PL  +L GG G +   LDLSTPKT HL++ G  +                         P+S +  AG         GR G  V  +SS+    V+FPRPT
Sbjct:   11 VHVLVRHVYRSITLEFTLPLEGSTVHAVKKRVEAALEEKPAPHRQRLIYLGKVCVDETAPLVGILTGGTGNDHETLDLSTPKTFHLVVTGITSPVPSVPASVSTSV-----------APTSPALPAGTPGRTLREGGRAGEPVGSTSSSATPTVIFPRPT 159
The following BLAST results are available for this feature:
BLAST of NO05G00210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM28370.11.100e-5137.40hypothetical protein Naga_100329g2 [Nannochloropsi... [more]
XP_005853701.11.500e-4062.78hypothetical protein NGA_0444000, partial [Nannoch... [more]
XP_005853702.11.500e-1638.13hypothetical protein NGA_0444100, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR096ncniR096Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003873NSK003873Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00210.1NO05G00210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|408943gene_10751Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100329g2gene2206Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00210.1NO05G00210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00210 ID=NO05G00210|Name=NO05G00210|organism=Nannochloropsis oceanica|type=gene|length=4117bp
TGGATCAAGAAGTGTGCGAGTGATGCTTGTCGTGCTCATTTGTTTGCCTT
GTCTTTGCACTTACTTTACACGCAACACCACACCTCCATCGCACCCATTC
GTCCCGTGTAAGGAAAAGTCGTTAAATGCATATATTCTCTCTGCCACGGA
AGGCGTACCTGCGATTTGCAATGTGTTGTGGTCTAGAGGCAAGAGGCATA
GGAGCGTTAAATTTTGGCAAAGGAGCGTCATCTTGCTTTGCTTGCATCCC
TTTTACCATACCACCATAGCAGGAACCTCCACCACCATAGTACGACACTC
CCTTCCCAGTGCACCTACACAGTTTTTGGAACCAGGCAGTACGCTGCGAC
GCACCCGGGATGACGGGGGCCGGCGGCATCGGGGTAAAAGATGTAGAGGC
AAAGGAGACCCACGATGACTGTGAACTTGCTGCTATTTCTTGCCTGCAGC
GCAGCAATTCCAAGCCCGCCCTTGCCATCACCCTTGTCAATAGAGCCCTG
GCACCCGGTTGCTGTGTCTTCTTGCATTTTCGGCGGAAGGGACGGGAAAG
GCCAAGAGGGGCGCTCTCAAGTTTCCAGAGGAATGTAACAGCACATAGCA
ACGTCCGACCGCAAGCGCACATGCCTGGCCGCAGTAATGAACGCCGATCT
ATCCCATCACACTCCGTTTATGTAGATGACACAACCATTGACGCCCAACT
GTGTTTGACGGTGGTTCGTGTCGCCTGTCACGGTAGAAAATAAGAAAGAG
CACCGGCCTCGCTGGGCCAAGACTCCCCAAATAAGGACGGAGACCAAGCA
GGCGTGATCTGCCCAGCACCCTCACTCACACCTCAGGCCATCTTGCTCGT
GCTCCTCCACAGCATTAATACGTAGACCGCCCATTACTCTTTAACGCTGG
TCTCCGTAGCCTCTGACGGCATACTCACAGGAGACAGCGAGCACTGCATG
GAGATATCCTAACCCGCCCTCTCATCCCTCTCCCTCCCCCCCACTTAAAT
ACACCAGATCACGACGTCAAATGGCGACTACCGCGGACAGCCCAAACGTC
TCCCTGGTGATCAAACACGTCTACCGCTCCACCGTCGTTGAGCTGCTCGT
GCCCTTGCATGACACAACCGTCGGAAGCCTCAAGAGAAAGCTCCAAGATG
TGTTGGAGGAAAAGCCACGACCCAGCAGCCAGCGATTGATCTACCTGGGC
AAAGTCTACAGCGAGGAAGGTGTGCCGTTGGCCGTGGTTTTGGCGGGCGG
GAACGGGGGGGAAGGCGGGgtaggtgacgggagggagggagggagggagg
gagggagggagggagggagggagggaaggaaaggaggtggggtttcaatt
cggatgcatagcttagtgccttggtaattgtgtgcggcgaatcttacccc
atacacccttatgtttcccttctccctctctcccctccacctcagCCACT
GGATCTGAGCACGCCCAAGACGTTGCACCTTATCATCAACGGCAGCCACG
CCTCTTCCTCCCCCTCTTCCTCCCCCCCTTCCTCCTCGCCCTCCCTCCCT
GCCTCGGCCCCTAGTTCCTTGCGTGGGCCATCGTCCCTGTCGACCCTCGC
TGGTCATCATGGGAGGGACGGAAGGAATGTGAGCGGCAGCAGTAGCAATG
GTGCGGCTGTCATGTTTCCCCGACCGACGGCTACCTCGCCTATCCCCGTG
ACAGGAGgtggagggggaggagggggggaggaggagggggaggagagggg
gggggaggaggagcaggcgctttaccgcatggaatgatcgtggaagCTGG
GGAAGAGAGGGGTAGGGAGAACATTCGTGCCAACAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAATGATGTCACGGAGGAGGGGGTGCAACGACAGGGA
TTGTCGCGCCTAATTGCCGGGCGTGGCCGACGAGTGGCAGGAGGGGAAGA
GACAGGCCTTCCCTCCTTCCCTCCCTCGGCCCCGGGGGACTCTCCTGGGA
CTGCAGGAGAGGGGAACATCAACATTCCCTCAGGCGAATGTGGTCCGCAG
CCACCTGCCCCTCCCTCCGTCCCTTCTTCCACCCCTTCCTCCGCCGTTTC
CTCCTCCTTTTCCTCTTCTTCCGCCCACACCCGCGTTCCCACCAGCAGCA
CCGCCGGAAACTATGAAGCCTCTGAGCAGGAAGCTTTTGCACGGCTCCAC
CAGGAGGAGCAACAGCAGGAGCAGGAGCAACTGCAGCTGCAGCAGCAACA
GCAGTACCTGCTGTCTTATCATTACTACCAAGCACTCCAGCACTACCACC
TCTGGTACGCGCACCAGCAGCAGCAGCAGCAGCATCAGCATTATCATTAC
TACATGCAGCTGCACCAGCAGCAGCAGCAGTACCAGCAGCAGCAGTACAA
TCCGCTCTTCCAGCAGCAACAAGAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCCGGAACAAGCAGCCGATGCGAATGCCCTCATCCTCCCTGCTTGGCCA
CGGATTGTGGAGgtacgtcctccttgcgtccattccaccctttctctctc
cctcctttcttctcttcttcctcctcgaatcatctcgatacttctcccaa
agtcattgaaccacaccctccctccctcccttcttccctttctccctccc
ttcctcccttccttcctctagGGTGGGCGCGCTGTCCTCGGCCTCTGTGA
CTGGCAACTAGCGGCCAAGATGGTGATGCTCATCTTCCTCCTTAATCCAG
GCGATCCCCGTCGTCTCATGACTCTGTGCGGAGTGGCAGCTGTCGCGTAC
ATGTACCAGgtagggagggagggagggagggagggagggagggaggaagg
gagggagggaggaagggagggagggagggagggagggagggagggagata
cattcatacccatgacagagtagggggttccttaggtcttgtgagagctt
gattatatattactgagttagtctctagtttaatatgagtcatgacctgt
acgtagaattatttcctcggcatgtccctccttcctgtcttttgcattcg
ccaatcgctttttacgctccgtacttgtcctactcccctccctccctccc
tccctccctccctccctccctttctctcacgtttctccccacagACGGGC
ATCCTCGCCTTGGTCTTGGGCTCTCCGTTCCGCTGGCCAGTCGAAGGAGC
AGCAGCCGCGGCCGACGGGCAACCACCACAGCAGCAGCCGCCACAGGAGG
CAGGAGGGGAGGGAGGAAGGGAGGGAGGGGCAGCTATGACGTTTTGGGAC
AAGGCGAAGAAGATGTGCTACACGGGAGCACTGCCGGGAGGGGAACAGAG
GTGGTGGATAGAGGGTTTCGTGCTCGGGGCCTCCTTCTTCCTCTCCCTCT
TCCCAACCTGGATTCCGTATGCGGTGGTAGAGGGAGGGGCGGAGGGAAGG
GAGGAGAGGGTGGAGCCGGCAGTGAGGGAGGGGCTTGTGCAGGGATAAGA
GGGATAAGATGAAGATAAGCAGGAAGTGTGGTGAAAAACGATTTTCCAAA
GGACGGAGATGAGGGCGACTGGGGAGGGAAAGATGGAAGGAGGGAGGAAG
AGTATGGCACCTGGACTGCTTGGTCACGGTGTGTACATTGTAGTCAAGCG
TCGTCTTGGGAGGATAAAAAAAGTGGCAGCAGCAGCAGCAGCAGCAGCCA
CGTTCACGTACAGCAGGAACATGATTAGAGATGTAGGTAGATAGATAGGA
GAGGAAGGGAGGGAGAGTACCCTATCGATGCACGCTTACATAAAATAAGG
CAAGGACCAAAATCGACAGTGGGGTAAAGATGCAACTACAGACACCCGCA
TAAGATGATGAGAAAGTGAAGCGAAGTGATGTGAGCAGACAGCCATAGAG
AAAAAAAGAAGGGATAGACTTAGAGACGGGGATGGAGGAAGAGGGAGAAG
GAAATTTTACCGAATGAAGAGATACGCTGCTTTAATTCCATTAGATTTCC
CCTCGTGTTTCTTTCTGCTCTCCTTATCCGTGCCTTTTGGCGTACTTTGT
ATGATTGTTGACTTGCTTTGTGTCATTTGAGTGCACCCTCACATTAATTG
CGCGTGCCGAAGCAGGC
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protein sequence of NO05G00210.1

>NO05G00210.1-protein ID=NO05G00210.1-protein|Name=NO05G00210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MATTADSPNVSLVIKHVYRSTVVELLVPLHDTTVGSLKRKLQDVLEEKPR
PSSQRLIYLGKVYSEEGVPLAVVLAGGNGGEGGPLDLSTPKTLHLIINGS
HASSSPSSSPPSSSPSLPASAPSSLRGPSSLSTLAGHHGRDGRNVSGSSS
NGAAVMFPRPTATSPIPVTGAGEERGRENIRANSSSSSSSSSSNDVTEEG
VQRQGLSRLIAGRGRRVAGGEETGLPSFPPSAPGDSPGTAGEGNINIPSG
ECGPQPPAPPSVPSSTPSSAVSSSFSSSSAHTRVPTSSTAGNYEASEQEA
FARLHQEEQQQEQEQLQLQQQQQYLLSYHYYQALQHYHLWYAHQQQQQQH
QHYHYYMQLHQQQQQYQQQQYNPLFQQQQEQQQQQQQQQPEQAADANALI
LPAWPRIVEGGRAVLGLCDWQLAAKMVMLIFLLNPGDPRRLMTLCGVAAV
AYMYQTGILALVLGSPFRWPVEGAAAAADGQPPQQQPPQEAGGEGGREGG
AAMTFWDKAKKMCYTGALPGGEQRWWIEGFVLGASFFLSLFPTWIPYAVV
EGGAEGREERVEPAVREGLVQG*
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Synonyms
Publications