NO04G05180, NO04G05180 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G05180 vs. NCBI_GenBank
Match: OAP07355.1 (hypothetical protein AXX17_AT2G01230 [Arabidopsis thaliana]) HSP 1 Score: 66.2 bits (160), Expect = 3.600e-7 Identity = 42/144 (29.17%), Postives = 57/144 (39.58%), Query Frame = 0 Query: 33 SSSAENA-NFLTDCYYYLND--MCTKGPDCSFRHNEHAKRNHKSCNTWMQGGNCKVECYFRHP---------GAXXXXXXXXXXXXXXXXXXXXXKAICKFFASGKCRNGARCSFRHDHRNAEPTTLHQAASLLCTTAGATEPP 165 SS+ E+A + TDC Y+L C KGP+C +RH+E+A+ N + C W+ G +C FRHP G C FF G C G CSF H A H + T ++ P Sbjct: 22 SSAEEDALKWNTDCVYFLASPLTCKKGPECEYRHSEYARMNPRDCYYWLNGNCLNPKCGFRHPPLEGLLGNQGGAPAVSVQPIHATAQHPSVAKQPVPCVFFQKGMCMKGDMCSFLHTPNPAAYKKQHPVEAKPATDPQCSKKP 165
BLAST of NO04G05180 vs. NCBI_GenBank
Match: CBI27485.3 (unnamed protein product, partial [Vitis vinifera]) HSP 1 Score: 65.1 bits (157), Expect = 8.000e-7 Identity = 47/145 (32.41%), Postives = 65/145 (44.83%), Query Frame = 0 Query: 27 PWRPAPSSSAENA-NFLTDCYYYLND--MCTKGPDCSFRHNEHAKRNHKSCNTWMQGGNCKVECYFRHP---GAXXXXXXXXXXXXXXXXXXXXXKAI-CKFFASGKCRNGARCSFRHDHRNAEPTTLHQAASLLCTTAGATEPP 165 P +P+ + E+A TDC Y+L C KG +C +RH+EHA+ N + C W+ G +C FRHP G +++ C FF G C G RC+F H N + QA + T G TEPP Sbjct: 11 PSQPSAAPPEEDALKRNTDCVYFLASPLTCKKGSECEYRHSEHARMNPRDCWFWLNGNCLNPKCSFRHPPLDGLLGTQATTPSGSSIPTSHSSGKQSVPCIFFQKGLCLKGDRCAFLHG-PNPTGNKIPQAPA---ATPG-TEPP 150
BLAST of NO04G05180 vs. NCBI_GenBank
Match: XP_021981178.1 (zinc finger CCCH domain-containing protein 17-like [Helianthus annuus] >OTG13806.1 putative zinc finger, CCCH-type [Helianthus annuus]) HSP 1 Score: 65.1 bits (157), Expect = 8.000e-7 Identity = 35/101 (34.65%), Postives = 43/101 (42.57%), Query Frame = 0 Query: 43 TDCYYYLND--MCTKGPDCSFRHNEHAKRNHKSCNTWMQGGNCKVECYFRHP---GAXXXXXXXXXXXXXXXXXXXXXKAICKFFASGKCRNGARCSFRHD 139 TDC Y+L C KG +C FRHNE A+ N + C W+ G C EC FRHP G C F++ G C RC F H+ Sbjct: 11 TDCVYFLASPLTCKKGIECEFRHNEIARLNPRDCWYWLGGCCCNPECAFRHPPLEGLKEAYYESINPNNGPTLPVDKTNLPCYFYSKGFCNKADRCPFLHE 111 The following BLAST results are available for this feature:
BLAST of NO04G05180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 13
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G05180 ID=NO04G05180|Name=NO04G05180|organism=Nannochloropsis oceanica|type=gene|length=2474bpback to top protein sequence of NO04G05180.1 >NO04G05180.1-protein ID=NO04G05180.1-protein|Name=NO04G05180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=558bpback to top Synonyms
Publications
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